JoGo: Joint Open Genome and Omics Platform

Search Genic Haplotype Catalog

Haplotypefield

Choose the ACTG layer used to define haplotypes.

Genename

e.g. ALDH2, HBB.

Chr

Chromosome number (1-22, X, Y).

GRCh38

1 = haplotype type matches GRCh38; 0 = does not match.

Chm13v2

1 = haplotype type matches CHM13v2; 0 = does not match.

Gpopname

Filter by superpopulation group.

Popname

Filter by population group.

Total

Minimum number of hits (≥).

Start

Start coordinate (GRCh38).

End

End coordinate (GRCh38).

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regionname	grch38/ chm13v2 1/0: The haplotype type is the same as GRCh38 0/1: The haplotype type is the same as CHM13v2 0/0: The haplotype type matches neither GRCh38 nor CHM13v2 1/1: The haplotype type is the same on both GRCh38 and CHM13v2	ahapid	alen	total	AFR	AMR	EAS	EUR	SAS	aseq	genename	chr	start	end
HEXA_chr15_72335924_72381014	0/0	a0007	529	1	0	1	0	0	0	copy fasta	HEXA	chr15	72335924	72381014
HEXB_chr5_74680233_74726288	0/1	a0001	556	237	62	38	97	7	32	copy fasta	HEXB	chr5	74680233	74726288
HEXB_chr5_74680233_74726288	0/0	a0002	556	89	28	18	30	4	9	copy fasta	HEXB	chr5	74680233	74726288
HEXB_chr5_74680233_74726288	0/0	a0003	556	54	1	12	35	2	4	copy fasta	HEXB	chr5	74680233	74726288
HEXB_chr5_74680233_74726288	1/0	a0004	556	5	0	2	0	1	1	copy fasta	HEXB	chr5	74680233	74726288
HEXB_chr5_74680233_74726288	0/0	a0005	556	3	2	1	0	0	0	copy fasta	HEXB	chr5	74680233	74726288
HEXB_chr5_74680233_74726288	0/0	a0006	556	3	2	1	0	0	0	copy fasta	HEXB	chr5	74680233	74726288
HEXB_chr5_74680233_74726288	0/0	a0007	556	1	0	0	1	0	0	copy fasta	HEXB	chr5	74680233	74726288
HEXB_chr5_74680233_74726288	0/0	a0008	556	1	0	0	1	0	0	copy fasta	HEXB	chr5	74680233	74726288
HEXB_chr5_74680233_74726288	0/0	a0009	556	1	0	0	1	0	0	copy fasta	HEXB	chr5	74680233	74726288
HEXB_chr5_74680233_74726288	0/0	a0010	556	1	1	0	0	0	0	copy fasta	HEXB	chr5	74680233	74726288
HEXB_chr5_74680233_74726288	0/0	a0011	556	1	0	0	1	0	0	copy fasta	HEXB	chr5	74680233	74726288
HEXD_chr17_82413347_82447645	0/0	a0001	486	264	46	39	156	5	18	copy fasta	HEXD	chr17	82413347	82447645
HEXD_chr17_82413347_82447645	1/1	a0002	486	126	46	29	14	11	24	copy fasta	HEXD	chr17	82413347	82447645
HEXD_chr17_82413347_82447645	0/0	a0003	486	3	2	1	0	0	0	copy fasta	HEXD	chr17	82413347	82447645
HEXD_chr17_82413347_82447645	0/0	a0004	486	2	0	2	0	0	0	copy fasta	HEXD	chr17	82413347	82447645
HEXD_chr17_82413347_82447645	0/0	a0005	486	1	0	1	0	0	0	copy fasta	HEXD	chr17	82413347	82447645
HEXD_chr17_82413347_82447645	0/0	a0006	486	1	0	0	1	0	0	copy fasta	HEXD	chr17	82413347	82447645
HEXD_chr17_82413347_82447645	0/0	a0007	486	1	0	0	1	0	0	copy fasta	HEXD	chr17	82413347	82447645
HEXD_chr17_82413347_82447645	0/0	a0008	486	1	1	0	0	0	0	copy fasta	HEXD	chr17	82413347	82447645
HEXD_chr17_82413347_82447645	0/0	a0009	486	1	1	0	0	0	0	copy fasta	HEXD	chr17	82413347	82447645
HEXIM1_chr17_45143475_45157099	1/1	a0001	359	438	93	71	208	16	48	copy fasta	HEXIM1	chr17	45143475	45157099
HEXIM1_chr17_45143475_45157099	0/0	a0002	359	1	0	1	0	0	0	copy fasta	HEXIM1	chr17	45143475	45157099
HEXIM1_chr17_45143475_45157099	0/0	a0003	359	1	0	0	1	0	0	copy fasta	HEXIM1	chr17	45143475	45157099
HEXIM1_chr17_45143475_45157099	0/0	a0004	359	1	0	0	1	0	0	copy fasta	HEXIM1	chr17	45143475	45157099
HEXIM1_chr17_45143475_45157099	0/0	a0005	359	1	1	0	0	0	0	copy fasta	HEXIM1	chr17	45143475	45157099
HEXIM2_chr17_45156875_45175035	1/1	a0001	286	434	87	80	201	16	48	copy fasta	HEXIM2	chr17	45156875	45175035
HEXIM2_chr17_45156875_45175035	0/0	a0002	286	7	7	0	0	0	0	copy fasta	HEXIM2	chr17	45156875	45175035
HEXIM2_chr17_45156875_45175035	0/0	a0003	286	1	0	0	1	0	0	copy fasta	HEXIM2	chr17	45156875	45175035
HEXIM2_chr17_45156875_45175035	0/0	a0004	286	1	0	0	1	0	0	copy fasta	HEXIM2	chr17	45156875	45175035
HEXIM2_chr17_45156875_45175035	0/0	a0005	286	1	0	0	1	0	0	copy fasta	HEXIM2	chr17	45156875	45175035
HEXIM2_chr17_45156875_45175035	0/0	a0006	286	1	0	0	1	0	0	copy fasta	HEXIM2	chr17	45156875	45175035
HEXIM2_chr17_45156875_45175035	0/0	a0007	286	1	0	0	1	0	0	copy fasta	HEXIM2	chr17	45156875	45175035
HEY1_chr8_79759010_79772767	1/1	a0001	304	460	96	84	218	16	44	copy fasta	HEY1	chr8	79759010	79772767
HEY2_chr6_125744632_125766269	1/1	a0001	337	395	87	72	181	17	36	copy fasta	HEY2	chr6	125744632	125766269
HEY2_chr6_125744632_125766269	0/0	a0002	337	2	0	0	2	0	0	copy fasta	HEY2	chr6	125744632	125766269
HEY2_chr6_125744632_125766269	0/0	a0003	337	1	1	0	0	0	0	copy fasta	HEY2	chr6	125744632	125766269
HEY2_chr6_125744632_125766269	0/0	a0004	337	1	0	0	0	1	0	copy fasta	HEY2	chr6	125744632	125766269
HEY2_chr6_125744632_125766269	0/0	a0005	337	1	0	0	1	0	0	copy fasta	HEY2	chr6	125744632	125766269
HEYL_chr1_39618435_39644643	0/1	a0001	328	429	88	79	199	16	46	copy fasta	HEYL	chr1	39618435	39644643
HEYL_chr1_39618435_39644643	1/0	a0002	328	3	0	0	0	0	2	copy fasta	HEYL	chr1	39618435	39644643
HEYL_chr1_39618435_39644643	0/0	a0003	328	2	2	0	0	0	0	copy fasta	HEYL	chr1	39618435	39644643
HEYL_chr1_39618435_39644643	0/0	a0004	328	1	0	0	1	0	0	copy fasta	HEYL	chr1	39618435	39644643
HEYL_chr1_39618435_39644643	0/0	a0005	55	1	0	0	1	0	0	copy fasta	HEYL	chr1	39618435	39644643
HEYL_chr1_39618435_39644643	0/0	a0006	328	1	0	1	0	0	0	copy fasta	HEYL	chr1	39618435	39644643
HEYL_chr1_39618435_39644643	0/0	a0007	328	1	0	0	1	0	0	copy fasta	HEYL	chr1	39618435	39644643
HEYL_chr1_39618435_39644643	0/0	a0008	328	1	1	0	0	0	0	copy fasta	HEYL	chr1	39618435	39644643
HEYL_chr1_39618435_39644643	0/0	a0009	328	1	1	0	0	0	0	copy fasta	HEYL	chr1	39618435	39644643
HFE_chr6_26082429_26103343	1/0	a0001	348	369	98	68	155	7	40	copy fasta	HFE	chr6	26082429	26103343
HFE_chr6_26082429_26103343	0/1	a0002	348	26	1	5	7	5	7	copy fasta	HFE	chr6	26082429	26103343