JoGo: Joint Open Genome and Omics Platform

Search Genic Haplotype Catalog

Haplotypefield

Choose the ACTG layer used to define haplotypes.

Genename

e.g. ALDH2, HBB.

Chr

Chromosome number (1-22, X, Y).

GRCh38

1 = haplotype type matches GRCh38; 0 = does not match.

Chm13v2

1 = haplotype type matches CHM13v2; 0 = does not match.

Gpopname

Filter by superpopulation group.

Popname

Filter by population group.

Total

Minimum number of hits (≥).

Start

Start coordinate (GRCh38).

End

End coordinate (GRCh38).

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regionname	grch38/ chm13v2 1/0: The haplotype type is the same as GRCh38 0/1: The haplotype type is the same as CHM13v2 0/0: The haplotype type matches neither GRCh38 nor CHM13v2 1/1: The haplotype type is the same on both GRCh38 and CHM13v2	ahapid	alen	total	AFR	AMR	EAS	EUR	SAS	aseq	genename	chr	start	end
IFNA16_chr9_21211373_21222311	0/0	a0006	189	1	1	0	0	0	0	copy fasta	IFNA16	chr9	21211373	21222311
IFNA17_chr9_21222243_21233222	1/1	a0001	189	266	58	60	93	10	43	copy fasta	IFNA17	chr9	21222243	21233222
IFNA17_chr9_21222243_21233222	0/0	a0002	189	174	33	21	113	5	2	copy fasta	IFNA17	chr9	21222243	21233222
IFNA17_chr9_21222243_21233222	0/0	a0003	189	5	1	3	0	1	0	copy fasta	IFNA17	chr9	21222243	21233222
IFNA17_chr9_21222243_21233222	0/0	a0004	189	4	4	0	0	0	0	copy fasta	IFNA17	chr9	21222243	21233222
IFNA17_chr9_21222243_21233222	0/0	a0005	189	2	0	0	0	0	2	copy fasta	IFNA17	chr9	21222243	21233222
IFNA17_chr9_21222243_21233222	0/0	a0006	189	2	2	0	0	0	0	copy fasta	IFNA17	chr9	21222243	21233222
IFNA17_chr9_21222243_21233222	0/0	a0007	189	1	0	0	0	0	1	copy fasta	IFNA17	chr9	21222243	21233222
IFNA17_chr9_21222243_21233222	0/0	a0008	189	1	0	0	1	0	0	copy fasta	IFNA17	chr9	21222243	21233222
IFNA17_chr9_21222243_21233222	0/0	a0009	189	1	1	0	0	0	0	copy fasta	IFNA17	chr9	21222243	21233222
IFNA17_chr9_21222243_21233222	0/0	a0010	189	1	0	0	1	0	0	copy fasta	IFNA17	chr9	21222243	21233222
IFNA17_chr9_21222243_21233222	0/0	a0011	189	1	1	0	0	0	0	copy fasta	IFNA17	chr9	21222243	21233222
IFNA1_chr9_21435439_21446316	1/1	a0001	189	410	66	76	206	15	45	copy fasta	IFNA1	chr9	21435439	21446316
IFNA1_chr9_21435439_21446316	0/0	a0002	189	24	20	1	0	0	3	copy fasta	IFNA1	chr9	21435439	21446316
IFNA1_chr9_21435439_21446316	0/0	a0003	189	8	8	0	0	0	0	copy fasta	IFNA1	chr9	21435439	21446316
IFNA1_chr9_21435439_21446316	0/0	a0004	189	4	4	0	0	0	0	copy fasta	IFNA1	chr9	21435439	21446316
IFNA1_chr9_21435439_21446316	0/0	a0005	189	4	0	3	0	1	0	copy fasta	IFNA1	chr9	21435439	21446316
IFNA21_chr9_21160637_21171660	1/1	a0001	189	429	89	85	192	13	48	copy fasta	IFNA21	chr9	21160637	21171660
IFNA21_chr9_21160637_21171660	0/0	a0002	189	24	0	0	23	0	1	copy fasta	IFNA21	chr9	21160637	21171660
IFNA21_chr9_21160637_21171660	0/0	a0003	189	4	1	1	0	1	1	copy fasta	IFNA21	chr9	21160637	21171660
IFNA21_chr9_21160637_21171660	0/0	a0004	189	2	0	0	2	0	0	copy fasta	IFNA21	chr9	21160637	21171660
IFNA21_chr9_21160637_21171660	0/0	a0005	189	2	2	0	0	0	0	copy fasta	IFNA21	chr9	21160637	21171660
IFNA21_chr9_21160637_21171660	0/0	a0006	189	1	0	0	1	0	0	copy fasta	IFNA21	chr9	21160637	21171660
IFNA21_chr9_21160637_21171660	0/0	a0007	189	1	1	0	0	0	0	copy fasta	IFNA21	chr9	21160637	21171660
IFNA21_chr9_21160637_21171660	0/0	a0008	189	1	1	0	0	0	0	copy fasta	IFNA21	chr9	21160637	21171660
IFNA2_chr9_21379255_21390398	1/1	a0001	188	461	79	84	232	16	48	copy fasta	IFNA2	chr9	21379255	21390398
IFNA2_chr9_21379255_21390398	0/0	a0002	188	5	5	0	0	0	0	copy fasta	IFNA2	chr9	21379255	21390398
IFNA2_chr9_21379255_21390398	0/0	a0003	188	5	5	0	0	0	0	copy fasta	IFNA2	chr9	21379255	21390398
IFNA2_chr9_21379255_21390398	0/0	a0004	188	3	3	0	0	0	0	copy fasta	IFNA2	chr9	21379255	21390398
IFNA2_chr9_21379255_21390398	0/0	a0005	188	2	2	0	0	0	0	copy fasta	IFNA2	chr9	21379255	21390398
IFNA2_chr9_21379255_21390398	0/0	a0006	188	2	0	0	2	0	0	copy fasta	IFNA2	chr9	21379255	21390398
IFNA4_chr9_21181618_21192587	0/1	a0001	189	192	32	34	89	6	30	copy fasta	IFNA4	chr9	21181618	21192587
IFNA4_chr9_21181618_21192587	0/0	a0002	189	136	30	19	81	5	1	copy fasta	IFNA4	chr9	21181618	21192587
IFNA4_chr9_21181618_21192587	1/0	a0003	189	88	25	20	22	5	15	copy fasta	IFNA4	chr9	21181618	21192587
IFNA4_chr9_21181618_21192587	0/0	a0004	189	3	3	0	0	0	0	copy fasta	IFNA4	chr9	21181618	21192587
IFNA4_chr9_21181618_21192587	0/0	a0005	189	3	3	0	0	0	0	copy fasta	IFNA4	chr9	21181618	21192587
IFNA4_chr9_21181618_21192587	0/0	a0006	189	1	0	1	0	0	0	copy fasta	IFNA4	chr9	21181618	21192587
IFNA4_chr9_21181618_21192587	0/0	a0007	189	1	0	0	1	0	0	copy fasta	IFNA4	chr9	21181618	21192587
IFNA4_chr9_21181618_21192587	0/0	a0008	189	1	0	0	1	0	0	copy fasta	IFNA4	chr9	21181618	21192587
IFNA4_chr9_21181618_21192587	0/0	a0009	189	1	1	0	0	0	0	copy fasta	IFNA4	chr9	21181618	21192587
IFNA4_chr9_21181618_21192587	0/0	a0010	189	1	0	0	1	0	0	copy fasta	IFNA4	chr9	21181618	21192587
IFNA4_chr9_21181618_21192587	0/0	a0011	189	1	0	0	1	0	0	copy fasta	IFNA4	chr9	21181618	21192587
IFNA5_chr9_21299326_21310313	1/1	a0001	189	448	98	76	213	15	44	copy fasta	IFNA5	chr9	21299326	21310313
IFNA5_chr9_21299326_21310313	0/0	a0002	189	3	2	1	0	0	0	copy fasta	IFNA5	chr9	21299326	21310313
IFNA5_chr9_21299326_21310313	0/0	a0003	114	1	0	0	0	1	0	copy fasta	IFNA5	chr9	21299326	21310313
IFNA5_chr9_21299326_21310313	0/0	a0004	189	1	0	0	1	0	0	copy fasta	IFNA5	chr9	21299326	21310313
IFNA5_chr9_21299326_21310313	0/0	a0005	189	1	0	1	0	0	0	copy fasta	IFNA5	chr9	21299326	21310313
IFNA6_chr9_21345318_21355887	1/1	a0001	189	410	91	68	195	16	38	copy fasta	IFNA6	chr9	21345318	21355887
IFNA6_chr9_21345318_21355887	0/0	a0002	189	6	2	2	0	2	0	copy fasta	IFNA6	chr9	21345318	21355887
IFNA6_chr9_21345318_21355887	0/0	a0003	189	2	0	0	2	0	0	copy fasta	IFNA6	chr9	21345318	21355887