JoGo: Joint Open Genome and Omics Platform

Search Genic Haplotype Catalog

Haplotypefield

Choose the ACTG layer used to define haplotypes.

Genename

e.g. ALDH2, HBB.

Chr

Chromosome number (1-22, X, Y).

GRCh38

1 = haplotype type matches GRCh38; 0 = does not match.

Chm13v2

1 = haplotype type matches CHM13v2; 0 = does not match.

Gpopname

Filter by superpopulation group.

Popname

Filter by population group.

Total

Minimum number of hits (≥).

Start

Start coordinate (GRCh38).

End

End coordinate (GRCh38).

Sort By

Choose a field to sort by.

Order by

Ascending / Descending.

Show

Results per page.

regionname	grch38/ chm13v2 1/0: The haplotype type is the same as GRCh38 0/1: The haplotype type is the same as CHM13v2 0/0: The haplotype type matches neither GRCh38 nor CHM13v2 1/1: The haplotype type is the same on both GRCh38 and CHM13v2	ahapid	alen	total	AFR	AMR	EAS	EUR	SAS	aseq	genename	chr	start	end
GUCY2D_chr17_7997615_8025342	0/0	a0005	1103	29	24	0	0	0	5	copy fasta	GUCY2D	chr17	7997615	8025342
GUCY2D_chr17_7997615_8025342	0/0	a0006	1103	10	1	4	4	0	1	copy fasta	GUCY2D	chr17	7997615	8025342
GUCY2D_chr17_7997615_8025342	0/0	a0007	1103	5	5	0	0	0	0	copy fasta	GUCY2D	chr17	7997615	8025342
GUCY2D_chr17_7997615_8025342	0/0	a0008	1103	3	0	0	3	0	0	copy fasta	GUCY2D	chr17	7997615	8025342
GUCY2D_chr17_7997615_8025342	0/0	a0009	1103	1	0	1	0	0	0	copy fasta	GUCY2D	chr17	7997615	8025342
GUCY2D_chr17_7997615_8025342	0/0	a0010	1103	1	0	0	1	0	0	copy fasta	GUCY2D	chr17	7997615	8025342
GUCY2D_chr17_7997615_8025342	0/0	a0011	1103	1	0	0	1	0	0	copy fasta	GUCY2D	chr17	7997615	8025342
GUCY2D_chr17_7997615_8025342	0/0	a0012	1103	1	0	0	1	0	0	copy fasta	GUCY2D	chr17	7997615	8025342
GUCY2D_chr17_7997615_8025342	0/0	a0013	1103	1	0	0	1	0	0	copy fasta	GUCY2D	chr17	7997615	8025342
GUCY2D_chr17_7997615_8025342	0/0	a0014	1103	1	0	0	1	0	0	copy fasta	GUCY2D	chr17	7997615	8025342
GUCY2D_chr17_7997615_8025342	0/0	a0015	1103	1	0	0	1	0	0	copy fasta	GUCY2D	chr17	7997615	8025342
GUCY2F_chrX_109367906_109487086	0/0	a0001	1108	148	41	22	70	3	12	copy fasta	GUCY2F	chrX	109367906	109487086
GUCY2F_chrX_109367906_109487086	0/0	a0002	1108	28	1	8	8	2	9	copy fasta	GUCY2F	chrX	109367906	109487086
GUCY2F_chrX_109367906_109487086	1/1	a0003	1108	9	0	4	0	2	1	copy fasta	GUCY2F	chrX	109367906	109487086
GUCY2F_chrX_109367906_109487086	0/0	a0004	1108	7	0	0	7	0	0	copy fasta	GUCY2F	chrX	109367906	109487086
GUCY2F_chrX_109367906_109487086	0/0	a0005	1108	4	3	0	1	0	0	copy fasta	GUCY2F	chrX	109367906	109487086
GUCY2F_chrX_109367906_109487086	0/0	a0006	1108	4	4	0	0	0	0	copy fasta	GUCY2F	chrX	109367906	109487086
GUCY2F_chrX_109367906_109487086	0/0	a0007	1108	3	3	0	0	0	0	copy fasta	GUCY2F	chrX	109367906	109487086
GUCY2F_chrX_109367906_109487086	0/0	a0008	1108	3	3	0	0	0	0	copy fasta	GUCY2F	chrX	109367906	109487086
GUCY2F_chrX_109367906_109487086	0/0	a0009	1108	3	2	1	0	0	0	copy fasta	GUCY2F	chrX	109367906	109487086
GUCY2F_chrX_109367906_109487086	0/0	a0010	1108	3	0	3	0	0	0	copy fasta	GUCY2F	chrX	109367906	109487086
GUCY2F_chrX_109367906_109487086	0/0	a0011	1108	2	2	0	0	0	0	copy fasta	GUCY2F	chrX	109367906	109487086
GUCY2F_chrX_109367906_109487086	0/0	a0012	1108	2	0	0	2	0	0	copy fasta	GUCY2F	chrX	109367906	109487086
GUCY2F_chrX_109367906_109487086	0/0	a0013	1108	1	1	0	0	0	0	copy fasta	GUCY2F	chrX	109367906	109487086
GUF1_chr4_44673420_44705928	1/1	a0001	669	241	60	33	126	4	16	copy fasta	GUF1	chr4	44673420	44705928
GUF1_chr4_44673420_44705928	0/0	a0002	669	137	25	37	55	6	14	copy fasta	GUF1	chr4	44673420	44705928
GUF1_chr4_44673420_44705928	0/0	a0003	669	7	5	2	0	0	0	copy fasta	GUF1	chr4	44673420	44705928
GUF1_chr4_44673420_44705928	0/0	a0004	669	1	1	0	0	0	0	copy fasta	GUF1	chr4	44673420	44705928
GUF1_chr4_44673420_44705928	0/0	a0005	669	1	0	0	1	0	0	copy fasta	GUF1	chr4	44673420	44705928
GUF1_chr4_44673420_44705928	0/0	a0006	669	1	0	1	0	0	0	copy fasta	GUF1	chr4	44673420	44705928
GUF1_chr4_44673420_44705928	0/0	a0007	512	1	0	1	0	0	0	copy fasta	GUF1	chr4	44673420	44705928
GUF1_chr4_44673420_44705928	0/0	a0008	669	1	1	0	0	0	0	copy fasta	GUF1	chr4	44673420	44705928
GUK1_chr1_228135279_228153951	1/1	a0001	218	421	96	80	185	16	42	copy fasta	GUK1	chr1	228135279	228153951
GUK1_chr1_228135279_228153951	0/0	a0002	218	1	0	0	1	0	0	copy fasta	GUK1	chr1	228135279	228153951
GULP1_chr2_188286874_188600926	1/1	a0001	304	161	75	32	26	8	18	copy fasta	GULP1	chr2	188286874	188600926
GULP1_chr2_188286874_188600926	0/0	a0002	304	1	1	0	0	0	0	copy fasta	GULP1	chr2	188286874	188600926
GUSB_chr7_65955684_65987213	0/1	a0001	651	287	35	50	164	10	27	copy fasta	GUSB	chr7	65955684	65987213
GUSB_chr7_65955684_65987213	1/0	a0002	651	129	53	32	24	6	13	copy fasta	GUSB	chr7	65955684	65987213
GUSB_chr7_65955684_65987213	0/0	a0003	651	1	0	0	1	0	0	copy fasta	GUSB	chr7	65955684	65987213
GUSB_chr7_65955684_65987213	0/0	a0004	651	1	0	0	1	0	0	copy fasta	GUSB	chr7	65955684	65987213
GVQW3_chr11_76376323_76413132	1/1	a0001	187	380	88	57	182	14	37	copy fasta	GVQW3	chr11	76376323	76413132
GVQW3_chr11_76376323_76413132	0/0	a0002	187	1	0	1	0	0	0	copy fasta	GVQW3	chr11	76376323	76413132
GVQW3_chr11_76376323_76413132	0/0	a0003	187	1	0	0	0	0	1	copy fasta	GVQW3	chr11	76376323	76413132
GXYLT1_chr12_42076845_42149874	1/1	a0001	440	395	91	72	184	14	32	copy fasta	GXYLT1	chr12	42076845	42149874
GXYLT1_chr12_42076845_42149874	0/0	a0002	427	3	1	0	2	0	0	copy fasta	GXYLT1	chr12	42076845	42149874
GXYLT2_chr3_72883046_72981915	1/1	a0001	443	282	85	67	88	6	34	copy fasta	GXYLT2	chr3	72883046	72981915
GXYLT2_chr3_72883046_72981915	0/0	a0002	443	11	11	0	0	0	0	copy fasta	GXYLT2	chr3	72883046	72981915
GXYLT2_chr3_72883046_72981915	0/0	a0003	443	1	0	1	0	0	0	copy fasta	GXYLT2	chr3	72883046	72981915
GXYLT2_chr3_72883046_72981915	0/0	a0004	443	1	1	0	0	0	0	copy fasta	GXYLT2	chr3	72883046	72981915
GXYLT2_chr3_72883046_72981915	0/0	a0005	443	1	1	0	0	0	0	copy fasta	GXYLT2	chr3	72883046	72981915