JoGo: Joint Open Genome and Omics Platform

Search Genic Haplotype Catalog

Haplotypefield

Choose the ACTG layer used to define haplotypes.

Genename

e.g. ALDH2, HBB.

Chr

Chromosome number (1-22, X, Y).

GRCh38

1 = haplotype type matches GRCh38; 0 = does not match.

Chm13v2

1 = haplotype type matches CHM13v2; 0 = does not match.

Gpopname

Filter by superpopulation group.

Popname

Filter by population group.

Total

Minimum number of hits (≥).

Start

Start coordinate (GRCh38).

End

End coordinate (GRCh38).

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regionname	grch38/ chm13v2 1/0: The haplotype type is the same as GRCh38 0/1: The haplotype type is the same as CHM13v2 0/0: The haplotype type matches neither GRCh38 nor CHM13v2 1/1: The haplotype type is the same on both GRCh38 and CHM13v2	ahapid	alen	total	AFR	AMR	EAS	EUR	SAS	aseq	genename	chr	start	end
HERPUD1_chr16_56927142_56949864	0/0	a0003	391	2	2	0	0	0	0	copy fasta	HERPUD1	chr16	56927142	56949864
HERPUD1_chr16_56927142_56949864	0/0	a0004	391	1	0	0	1	0	0	copy fasta	HERPUD1	chr16	56927142	56949864
HERPUD1_chr16_56927142_56949864	0/0	a0005	391	1	0	1	0	0	0	copy fasta	HERPUD1	chr16	56927142	56949864
HERPUD2_chr7_35627659_35700135	1/1	a0001	406	280	76	41	130	9	22	copy fasta	HERPUD2	chr7	35627659	35700135
HERPUD2_chr7_35627659_35700135	0/0	a0002	406	104	10	22	50	5	17	copy fasta	HERPUD2	chr7	35627659	35700135
HERPUD2_chr7_35627659_35700135	0/0	a0003	406	4	0	0	4	0	0	copy fasta	HERPUD2	chr7	35627659	35700135
HERPUD2_chr7_35627659_35700135	0/0	a0004	406	2	0	1	0	0	1	copy fasta	HERPUD2	chr7	35627659	35700135
HERPUD2_chr7_35627659_35700135	0/0	a0005	406	1	0	0	1	0	0	copy fasta	HERPUD2	chr7	35627659	35700135
HERPUD2_chr7_35627659_35700135	0/0	a0006	406	1	0	0	1	0	0	copy fasta	HERPUD2	chr7	35627659	35700135
HES1_chr3_194131148_194143732	1/1	a0001	280	433	98	84	190	12	47	copy fasta	HES1	chr3	194131148	194143732
HES1_chr3_194131148_194143732	0/0	a0002	287	1	0	0	0	0	1	copy fasta	HES1	chr3	194131148	194143732
HES2_chr1_6410232_6424919	1/1	a0001	173	302	78	50	129	10	33	copy fasta	HES2	chr1	6410232	6424919
HES2_chr1_6410232_6424919	0/0	a0002	173	59	17	4	37	0	1	copy fasta	HES2	chr1	6410232	6424919
HES2_chr1_6410232_6424919	0/0	a0003	173	1	1	0	0	0	0	copy fasta	HES2	chr1	6410232	6424919
HES3_chr1_6239179_6250578	1/1	a0001	186	185	61	18	81	9	14	copy fasta	HES3	chr1	6239179	6250578
HES3_chr1_6239179_6250578	0/0	a0002	186	176	26	42	74	8	26	copy fasta	HES3	chr1	6239179	6250578
HES3_chr1_6239179_6250578	0/0	a0003	186	14	4	3	2	0	5	copy fasta	HES3	chr1	6239179	6250578
HES3_chr1_6239179_6250578	0/0	a0004	186	5	1	3	0	1	0	copy fasta	HES3	chr1	6239179	6250578
HES3_chr1_6239179_6250578	0/0	a0005	186	3	2	0	0	0	1	copy fasta	HES3	chr1	6239179	6250578
HES3_chr1_6239179_6250578	0/0	a0006	186	1	0	0	1	0	0	copy fasta	HES3	chr1	6239179	6250578
HES4_chr1_993964_1005097	0/0	a0000	0	1	0	0	1	0	0	copy fasta	HES4	chr1	993964	1005097
HES4_chr1_993964_1005097	1/1	a0001	221	388	93	84	151	16	42	copy fasta	HES4	chr1	993964	1005097
HES4_chr1_993964_1005097	0/0	a0002	221	3	0	0	0	0	3	copy fasta	HES4	chr1	993964	1005097
HES4_chr1_993964_1005097	0/0	a0003	221	1	1	0	0	0	0	copy fasta	HES4	chr1	993964	1005097
HES4_chr1_993964_1005097	0/0	a0004	221	1	0	0	1	0	0	copy fasta	HES4	chr1	993964	1005097
HES4_chr1_993964_1005097	0/0	a0005	221	1	0	0	1	0	0	copy fasta	HES4	chr1	993964	1005097
HES4_chr1_993964_1005097	0/0	a0006	221	1	0	0	0	0	1	copy fasta	HES4	chr1	993964	1005097
HES5_chr1_2523745_2535263	0/1	a0001	166	413	93	71	193	12	43	copy fasta	HES5	chr1	2523745	2535263
HES5_chr1_2523745_2535263	0/0	a0002	163	5	0	0	5	0	0	copy fasta	HES5	chr1	2523745	2535263
HES5_chr1_2523745_2535263	0/0	a0003	167	3	2	1	0	0	0	copy fasta	HES5	chr1	2523745	2535263
HES5_chr1_2523745_2535263	0/0	a0004	166	3	3	0	0	0	0	copy fasta	HES5	chr1	2523745	2535263
HES5_chr1_2523745_2535263	0/0	a0005	166	2	0	0	0	0	2	copy fasta	HES5	chr1	2523745	2535263
HES5_chr1_2523745_2535263	0/0	a0006	166	1	0	0	0	0	1	copy fasta	HES5	chr1	2523745	2535263
HES6_chr2_238233267_238245038	1/1	a0001	224	409	94	76	173	16	48	copy fasta	HES6	chr2	238233267	238245038
HES6_chr2_238233267_238245038	0/0	a0002	224	30	0	4	26	0	0	copy fasta	HES6	chr2	238233267	238245038
HES6_chr2_238233267_238245038	0/0	a0003	224	1	0	0	1	0	0	copy fasta	HES6	chr2	238233267	238245038
HES7_chr17_8115592_8129106	1/1	a0001	230	444	93	78	208	15	48	copy fasta	HES7	chr17	8115592	8129106
HES7_chr17_8115592_8129106	0/0	a0002	230	1	0	0	0	1	0	copy fasta	HES7	chr17	8115592	8129106
HES7_chr17_8115592_8129106	0/0	a0003	230	1	1	0	0	0	0	copy fasta	HES7	chr17	8115592	8129106
HESX1_chr3_57192838_57204978	1/1	a0001	185	295	58	69	109	14	43	copy fasta	HESX1	chr3	57192838	57204978
HESX1_chr3_57192838_57204978	0/0	a0002	185	38	34	4	0	0	0	copy fasta	HESX1	chr3	57192838	57204978
HESX1_chr3_57192838_57204978	0/0	a0003	182	1	0	1	0	0	0	copy fasta	HESX1	chr3	57192838	57204978
HESX1_chr3_57192838_57204978	0/0	a0004	185	1	0	0	0	0	1	copy fasta	HESX1	chr3	57192838	57204978
HESX1_chr3_57192838_57204978	0/0	a0005	185	1	0	0	1	0	0	copy fasta	HESX1	chr3	57192838	57204978
HEXA_chr15_72335924_72381014	0/1	a0001	529	297	46	50	161	10	29	copy fasta	HEXA	chr15	72335924	72381014
HEXA_chr15_72335924_72381014	1/0	a0002	529	35	30	4	0	0	0	copy fasta	HEXA	chr15	72335924	72381014
HEXA_chr15_72335924_72381014	0/0	a0003	529	18	17	1	0	0	0	copy fasta	HEXA	chr15	72335924	72381014
HEXA_chr15_72335924_72381014	0/0	a0004	529	1	0	0	0	0	1	copy fasta	HEXA	chr15	72335924	72381014
HEXA_chr15_72335924_72381014	0/0	a0005	529	1	1	0	0	0	0	copy fasta	HEXA	chr15	72335924	72381014
HEXA_chr15_72335924_72381014	0/0	a0006	529	1	0	0	1	0	0	copy fasta	HEXA	chr15	72335924	72381014