JoGo: Joint Open Genome and Omics Platform

Search Genic Haplotype Catalog

Haplotypefield

Choose the ACTG layer used to define haplotypes.

Genename

e.g. ALDH2, HBB.

Chr

Chromosome number (1-22, X, Y).

GRCh38

1 = haplotype type matches GRCh38; 0 = does not match.

Chm13v2

1 = haplotype type matches CHM13v2; 0 = does not match.

Gpopname

Filter by superpopulation group.

Popname

Filter by population group.

Total

Minimum number of hits (≥).

Start

Start coordinate (GRCh38).

End

End coordinate (GRCh38).

Sort By

Choose a field to sort by.

Order by

Ascending / Descending.

Show

Results per page.

regionname	grch38/ chm13v2 1/0: The haplotype type is the same as GRCh38 0/1: The haplotype type is the same as CHM13v2 0/0: The haplotype type matches neither GRCh38 nor CHM13v2 1/1: The haplotype type is the same on both GRCh38 and CHM13v2	ahapid	alen	total	AFR	AMR	EAS	EUR	SAS	aseq	genename	chr	start	end
IBTK_chr6_82164987_82252744	0/0	a0007	1353	1	1	0	0	0	0	copy fasta	IBTK	chr6	82164987	82252744
ICA1L_chr2_202768176_202876766	1/1	a0001	482	322	73	62	146	14	25	copy fasta	ICA1L	chr2	202768176	202876766
ICA1L_chr2_202768176_202876766	0/0	a0002	482	5	5	0	0	0	0	copy fasta	ICA1L	chr2	202768176	202876766
ICA1L_chr2_202768176_202876766	0/0	a0003	482	2	2	0	0	0	0	copy fasta	ICA1L	chr2	202768176	202876766
ICA1L_chr2_202768176_202876766	0/0	a0004	482	1	0	0	0	0	1	copy fasta	ICA1L	chr2	202768176	202876766
ICA1_chr7_8108184_8267167	1/1	a0001	483	273	81	46	104	8	32	copy fasta	ICA1	chr7	8108184	8267167
ICA1_chr7_8108184_8267167	0/0	a0002	483	1	1	0	0	0	0	copy fasta	ICA1	chr7	8108184	8267167
ICAM1_chr19_10266120_10291615	1/1	a0001	532	254	60	45	120	7	20	copy fasta	ICAM1	chr19	10266120	10291615
ICAM1_chr19_10266120_10291615	0/0	a0002	532	144	16	29	67	7	25	copy fasta	ICAM1	chr19	10266120	10291615
ICAM1_chr19_10266120_10291615	0/0	a0003	532	15	2	11	0	2	0	copy fasta	ICAM1	chr19	10266120	10291615
ICAM1_chr19_10266120_10291615	0/0	a0004	532	15	14	0	0	1	0	copy fasta	ICAM1	chr19	10266120	10291615
ICAM1_chr19_10266120_10291615	0/0	a0005	532	9	0	0	8	0	1	copy fasta	ICAM1	chr19	10266120	10291615
ICAM1_chr19_10266120_10291615	0/0	a0006	532	4	0	3	0	1	0	copy fasta	ICAM1	chr19	10266120	10291615
ICAM1_chr19_10266120_10291615	0/0	a0007	532	3	3	0	0	0	0	copy fasta	ICAM1	chr19	10266120	10291615
ICAM1_chr19_10266120_10291615	0/0	a0008	532	1	1	0	0	0	0	copy fasta	ICAM1	chr19	10266120	10291615
ICAM1_chr19_10266120_10291615	0/0	a0009	532	1	1	0	0	0	0	copy fasta	ICAM1	chr19	10266120	10291615
ICAM1_chr19_10266120_10291615	0/0	a0010	532	1	1	0	0	0	0	copy fasta	ICAM1	chr19	10266120	10291615
ICAM1_chr19_10266120_10291615	0/0	a0011	532	1	1	0	0	0	0	copy fasta	ICAM1	chr19	10266120	10291615
ICAM1_chr19_10266120_10291615	0/0	a0012	532	1	0	0	1	0	0	copy fasta	ICAM1	chr19	10266120	10291615
ICAM1_chr19_10266120_10291615	0/0	a0013	532	1	0	0	1	0	0	copy fasta	ICAM1	chr19	10266120	10291615
ICAM1_chr19_10266120_10291615	0/0	a0014	532	1	1	0	0	0	0	copy fasta	ICAM1	chr19	10266120	10291615
ICAM1_chr19_10266120_10291615	0/0	a0015	532	1	0	0	1	0	0	copy fasta	ICAM1	chr19	10266120	10291615
ICAM2_chr17_63997595_64025633	1/1	a0001	275	388	86	76	165	18	41	copy fasta	ICAM2	chr17	63997595	64025633
ICAM2_chr17_63997595_64025633	0/0	a0002	275	2	2	0	0	0	0	copy fasta	ICAM2	chr17	63997595	64025633
ICAM2_chr17_63997595_64025633	0/0	a0003	275	1	0	0	1	0	0	copy fasta	ICAM2	chr17	63997595	64025633
ICAM2_chr17_63997595_64025633	0/0	a0004	275	1	0	0	0	0	1	copy fasta	ICAM2	chr17	63997595	64025633
ICAM3_chr19_10328776_10344624	1/1	a0001	547	351	69	65	174	11	30	copy fasta	ICAM3	chr19	10328776	10344624
ICAM3_chr19_10328776_10344624	0/0	a0002	547	47	4	13	15	4	11	copy fasta	ICAM3	chr19	10328776	10344624
ICAM3_chr19_10328776_10344624	0/0	a0003	547	20	14	1	0	2	3	copy fasta	ICAM3	chr19	10328776	10344624
ICAM3_chr19_10328776_10344624	0/0	a0004	547	10	0	0	10	0	0	copy fasta	ICAM3	chr19	10328776	10344624
ICAM3_chr19_10328776_10344624	0/0	a0005	547	3	3	0	0	0	0	copy fasta	ICAM3	chr19	10328776	10344624
ICAM3_chr19_10328776_10344624	0/0	a0006	547	1	1	0	0	0	0	copy fasta	ICAM3	chr19	10328776	10344624
ICAM3_chr19_10328776_10344624	0/0	a0007	547	1	1	0	0	0	0	copy fasta	ICAM3	chr19	10328776	10344624
ICAM3_chr19_10328776_10344624	0/0	a0008	547	1	0	0	0	0	1	copy fasta	ICAM3	chr19	10328776	10344624
ICAM3_chr19_10328776_10344624	0/0	a0009	547	1	0	0	0	0	1	copy fasta	ICAM3	chr19	10328776	10344624
ICAM3_chr19_10328776_10344624	0/0	a0010	547	1	0	0	0	1	0	copy fasta	ICAM3	chr19	10328776	10344624
ICAM3_chr19_10328776_10344624	0/0	a0011	547	1	1	0	0	0	0	copy fasta	ICAM3	chr19	10328776	10344624
ICAM3_chr19_10328776_10344624	0/0	a0012	547	1	0	0	1	0	0	copy fasta	ICAM3	chr19	10328776	10344624
ICAM3_chr19_10328776_10344624	0/0	a0013	547	1	0	1	0	0	0	copy fasta	ICAM3	chr19	10328776	10344624
ICAM3_chr19_10328776_10344624	0/0	a0014	547	1	1	0	0	0	0	copy fasta	ICAM3	chr19	10328776	10344624
ICAM4_chr19_10281955_10293520	1/1	a0001	271	422	88	84	188	16	44	copy fasta	ICAM4	chr19	10281955	10293520
ICAM4_chr19_10281955_10293520	0/0	a0002	271	6	6	0	0	0	0	copy fasta	ICAM4	chr19	10281955	10293520
ICAM4_chr19_10281955_10293520	0/0	a0003	271	1	0	0	1	0	0	copy fasta	ICAM4	chr19	10281955	10293520
ICAM4_chr19_10281955_10293520	0/0	a0004	271	1	0	0	1	0	0	copy fasta	ICAM4	chr19	10281955	10293520
ICAM5_chr19_10284952_10301778	1/1	a0001	924	265	82	43	103	9	26	copy fasta	ICAM5	chr19	10284952	10301778
ICAM5_chr19_10284952_10301778	0/0	a0002	924	129	5	38	66	6	14	copy fasta	ICAM5	chr19	10284952	10301778
ICAM5_chr19_10284952_10301778	0/0	a0003	522	20	7	4	8	0	1	copy fasta	ICAM5	chr19	10284952	10301778
ICAM5_chr19_10284952_10301778	0/0	a0004	522	15	2	3	6	1	3	copy fasta	ICAM5	chr19	10284952	10301778
ICAM5_chr19_10284952_10301778	0/0	a0005	664	1	0	0	1	0	0	copy fasta	ICAM5	chr19	10284952	10301778
ICAM5_chr19_10284952_10301778	0/0	a0006	924	1	1	0	0	0	0	copy fasta	ICAM5	chr19	10284952	10301778