JoGo: Joint Open Genome and Omics Platform

Search Genic Haplotype Catalog

Haplotypefield

Choose the ACTG layer used to define haplotypes.

Genename

e.g. ALDH2, HBB.

Chr

Chromosome number (1-22, X, Y).

GRCh38

1 = haplotype type matches GRCh38; 0 = does not match.

Chm13v2

1 = haplotype type matches CHM13v2; 0 = does not match.

Gpopname

Filter by superpopulation group.

Popname

Filter by population group.

Total

Minimum number of hits (≥).

Start

Start coordinate (GRCh38).

End

End coordinate (GRCh38).

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regionname	grch38/ chm13v2 1/0: The haplotype type is the same as GRCh38 0/1: The haplotype type is the same as CHM13v2 0/0: The haplotype type matches neither GRCh38 nor CHM13v2 1/1: The haplotype type is the same on both GRCh38 and CHM13v2	ahapid	alen	total	AFR	AMR	EAS	EUR	SAS	aseq	genename	chr	start	end
GZMM_chr19_539053_554922	0/0	a0002	257	14	3	0	10	0	1	copy fasta	GZMM	chr19	539053	554922
GZMM_chr19_539053_554922	0/0	a0003	257	10	9	1	0	0	0	copy fasta	GZMM	chr19	539053	554922
GZMM_chr19_539053_554922	0/0	a0004	257	5	0	0	5	0	0	copy fasta	GZMM	chr19	539053	554922
GZMM_chr19_539053_554922	1/0	a0005	257	2	0	0	0	1	0	copy fasta	GZMM	chr19	539053	554922
GZMM_chr19_539053_554922	0/0	a0006	257	2	0	0	0	2	0	copy fasta	GZMM	chr19	539053	554922
GZMM_chr19_539053_554922	0/0	a0007	257	1	1	0	0	0	0	copy fasta	GZMM	chr19	539053	554922
GZMM_chr19_539053_554922	0/0	a0008	199	1	0	1	0	0	0	copy fasta	GZMM	chr19	539053	554922
GZMM_chr19_539053_554922	0/0	a0009	257	1	0	0	1	0	0	copy fasta	GZMM	chr19	539053	554922
GZMM_chr19_539053_554922	0/0	a0010	257	1	0	0	1	0	0	copy fasta	GZMM	chr19	539053	554922
GZMM_chr19_539053_554922	0/0	a0011	257	1	0	0	1	0	0	copy fasta	GZMM	chr19	539053	554922
GZMM_chr19_539053_554922	0/0	a0012	257	1	0	0	1	0	0	copy fasta	GZMM	chr19	539053	554922
GZMM_chr19_539053_554922	0/0	a0013	257	1	1	0	0	0	0	copy fasta	GZMM	chr19	539053	554922
H1-0_chr22_37800229_37812432	1/1	a0001	194	359	88	70	149	14	36	copy fasta	H1-0	chr22	37800229	37812432
H1-0_chr22_37800229_37812432	0/0	a0002	194	1	0	0	1	0	0	copy fasta	H1-0	chr22	37800229	37812432
H1-10_chr3_129309771_129321286	1/1	a0001	213	397	91	80	176	12	36	copy fasta	H1-10	chr3	129309771	129321286
H1-10_chr3_129309771_129321286	0/0	a0002	213	1	0	0	0	0	1	copy fasta	H1-10	chr3	129309771	129321286
H1-10_chr3_129309771_129321286	0/0	a0003	213	1	0	0	0	0	1	copy fasta	H1-10	chr3	129309771	129321286
H1-10_chr3_129309771_129321286	0/0	a0004	213	1	1	0	0	0	0	copy fasta	H1-10	chr3	129309771	129321286
H1-1_chr6_26012032_26022787	1/1	a0001	215	364	82	62	157	16	45	copy fasta	H1-1	chr6	26012032	26022787
H1-1_chr6_26012032_26022787	0/0	a0002	215	22	12	5	2	1	2	copy fasta	H1-1	chr6	26012032	26022787
H1-1_chr6_26012032_26022787	0/0	a0003	215	3	0	2	0	1	0	copy fasta	H1-1	chr6	26012032	26022787
H1-1_chr6_26012032_26022787	0/0	a0004	215	2	2	0	0	0	0	copy fasta	H1-1	chr6	26012032	26022787
H1-1_chr6_26012032_26022787	0/0	a0005	215	1	1	0	0	0	0	copy fasta	H1-1	chr6	26012032	26022787
H1-1_chr6_26012032_26022787	0/0	a0006	215	1	1	0	0	0	0	copy fasta	H1-1	chr6	26012032	26022787
H1-1_chr6_26012032_26022787	0/0	a0007	215	1	0	0	0	0	1	copy fasta	H1-1	chr6	26012032	26022787
H1-1_chr6_26012032_26022787	0/0	a0008	215	1	0	0	1	0	0	copy fasta	H1-1	chr6	26012032	26022787
H1-1_chr6_26012032_26022787	0/0	a0009	215	1	0	1	0	0	0	copy fasta	H1-1	chr6	26012032	26022787
H1-2_chr6_26050740_26061470	1/1	a0001	213	259	82	49	74	16	36	copy fasta	H1-2	chr6	26050740	26061470
H1-2_chr6_26050740_26061470	0/0	a0002	213	116	1	20	90	0	5	copy fasta	H1-2	chr6	26050740	26061470
H1-2_chr6_26050740_26061470	0/0	a0003	213	14	2	0	12	0	0	copy fasta	H1-2	chr6	26050740	26061470
H1-2_chr6_26050740_26061470	0/0	a0004	213	5	0	0	5	0	0	copy fasta	H1-2	chr6	26050740	26061470
H1-2_chr6_26050740_26061470	0/0	a0005	213	5	0	0	5	0	0	copy fasta	H1-2	chr6	26050740	26061470
H1-2_chr6_26050740_26061470	0/0	a0006	213	4	0	0	1	0	3	copy fasta	H1-2	chr6	26050740	26061470
H1-2_chr6_26050740_26061470	0/0	a0007	213	3	0	0	3	0	0	copy fasta	H1-2	chr6	26050740	26061470
H1-2_chr6_26050740_26061470	0/0	a0008	213	2	2	0	0	0	0	copy fasta	H1-2	chr6	26050740	26061470
H1-2_chr6_26050740_26061470	0/0	a0009	213	2	0	0	2	0	0	copy fasta	H1-2	chr6	26050740	26061470
H1-2_chr6_26050740_26061470	0/0	a0010	213	2	0	0	2	0	0	copy fasta	H1-2	chr6	26050740	26061470
H1-2_chr6_26050740_26061470	0/0	a0011	213	1	0	0	1	0	0	copy fasta	H1-2	chr6	26050740	26061470
H1-2_chr6_26050740_26061470	0/0	a0012	213	1	1	0	0	0	0	copy fasta	H1-2	chr6	26050740	26061470
H1-2_chr6_26050740_26061470	0/0	a0013	213	1	1	0	0	0	0	copy fasta	H1-2	chr6	26050740	26061470
H1-2_chr6_26050740_26061470	0/0	a0014	213	1	1	0	0	0	0	copy fasta	H1-2	chr6	26050740	26061470
H1-2_chr6_26050740_26061470	0/0	a0015	213	1	0	1	0	0	0	copy fasta	H1-2	chr6	26050740	26061470
H1-2_chr6_26050740_26061470	0/0	a0016	213	1	0	0	1	0	0	copy fasta	H1-2	chr6	26050740	26061470
H1-2_chr6_26050740_26061470	0/0	a0017	213	1	0	0	1	0	0	copy fasta	H1-2	chr6	26050740	26061470
H1-2_chr6_26050740_26061470	0/0	a0018	213	1	0	0	1	0	0	copy fasta	H1-2	chr6	26050740	26061470
H1-2_chr6_26050740_26061470	0/0	a0019	213	1	0	0	0	0	1	copy fasta	H1-2	chr6	26050740	26061470
H1-2_chr6_26050740_26061470	0/0	a0020	213	1	0	0	0	0	1	copy fasta	H1-2	chr6	26050740	26061470
H1-3_chr6_26229212_26239987	1/1	a0001	221	332	93	69	113	14	41	copy fasta	H1-3	chr6	26229212	26239987
H1-3_chr6_26229212_26239987	0/0	a0002	221	2	0	2	0	0	0	copy fasta	H1-3	chr6	26229212	26239987
H1-3_chr6_26229212_26239987	0/0	a0003	221	2	0	0	2	0	0	copy fasta	H1-3	chr6	26229212	26239987