JoGo: Joint Open Genome and Omics Platform

Search Genic Haplotype Catalog

Haplotypefield

Choose the ACTG layer used to define haplotypes.

Genename

e.g. ALDH2, HBB.

Chr

Chromosome number (1-22, X, Y).

GRCh38

1 = haplotype type matches GRCh38; 0 = does not match.

Chm13v2

1 = haplotype type matches CHM13v2; 0 = does not match.

Gpopname

Filter by superpopulation group.

Popname

Filter by population group.

Total

Minimum number of hits (≥).

Start

Start coordinate (GRCh38).

End

End coordinate (GRCh38).

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regionname	grch38/ chm13v2 1/0: The haplotype type is the same as GRCh38 0/1: The haplotype type is the same as CHM13v2 0/0: The haplotype type matches neither GRCh38 nor CHM13v2 1/1: The haplotype type is the same on both GRCh38 and CHM13v2	ahapid	alen	total	AFR	AMR	EAS	EUR	SAS	aseq	genename	chr	start	end
HAUS7_chrX_153442668_153475576	0/0	a0004	358	2	0	1	0	0	1	copy fasta	HAUS7	chrX	153442668	153475576
HAUS7_chrX_153442668_153475576	0/0	a0005	68	1	0	0	1	0	0	copy fasta	HAUS7	chrX	153442668	153475576
HAUS7_chrX_153442668_153475576	0/0	a0006	358	1	0	0	1	0	0	copy fasta	HAUS7	chrX	153442668	153475576
HAUS7_chrX_153442668_153475576	0/0	a0007	358	1	0	1	0	0	0	copy fasta	HAUS7	chrX	153442668	153475576
HAUS7_chrX_153442668_153475576	0/0	a0008	353	1	0	0	0	1	0	copy fasta	HAUS7	chrX	153442668	153475576
HAUS7_chrX_153442668_153475576	0/0	a0009	358	1	0	0	0	0	1	copy fasta	HAUS7	chrX	153442668	153475576
HAUS7_chrX_153442668_153475576	0/0	a0010	112	1	0	0	1	0	0	copy fasta	HAUS7	chrX	153442668	153475576
HAUS7_chrX_153442668_153475576	0/0	a0011	112	1	0	0	1	0	0	copy fasta	HAUS7	chrX	153442668	153475576
HAUS8_chr19_17044729_17080452	1/1	a0001	410	207	44	34	105	6	16	copy fasta	HAUS8	chr19	17044729	17080452
HAUS8_chr19_17044729_17080452	0/0	a0002	410	153	37	22	59	8	27	copy fasta	HAUS8	chr19	17044729	17080452
HAUS8_chr19_17044729_17080452	0/0	a0003	410	16	1	9	5	0	1	copy fasta	HAUS8	chr19	17044729	17080452
HAUS8_chr19_17044729_17080452	0/0	a0004	410	16	0	9	7	0	0	copy fasta	HAUS8	chr19	17044729	17080452
HAUS8_chr19_17044729_17080452	0/0	a0005	410	7	7	0	0	0	0	copy fasta	HAUS8	chr19	17044729	17080452
HAUS8_chr19_17044729_17080452	0/0	a0006	410	1	1	0	0	0	0	copy fasta	HAUS8	chr19	17044729	17080452
HAVCR1_chr5_157024413_157064116	0/0	a0001	359	126	7	20	76	5	18	copy fasta	HAVCR1	chr5	157024413	157064116
HAVCR1_chr5_157024413_157064116	0/0	a0002	364	91	35	12	32	4	8	copy fasta	HAVCR1	chr5	157024413	157064116
HAVCR1_chr5_157024413_157064116	0/1	a0003	359	62	5	21	21	5	9	copy fasta	HAVCR1	chr5	157024413	157064116
HAVCR1_chr5_157024413_157064116	1/0	a0004	364	34	15	9	4	4	1	copy fasta	HAVCR1	chr5	157024413	157064116
HAVCR1_chr5_157024413_157064116	0/0	a0005	365	13	7	1	3	0	2	copy fasta	HAVCR1	chr5	157024413	157064116
HAVCR1_chr5_157024413_157064116	0/0	a0006	365	8	5	3	0	0	0	copy fasta	HAVCR1	chr5	157024413	157064116
HAVCR1_chr5_157024413_157064116	0/0	a0007	359	7	7	0	0	0	0	copy fasta	HAVCR1	chr5	157024413	157064116
HAVCR1_chr5_157024413_157064116	0/0	a0008	365	3	3	0	0	0	0	copy fasta	HAVCR1	chr5	157024413	157064116
HAVCR1_chr5_157024413_157064116	0/0	a0009	359	3	3	0	0	0	0	copy fasta	HAVCR1	chr5	157024413	157064116
HAVCR1_chr5_157024413_157064116	0/0	a0010	359	1	1	0	0	0	0	copy fasta	HAVCR1	chr5	157024413	157064116
HAVCR1_chr5_157024413_157064116	0/0	a0011	365	1	1	0	0	0	0	copy fasta	HAVCR1	chr5	157024413	157064116
HAVCR1_chr5_157024413_157064116	0/0	a0012	364	1	1	0	0	0	0	copy fasta	HAVCR1	chr5	157024413	157064116
HAVCR1_chr5_157024413_157064116	0/0	a0013	359	1	0	0	1	0	0	copy fasta	HAVCR1	chr5	157024413	157064116
HAVCR1_chr5_157024413_157064116	0/0	a0014	359	1	0	0	1	0	0	copy fasta	HAVCR1	chr5	157024413	157064116
HAVCR2_chr5_157080832_157114044	0/1	a0001	301	329	77	53	156	8	34	copy fasta	HAVCR2	chr5	157080832	157114044
HAVCR2_chr5_157080832_157114044	1/0	a0002	301	44	20	11	6	4	2	copy fasta	HAVCR2	chr5	157080832	157114044
HAVCR2_chr5_157080832_157114044	0/0	a0003	301	5	0	1	4	0	0	copy fasta	HAVCR2	chr5	157080832	157114044
HAVCR2_chr5_157080832_157114044	0/0	a0004	301	1	0	1	0	0	0	copy fasta	HAVCR2	chr5	157080832	157114044
HAVCR2_chr5_157080832_157114044	0/0	a0005	301	1	1	0	0	0	0	copy fasta	HAVCR2	chr5	157080832	157114044
HAX1_chr1_154267629_154280875	1/1	a0001	279	386	93	72	166	10	43	copy fasta	HAX1	chr1	154267629	154280875
HAX1_chr1_154267629_154280875	0/0	a0002	279	3	0	0	3	0	0	copy fasta	HAX1	chr1	154267629	154280875
HAX1_chr1_154267629_154280875	0/0	a0003	279	1	1	0	0	0	0	copy fasta	HAX1	chr1	154267629	154280875
HAX1_chr1_154267629_154280875	0/0	a0004	279	1	0	0	0	0	1	copy fasta	HAX1	chr1	154267629	154280875
HAX1_chr1_154267629_154280875	0/0	a0005	279	1	0	0	1	0	0	copy fasta	HAX1	chr1	154267629	154280875
HBA1_chr16_171680_182522	0/0	a0000	0	1	0	0	1	0	0	copy fasta	HBA1	chr16	171680	182522
HBA1_chr16_171680_182522	1/1	a0001	142	397	94	66	185	14	36	copy fasta	HBA1	chr16	171680	182522
HBA2_chr16_167876_178710	0/0	a0000	0	15	10	2	1	0	2	copy fasta	HBA2	chr16	167876	178710
HBA2_chr16_167876_178710	1/1	a0001	142	371	78	64	179	12	36	copy fasta	HBA2	chr16	167876	178710
HBB_chr11_5220464_5232071	1/1	a0001	147	470	82	88	232	18	48	copy fasta	HBB	chr11	5220464	5232071
HBB_chr11_5220464_5232071	0/0	a0002	147	15	15	0	0	0	0	copy fasta	HBB	chr11	5220464	5232071
HBB_chr11_5220464_5232071	0/0	a0003	147	3	3	0	0	0	0	copy fasta	HBB	chr11	5220464	5232071
HBD_chr11_5227838_5239483	1/1	a0001	147	459	99	86	208	14	50	copy fasta	HBD	chr11	5227838	5239483
HBD_chr11_5227838_5239483	0/0	a0002	147	1	1	0	0	0	0	copy fasta	HBD	chr11	5227838	5239483
HBE1_chr11_5263345_5274945	1/1	a0001	147	414	97	80	177	12	46	copy fasta	HBE1	chr11	5263345	5274945
HBE1_chr11_5263345_5274945	0/0	a0002	147	1	0	0	1	0	0	copy fasta	HBE1	chr11	5263345	5274945
HBE1_chr11_5263345_5274945	0/0	a0003	147	1	1	0	0	0	0	copy fasta	HBE1	chr11	5263345	5274945