JoGo: Joint Open Genome and Omics Platform

Search Genic Haplotype Catalog

Haplotypefield

Choose the ACTG layer used to define haplotypes.

Genename

e.g. ALDH2, HBB.

Chr

Chromosome number (1-22, X, Y).

GRCh38

1 = haplotype type matches GRCh38; 0 = does not match.

Chm13v2

1 = haplotype type matches CHM13v2; 0 = does not match.

Gpopname

Filter by superpopulation group.

Popname

Filter by population group.

Total

Minimum number of hits (≥).

Start

Start coordinate (GRCh38).

End

End coordinate (GRCh38).

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regionname	grch38/ chm13v2 1/0: The haplotype type is the same as GRCh38 0/1: The haplotype type is the same as CHM13v2 0/0: The haplotype type matches neither GRCh38 nor CHM13v2 1/1: The haplotype type is the same on both GRCh38 and CHM13v2	ahapid	alen	total	AFR	AMR	EAS	EUR	SAS	aseq	genename	chr	start	end
HAP1_chr17_41717640_41739643	0/0	a0040	619	1	0	0	1	0	0	copy fasta	HAP1	chr17	41717640	41739643
HAP1_chr17_41717640_41739643	0/0	a0041	619	1	0	1	0	0	0	copy fasta	HAP1	chr17	41717640	41739643
HAPLN1_chr5_83632805_83725855	1/1	a0001	354	343	61	50	165	15	50	copy fasta	HAPLN1	chr5	83632805	83725855
HAPLN1_chr5_83632805_83725855	0/0	a0002	354	25	22	3	0	0	0	copy fasta	HAPLN1	chr5	83632805	83725855
HAPLN1_chr5_83632805_83725855	0/0	a0003	354	1	0	0	0	1	0	copy fasta	HAPLN1	chr5	83632805	83725855
HAPLN1_chr5_83632805_83725855	0/0	a0004	354	1	0	0	1	0	0	copy fasta	HAPLN1	chr5	83632805	83725855
HAPLN1_chr5_83632805_83725855	0/0	a0005	354	1	1	0	0	0	0	copy fasta	HAPLN1	chr5	83632805	83725855
HAPLN1_chr5_83632805_83725855	0/0	a0006	354	1	0	1	0	0	0	copy fasta	HAPLN1	chr5	83632805	83725855
HAPLN2_chr1_156614415_156630725	1/1	a0001	340	413	95	78	182	16	40	copy fasta	HAPLN2	chr1	156614415	156630725
HAPLN2_chr1_156614415_156630725	0/0	a0002	340	5	5	0	0	0	0	copy fasta	HAPLN2	chr1	156614415	156630725
HAPLN3_chr15_88872294_88900544	1/1	a0001	360	427	90	78	194	18	45	copy fasta	HAPLN3	chr15	88872294	88900544
HAPLN3_chr15_88872294_88900544	0/0	a0002	360	5	5	0	0	0	0	copy fasta	HAPLN3	chr15	88872294	88900544
HAPLN3_chr15_88872294_88900544	0/0	a0003	360	1	0	0	1	0	0	copy fasta	HAPLN3	chr15	88872294	88900544
HAPLN3_chr15_88872294_88900544	0/0	a0004	360	1	0	0	0	0	1	copy fasta	HAPLN3	chr15	88872294	88900544
HAPLN3_chr15_88872294_88900544	0/0	a0005	360	1	0	0	1	0	0	copy fasta	HAPLN3	chr15	88872294	88900544
HAPLN3_chr15_88872294_88900544	0/0	a0006	360	1	1	0	0	0	0	copy fasta	HAPLN3	chr15	88872294	88900544
HAPLN4_chr19_19249756_19267804	1/1	a0001	402	396	93	76	164	18	43	copy fasta	HAPLN4	chr19	19249756	19267804
HAPLN4_chr19_19249756_19267804	0/0	a0002	402	1	0	0	1	0	0	copy fasta	HAPLN4	chr19	19249756	19267804
HAPLN4_chr19_19249756_19267804	0/0	a0003	402	1	0	0	0	0	1	copy fasta	HAPLN4	chr19	19249756	19267804
HAPLN4_chr19_19249756_19267804	0/0	a0004	402	1	0	0	1	0	0	copy fasta	HAPLN4	chr19	19249756	19267804
HAPLN4_chr19_19249756_19267804	0/0	a0005	402	1	1	0	0	0	0	copy fasta	HAPLN4	chr19	19249756	19267804
HAPSTR1_chr16_9086644_9126635	1/1	a0001	275	385	85	68	176	16	38	copy fasta	HAPSTR1	chr16	9086644	9126635
HAPSTR1_chr16_9086644_9126635	0/0	a0002	275	13	13	0	0	0	0	copy fasta	HAPSTR1	chr16	9086644	9126635
HAPSTR2_chrX_140086678_140097911	1/1	a0001	273	309	73	57	137	12	28	copy fasta	HAPSTR2	chrX	140086678	140097911
HAPSTR2_chrX_140086678_140097911	0/0	a0002	273	2	0	0	2	0	0	copy fasta	HAPSTR2	chrX	140086678	140097911
HAPSTR2_chrX_140086678_140097911	0/0	a0003	273	1	0	0	1	0	0	copy fasta	HAPSTR2	chrX	140086678	140097911
HARBI1_chr11_46597861_46622227	1/1	a0001	349	257	93	48	72	8	34	copy fasta	HARBI1	chr11	46597861	46622227
HARBI1_chr11_46597861_46622227	0/0	a0002	349	1	1	0	0	0	0	copy fasta	HARBI1	chr11	46597861	46622227
HARS1_chr5_140668905_140696370	1/1	a0001	509	367	87	54	175	12	37	copy fasta	HARS1	chr5	140668905	140696370
HARS1_chr5_140668905_140696370	0/0	a0002	509	5	0	2	0	3	0	copy fasta	HARS1	chr5	140668905	140696370
HARS1_chr5_140668905_140696370	0/0	a0003	509	4	0	0	3	0	1	copy fasta	HARS1	chr5	140668905	140696370
HARS1_chr5_140668905_140696370	0/0	a0004	509	3	3	0	0	0	0	copy fasta	HARS1	chr5	140668905	140696370
HARS1_chr5_140668905_140696370	0/0	a0005	509	2	0	0	2	0	0	copy fasta	HARS1	chr5	140668905	140696370
HARS1_chr5_140668905_140696370	0/0	a0006	509	2	2	0	0	0	0	copy fasta	HARS1	chr5	140668905	140696370
HARS1_chr5_140668905_140696370	0/0	a0007	509	1	0	0	0	1	0	copy fasta	HARS1	chr5	140668905	140696370
HARS2_chr5_140686455_140704305	1/1	a0001	506	379	98	53	178	15	33	copy fasta	HARS2	chr5	140686455	140704305
HARS2_chr5_140686455_140704305	0/0	a0002	506	1	0	0	1	0	0	copy fasta	HARS2	chr5	140686455	140704305
HARS2_chr5_140686455_140704305	0/0	a0003	506	1	0	0	1	0	0	copy fasta	HARS2	chr5	140686455	140704305
HARS2_chr5_140686455_140704305	0/0	a0004	506	1	0	1	0	0	0	copy fasta	HARS2	chr5	140686455	140704305
HARS2_chr5_140686455_140704305	0/0	a0005	506	1	0	0	0	0	1	copy fasta	HARS2	chr5	140686455	140704305
HARS2_chr5_140686455_140704305	0/0	a0006	506	1	0	0	0	1	0	copy fasta	HARS2	chr5	140686455	140704305
HAS1_chr19_51708112_51728991	0/0	a0001	577	385	71	61	205	10	38	copy fasta	HAS1	chr19	51708112	51728991
HAS1_chr19_51708112_51728991	1/1	a0002	577	57	20	19	1	5	10	copy fasta	HAS1	chr19	51708112	51728991
HAS1_chr19_51708112_51728991	0/0	a0003	577	5	5	0	0	0	0	copy fasta	HAS1	chr19	51708112	51728991
HAS1_chr19_51708112_51728991	0/0	a0004	577	3	0	0	3	0	0	copy fasta	HAS1	chr19	51708112	51728991
HAS1_chr19_51708112_51728991	0/0	a0005	577	2	0	0	2	0	0	copy fasta	HAS1	chr19	51708112	51728991
HAS1_chr19_51708112_51728991	0/0	a0006	577	2	0	0	1	0	1	copy fasta	HAS1	chr19	51708112	51728991
HAS1_chr19_51708112_51728991	0/0	a0007	577	1	0	1	0	0	0	copy fasta	HAS1	chr19	51708112	51728991
HAS1_chr19_51708112_51728991	0/0	a0008	577	1	0	0	1	0	0	copy fasta	HAS1	chr19	51708112	51728991
HAS1_chr19_51708112_51728991	0/0	a0009	577	1	1	0	0	0	0	copy fasta	HAS1	chr19	51708112	51728991