JoGo: Joint Open Genome and Omics Platform

Search Genic Haplotype Catalog

Haplotypefield

Choose the ACTG layer used to define haplotypes.

Genename

e.g. ALDH2, HBB.

Chr

Chromosome number (1-22, X, Y).

GRCh38

1 = haplotype type matches GRCh38; 0 = does not match.

Chm13v2

1 = haplotype type matches CHM13v2; 0 = does not match.

Gpopname

Filter by superpopulation group.

Popname

Filter by population group.

Total

Minimum number of hits (≥).

Start

Start coordinate (GRCh38).

End

End coordinate (GRCh38).

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regionname	grch38/ chm13v2 1/0: The haplotype type is the same as GRCh38 0/1: The haplotype type is the same as CHM13v2 0/0: The haplotype type matches neither GRCh38 nor CHM13v2 1/1: The haplotype type is the same on both GRCh38 and CHM13v2	ahapid	alen	total	AFR	AMR	EAS	EUR	SAS	aseq	genename	chr	start	end
IFNL3_chr19_39238553_39250006	0/0	a0012	196	1	0	0	0	0	1	copy fasta	IFNL3	chr19	39238553	39250006
IFNL3_chr19_39238553_39250006	0/0	a0013	196	1	1	0	0	0	0	copy fasta	IFNL3	chr19	39238553	39250006
IFNL3_chr19_39238553_39250006	0/0	a0014	196	1	1	0	0	0	0	copy fasta	IFNL3	chr19	39238553	39250006
IFNL3_chr19_39238553_39250006	0/0	a0015	196	1	1	0	0	0	0	copy fasta	IFNL3	chr19	39238553	39250006
IFNL3_chr19_39238553_39250006	0/0	a0016	196	1	1	0	0	0	0	copy fasta	IFNL3	chr19	39238553	39250006
IFNL3_chr19_39238553_39250006	0/0	a0017	196	1	1	0	0	0	0	copy fasta	IFNL3	chr19	39238553	39250006
IFNL3_chr19_39238553_39250006	0/0	a0018	196	1	1	0	0	0	0	copy fasta	IFNL3	chr19	39238553	39250006
IFNLR1_chr1_24149168_24192289	1/1	a0001	520	372	79	67	165	14	45	copy fasta	IFNLR1	chr1	24149168	24192289
IFNLR1_chr1_24149168_24192289	0/0	a0002	520	10	6	4	0	0	0	copy fasta	IFNLR1	chr1	24149168	24192289
IFNLR1_chr1_24149168_24192289	0/0	a0003	520	4	4	0	0	0	0	copy fasta	IFNLR1	chr1	24149168	24192289
IFNLR1_chr1_24149168_24192289	0/0	a0004	520	3	0	0	0	2	1	copy fasta	IFNLR1	chr1	24149168	24192289
IFNLR1_chr1_24149168_24192289	0/0	a0005	520	1	0	0	1	0	0	copy fasta	IFNLR1	chr1	24149168	24192289
IFNLR1_chr1_24149168_24192289	0/0	a0006	520	1	0	1	0	0	0	copy fasta	IFNLR1	chr1	24149168	24192289
IFNLR1_chr1_24149168_24192289	0/0	a0007	520	1	0	0	1	0	0	copy fasta	IFNLR1	chr1	24149168	24192289
IFNLR1_chr1_24149168_24192289	0/0	a0008	520	1	0	0	1	0	0	copy fasta	IFNLR1	chr1	24149168	24192289
IFNLR1_chr1_24149168_24192289	0/0	a0009	520	1	1	0	0	0	0	copy fasta	IFNLR1	chr1	24149168	24192289
IFNLR1_chr1_24149168_24192289	0/0	a0010	520	1	1	0	0	0	0	copy fasta	IFNLR1	chr1	24149168	24192289
IFNLR1_chr1_24149168_24192289	0/0	a0011	520	1	1	0	0	0	0	copy fasta	IFNLR1	chr1	24149168	24192289
IFNW1_chr9_21135632_21146832	1/1	a0001	195	453	99	86	200	18	48	copy fasta	IFNW1	chr9	21135632	21146832
IFNW1_chr9_21135632_21146832	0/0	a0002	195	21	0	0	20	0	1	copy fasta	IFNW1	chr9	21135632	21146832
IFNW1_chr9_21135632_21146832	0/0	a0003	195	3	0	0	3	0	0	copy fasta	IFNW1	chr9	21135632	21146832
IFNW1_chr9_21135632_21146832	0/0	a0004	195	1	0	0	1	0	0	copy fasta	IFNW1	chr9	21135632	21146832
IFNW1_chr9_21135632_21146832	0/0	a0005	195	1	0	0	0	0	1	copy fasta	IFNW1	chr9	21135632	21146832
IFNW1_chr9_21135632_21146832	0/0	a0006	183	1	1	0	0	0	0	copy fasta	IFNW1	chr9	21135632	21146832
IFRD1_chr7_112445460_112482203	1/1	a0001	451	370	94	73	141	16	44	copy fasta	IFRD1	chr7	112445460	112482203
IFRD1_chr7_112445460_112482203	0/0	a0002	451	2	0	0	2	0	0	copy fasta	IFRD1	chr7	112445460	112482203
IFRD1_chr7_112445460_112482203	0/0	a0003	451	1	0	0	1	0	0	copy fasta	IFRD1	chr7	112445460	112482203
IFRD1_chr7_112445460_112482203	0/0	a0004	451	1	0	1	0	0	0	copy fasta	IFRD1	chr7	112445460	112482203
IFRD2_chr3_50282732_50297429	1/1	a0001	442	321	64	64	144	16	31	copy fasta	IFRD2	chr3	50282732	50297429
IFRD2_chr3_50282732_50297429	0/0	a0002	442	16	14	2	0	0	0	copy fasta	IFRD2	chr3	50282732	50297429
IFRD2_chr3_50282732_50297429	0/0	a0003	442	12	0	2	9	0	1	copy fasta	IFRD2	chr3	50282732	50297429
IFRD2_chr3_50282732_50297429	0/0	a0004	442	8	8	0	0	0	0	copy fasta	IFRD2	chr3	50282732	50297429
IFRD2_chr3_50282732_50297429	0/0	a0005	442	4	4	0	0	0	0	copy fasta	IFRD2	chr3	50282732	50297429
IFRD2_chr3_50282732_50297429	0/0	a0006	442	2	0	0	0	0	2	copy fasta	IFRD2	chr3	50282732	50297429
IFRD2_chr3_50282732_50297429	0/0	a0007	442	1	0	0	1	0	0	copy fasta	IFRD2	chr3	50282732	50297429
IFT122_chr3_129435224_129525507	1/0	a0001	1241	309	83	52	131	8	34	copy fasta	IFT122	chr3	129435224	129525507
IFT122_chr3_129435224_129525507	0/1	a0002	1241	31	9	5	9	2	5	copy fasta	IFT122	chr3	129435224	129525507
IFT122_chr3_129435224_129525507	0/0	a0003	1241	5	0	0	5	0	0	copy fasta	IFT122	chr3	129435224	129525507
IFT122_chr3_129435224_129525507	0/0	a0004	1241	3	0	0	2	0	1	copy fasta	IFT122	chr3	129435224	129525507
IFT122_chr3_129435224_129525507	0/0	a0005	1241	1	0	1	0	0	0	copy fasta	IFT122	chr3	129435224	129525507
IFT122_chr3_129435224_129525507	0/0	a0006	1241	1	0	1	0	0	0	copy fasta	IFT122	chr3	129435224	129525507
IFT122_chr3_129435224_129525507	0/0	a0007	1241	1	0	0	1	0	0	copy fasta	IFT122	chr3	129435224	129525507
IFT122_chr3_129435224_129525507	0/0	a0008	1241	1	0	0	0	0	1	copy fasta	IFT122	chr3	129435224	129525507
IFT122_chr3_129435224_129525507	0/0	a0009	1241	1	0	1	0	0	0	copy fasta	IFT122	chr3	129435224	129525507
IFT122_chr3_129435224_129525507	0/0	a0010	1241	1	0	0	1	0	0	copy fasta	IFT122	chr3	129435224	129525507
IFT122_chr3_129435224_129525507	0/0	a0011	1241	1	0	0	0	0	1	copy fasta	IFT122	chr3	129435224	129525507
IFT122_chr3_129435224_129525507	0/0	a0012	1241	1	0	0	1	0	0	copy fasta	IFT122	chr3	129435224	129525507
IFT140_chr16_1505427_1617072	1/1	a0001	1462	212	54	31	87	6	32	copy fasta	IFT140	chr16	1505427	1617072
IFT140_chr16_1505427_1617072	0/0	a0002	1462	29	0	7	19	1	2	copy fasta	IFT140	chr16	1505427	1617072
IFT140_chr16_1505427_1617072	0/0	a0003	1462	27	7	2	10	2	6	copy fasta	IFT140	chr16	1505427	1617072