JoGo: Joint Open Genome and Omics Platform

Search Genic Haplotype Catalog

Haplotypefield

Choose the ACTG layer used to define haplotypes.

Genename

e.g. ALDH2, HBB.

Chr

Chromosome number (1-22, X, Y).

GRCh38

1 = haplotype type matches GRCh38; 0 = does not match.

Chm13v2

1 = haplotype type matches CHM13v2; 0 = does not match.

Gpopname

Filter by superpopulation group.

Popname

Filter by population group.

Total

Minimum number of hits (≥).

Start

Start coordinate (GRCh38).

End

End coordinate (GRCh38).

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regionname	grch38/ chm13v2 1/0: The haplotype type is the same as GRCh38 0/1: The haplotype type is the same as CHM13v2 0/0: The haplotype type matches neither GRCh38 nor CHM13v2 1/1: The haplotype type is the same on both GRCh38 and CHM13v2	ahapid	alen	total	AFR	AMR	EAS	EUR	SAS	aseq	genename	chr	start	end
IGFBP1_chr7_45883488_45898660	0/0	a0004	259	2	2	0	0	0	0	copy fasta	IGFBP1	chr7	45883488	45898660
IGFBP1_chr7_45883488_45898660	0/0	a0005	259	1	1	0	0	0	0	copy fasta	IGFBP1	chr7	45883488	45898660
IGFBP1_chr7_45883488_45898660	0/0	a0006	259	1	1	0	0	0	0	copy fasta	IGFBP1	chr7	45883488	45898660
IGFBP2_chr2_216628420_216669436	0/1	a0001	328	371	95	62	156	12	45	copy fasta	IGFBP2	chr2	216628420	216669436
IGFBP2_chr2_216628420_216669436	0/0	a0002	328	24	1	4	19	0	0	copy fasta	IGFBP2	chr2	216628420	216669436
IGFBP2_chr2_216628420_216669436	1/0	a0003	325	5	3	0	1	0	0	copy fasta	IGFBP2	chr2	216628420	216669436
IGFBP2_chr2_216628420_216669436	0/0	a0004	328	1	0	0	0	0	1	copy fasta	IGFBP2	chr2	216628420	216669436
IGFBP2_chr2_216628420_216669436	0/0	a0005	328	1	1	0	0	0	0	copy fasta	IGFBP2	chr2	216628420	216669436
IGFBP3_chr7_45907245_45926272	1/0	a0001	291	201	66	60	40	8	26	copy fasta	IGFBP3	chr7	45907245	45926272
IGFBP3_chr7_45907245_45926272	0/1	a0002	291	199	22	21	133	7	15	copy fasta	IGFBP3	chr7	45907245	45926272
IGFBP3_chr7_45907245_45926272	0/0	a0003	291	32	2	1	27	1	1	copy fasta	IGFBP3	chr7	45907245	45926272
IGFBP3_chr7_45907245_45926272	0/0	a0004	291	2	2	0	0	0	0	copy fasta	IGFBP3	chr7	45907245	45926272
IGFBP3_chr7_45907245_45926272	0/0	a0005	291	1	0	0	0	0	1	copy fasta	IGFBP3	chr7	45907245	45926272
IGFBP3_chr7_45907245_45926272	0/0	a0006	291	1	0	0	0	0	1	copy fasta	IGFBP3	chr7	45907245	45926272
IGFBP4_chr17_40438450_40462725	1/1	a0001	258	389	88	80	153	18	48	copy fasta	IGFBP4	chr17	40438450	40462725
IGFBP4_chr17_40438450_40462725	0/0	a0002	258	1	0	0	1	0	0	copy fasta	IGFBP4	chr17	40438450	40462725
IGFBP5_chr2_216667105_216700549	1/1	a0001	272	416	99	76	184	12	43	copy fasta	IGFBP5	chr2	216667105	216700549
IGFBP5_chr2_216667105_216700549	0/0	a0002	272	3	0	1	0	2	0	copy fasta	IGFBP5	chr2	216667105	216700549
IGFBP5_chr2_216667105_216700549	0/0	a0003	272	1	0	0	0	0	1	copy fasta	IGFBP5	chr2	216667105	216700549
IGFBP5_chr2_216667105_216700549	0/0	a0004	272	1	0	1	0	0	0	copy fasta	IGFBP5	chr2	216667105	216700549
IGFBP5_chr2_216667105_216700549	0/0	a0005	272	1	1	0	0	0	0	copy fasta	IGFBP5	chr2	216667105	216700549
IGFBP6_chr12_53092667_53107340	1/1	a0001	240	413	96	72	185	10	48	copy fasta	IGFBP6	chr12	53092667	53107340
IGFBP6_chr12_53092667_53107340	0/0	a0002	240	2	2	0	0	0	0	copy fasta	IGFBP6	chr12	53092667	53107340
IGFBP6_chr12_53092667_53107340	0/0	a0003	240	1	0	0	1	0	0	copy fasta	IGFBP6	chr12	53092667	53107340
IGFBP7_chr4_57025773_57115385	1/1	a0001	282	333	94	64	132	5	36	copy fasta	IGFBP7	chr4	57025773	57115385
IGFBP7_chr4_57025773_57115385	0/0	a0002	282	13	0	8	0	3	2	copy fasta	IGFBP7	chr4	57025773	57115385
IGFBPL1_chr9_38401528_38429454	1/1	a0001	278	434	83	84	203	12	50	copy fasta	IGFBPL1	chr9	38401528	38429454
IGFBPL1_chr9_38401528_38429454	0/0	a0002	278	6	5	1	0	0	0	copy fasta	IGFBPL1	chr9	38401528	38429454
IGFBPL1_chr9_38401528_38429454	0/0	a0003	276	5	4	1	0	0	0	copy fasta	IGFBPL1	chr9	38401528	38429454
IGFBPL1_chr9_38401528_38429454	0/0	a0004	278	2	2	0	0	0	0	copy fasta	IGFBPL1	chr9	38401528	38429454
IGFBPL1_chr9_38401528_38429454	0/0	a0005	278	1	0	0	1	0	0	copy fasta	IGFBPL1	chr9	38401528	38429454
IGFL1_chr19_46224742_46236243	1/1	a0001	110	417	89	76	197	10	43	copy fasta	IGFL1	chr19	46224742	46236243
IGFL1_chr19_46224742_46236243	0/0	a0002	110	13	6	3	1	0	3	copy fasta	IGFL1	chr19	46224742	46236243
IGFL1_chr19_46224742_46236243	0/0	a0003	110	2	2	0	0	0	0	copy fasta	IGFL1	chr19	46224742	46236243
IGFL1_chr19_46224742_46236243	0/0	a0004	110	1	1	0	0	0	0	copy fasta	IGFL1	chr19	46224742	46236243
IGFL1_chr19_46224742_46236243	0/0	a0005	110	1	0	1	0	0	0	copy fasta	IGFL1	chr19	46224742	46236243
IGFL2_chr19_46143238_46166289	1/1	a0001	119	447	94	66	227	18	40	copy fasta	IGFL2	chr19	46143238	46166289
IGFL2_chr19_46143238_46166289	0/0	a0002	50	2	0	0	0	0	2	copy fasta	IGFL2	chr19	46143238	46166289
IGFL2_chr19_46143238_46166289	0/0	a0003	119	2	2	0	0	0	0	copy fasta	IGFL2	chr19	46143238	46166289
IGFL2_chr19_46143238_46166289	0/0	a0004	119	1	0	0	1	0	0	copy fasta	IGFL2	chr19	46143238	46166289
IGFL3_chr19_46115067_46129688	0/0	a0000	0	32	10	3	14	1	4	copy fasta	IGFL3	chr19	46115067	46129688
IGFL3_chr19_46115067_46129688	1/1	a0001	125	391	70	74	192	13	40	copy fasta	IGFL3	chr19	46115067	46129688
IGFL3_chr19_46115067_46129688	0/0	a0002	125	9	8	1	0	0	0	copy fasta	IGFL3	chr19	46115067	46129688
IGFL4_chr19_46034182_46046002	1/1	a0001	124	383	72	64	189	18	38	copy fasta	IGFL4	chr19	46034182	46046002
IGFL4_chr19_46034182_46046002	0/0	a0002	124	48	3	8	29	0	8	copy fasta	IGFL4	chr19	46034182	46046002
IGFL4_chr19_46034182_46046002	0/0	a0003	124	21	15	6	0	0	0	copy fasta	IGFL4	chr19	46034182	46046002
IGFL4_chr19_46034182_46046002	0/0	a0004	68	1	1	0	0	0	0	copy fasta	IGFL4	chr19	46034182	46046002
IGFL4_chr19_46034182_46046002	0/0	a0005	124	1	1	0	0	0	0	copy fasta	IGFL4	chr19	46034182	46046002
IGFLR1_chr19_35733801_35747452	1/1	a0001	355	328	85	62	132	10	37	copy fasta	IGFLR1	chr19	35733801	35747452
IGFLR1_chr19_35733801_35747452	0/0	a0002	355	42	9	10	13	4	6	copy fasta	IGFLR1	chr19	35733801	35747452