JoGo: Joint Open Genome and Omics Platform

Search Genic Haplotype Catalog

Haplotypefield

Choose the ACTG layer used to define haplotypes.

Genename

e.g. ALDH2, HBB.

Chr

Chromosome number (1-22, X, Y).

GRCh38

1 = haplotype type matches GRCh38; 0 = does not match.

Chm13v2

1 = haplotype type matches CHM13v2; 0 = does not match.

Gpopname

Filter by superpopulation group.

Popname

Filter by population group.

Total

Minimum number of hits (≥).

Start

Start coordinate (GRCh38).

End

End coordinate (GRCh38).

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regionname	grch38/ chm13v2 1/0: The haplotype type is the same as GRCh38 0/1: The haplotype type is the same as CHM13v2 0/0: The haplotype type matches neither GRCh38 nor CHM13v2 1/1: The haplotype type is the same on both GRCh38 and CHM13v2	ahapid	alen	total	AFR	AMR	EAS	EUR	SAS	aseq	genename	chr	start	end
IFT140_chr16_1505427_1617072	0/0	a0004	1462	9	0	9	0	0	0	copy fasta	IFT140	chr16	1505427	1617072
IFT140_chr16_1505427_1617072	0/0	a0005	1462	8	6	1	1	0	0	copy fasta	IFT140	chr16	1505427	1617072
IFT140_chr16_1505427_1617072	0/0	a0006	1462	6	6	0	0	0	0	copy fasta	IFT140	chr16	1505427	1617072
IFT140_chr16_1505427_1617072	0/0	a0007	1462	5	4	1	0	0	0	copy fasta	IFT140	chr16	1505427	1617072
IFT140_chr16_1505427_1617072	0/0	a0008	1462	4	4	0	0	0	0	copy fasta	IFT140	chr16	1505427	1617072
IFT140_chr16_1505427_1617072	0/0	a0009	1462	4	0	3	0	1	0	copy fasta	IFT140	chr16	1505427	1617072
IFT140_chr16_1505427_1617072	0/0	a0010	1462	4	0	1	3	0	0	copy fasta	IFT140	chr16	1505427	1617072
IFT140_chr16_1505427_1617072	0/0	a0011	1462	4	4	0	0	0	0	copy fasta	IFT140	chr16	1505427	1617072
IFT140_chr16_1505427_1617072	0/0	a0012	1462	2	0	0	2	0	0	copy fasta	IFT140	chr16	1505427	1617072
IFT140_chr16_1505427_1617072	0/0	a0013	1462	2	0	2	0	0	0	copy fasta	IFT140	chr16	1505427	1617072
IFT140_chr16_1505427_1617072	0/0	a0014	1462	1	1	0	0	0	0	copy fasta	IFT140	chr16	1505427	1617072
IFT140_chr16_1505427_1617072	0/0	a0015	1462	1	1	0	0	0	0	copy fasta	IFT140	chr16	1505427	1617072
IFT140_chr16_1505427_1617072	0/0	a0016	1462	1	1	0	0	0	0	copy fasta	IFT140	chr16	1505427	1617072
IFT140_chr16_1505427_1617072	0/0	a0017	1462	1	0	0	1	0	0	copy fasta	IFT140	chr16	1505427	1617072
IFT140_chr16_1505427_1617072	0/0	a0018	1462	1	0	0	1	0	0	copy fasta	IFT140	chr16	1505427	1617072
IFT140_chr16_1505427_1617072	0/0	a0019	1462	1	0	0	1	0	0	copy fasta	IFT140	chr16	1505427	1617072
IFT140_chr16_1505427_1617072	0/0	a0020	1462	1	0	0	1	0	0	copy fasta	IFT140	chr16	1505427	1617072
IFT140_chr16_1505427_1617072	0/0	a0021	1462	1	0	0	1	0	0	copy fasta	IFT140	chr16	1505427	1617072
IFT140_chr16_1505427_1617072	0/0	a0022	1462	1	0	0	1	0	0	copy fasta	IFT140	chr16	1505427	1617072
IFT140_chr16_1505427_1617072	0/0	a0023	1462	1	0	0	1	0	0	copy fasta	IFT140	chr16	1505427	1617072
IFT140_chr16_1505427_1617072	0/0	a0024	1462	1	0	0	1	0	0	copy fasta	IFT140	chr16	1505427	1617072
IFT140_chr16_1505427_1617072	0/0	a0025	1462	1	0	0	1	0	0	copy fasta	IFT140	chr16	1505427	1617072
IFT140_chr16_1505427_1617072	0/0	a0026	1462	1	1	0	0	0	0	copy fasta	IFT140	chr16	1505427	1617072
IFT140_chr16_1505427_1617072	0/0	a0027	1462	1	1	0	0	0	0	copy fasta	IFT140	chr16	1505427	1617072
IFT140_chr16_1505427_1617072	0/0	a0028	1462	1	1	0	0	0	0	copy fasta	IFT140	chr16	1505427	1617072
IFT140_chr16_1505427_1617072	0/0	a0029	1462	1	0	1	0	0	0	copy fasta	IFT140	chr16	1505427	1617072
IFT140_chr16_1505427_1617072	0/0	a0030	1462	1	1	0	0	0	0	copy fasta	IFT140	chr16	1505427	1617072
IFT140_chr16_1505427_1617072	0/0	a0031	1462	1	0	0	1	0	0	copy fasta	IFT140	chr16	1505427	1617072
IFT172_chr2_27439377_27494743	1/1	a0001	1749	209	73	51	50	10	23	copy fasta	IFT172	chr2	27439377	27494743
IFT172_chr2_27439377_27494743	0/0	a0002	1749	2	2	0	0	0	0	copy fasta	IFT172	chr2	27439377	27494743
IFT172_chr2_27439377_27494743	0/0	a0003	1749	1	0	0	0	0	1	copy fasta	IFT172	chr2	27439377	27494743
IFT172_chr2_27439377_27494743	0/0	a0004	1749	1	0	0	0	0	1	copy fasta	IFT172	chr2	27439377	27494743
IFT172_chr2_27439377_27494743	0/0	a0005	1749	1	0	0	1	0	0	copy fasta	IFT172	chr2	27439377	27494743
IFT172_chr2_27439377_27494743	0/0	a0006	1749	1	1	0	0	0	0	copy fasta	IFT172	chr2	27439377	27494743
IFT172_chr2_27439377_27494743	0/0	a0007	1749	1	0	0	0	0	1	copy fasta	IFT172	chr2	27439377	27494743
IFT172_chr2_27439377_27494743	0/0	a0008	1749	1	0	0	0	0	1	copy fasta	IFT172	chr2	27439377	27494743
IFT172_chr2_27439377_27494743	0/0	a0009	1749	1	1	0	0	0	0	copy fasta	IFT172	chr2	27439377	27494743
IFT172_chr2_27439377_27494743	0/0	a0010	1749	1	0	0	0	0	1	copy fasta	IFT172	chr2	27439377	27494743
IFT172_chr2_27439377_27494743	0/0	a0011	1749	1	1	0	0	0	0	copy fasta	IFT172	chr2	27439377	27494743
IFT172_chr2_27439377_27494743	0/0	a0012	1749	1	0	0	0	0	1	copy fasta	IFT172	chr2	27439377	27494743
IFT172_chr2_27439377_27494743	0/0	a0013	1749	1	0	1	0	0	0	copy fasta	IFT172	chr2	27439377	27494743
IFT172_chr2_27439377_27494743	0/0	a0014	1749	1	0	0	1	0	0	copy fasta	IFT172	chr2	27439377	27494743
IFT172_chr2_27439377_27494743	0/0	a0015	1749	1	0	0	0	0	1	copy fasta	IFT172	chr2	27439377	27494743
IFT20_chr17_28323326_28340472	1/1	a0001	132	357	86	68	146	14	41	copy fasta	IFT20	chr17	28323326	28340472
IFT20_chr17_28323326_28340472	0/0	a0002	132	3	0	0	0	0	3	copy fasta	IFT20	chr17	28323326	28340472
IFT22_chr7_101305914_101326812	1/1	a0001	185	410	94	64	194	16	40	copy fasta	IFT22	chr7	101305914	101326812
IFT25_chr1_53916561_53950699	1/1	a0001	144	281	94	37	110	12	26	copy fasta	IFT25	chr1	53916561	53950699
IFT25_chr1_53916561_53950699	0/0	a0002	144	1	0	1	0	0	0	copy fasta	IFT25	chr1	53916561	53950699
IFT27_chr22_36753211_36781119	1/1	a0001	186	287	81	69	89	12	34	copy fasta	IFT27	chr22	36753211	36781119
IFT27_chr22_36753211_36781119	0/0	a0002	186	6	6	0	0	0	0	copy fasta	IFT27	chr22	36753211	36781119