JoGo: Joint Open Genome and Omics Platform

Search Genic Haplotype Catalog

Haplotypefield

Choose the ACTG layer used to define haplotypes.

Genename

e.g. ALDH2, HBB.

Chr

Chromosome number (1-22, X, Y).

GRCh38

1 = haplotype type matches GRCh38; 0 = does not match.

Chm13v2

1 = haplotype type matches CHM13v2; 0 = does not match.

Gpopname

Filter by superpopulation group.

Popname

Filter by population group.

Total

Minimum number of hits (≥).

Start

Start coordinate (GRCh38).

End

End coordinate (GRCh38).

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regionname	grch38/ chm13v2 1/0: The haplotype type is the same as GRCh38 0/1: The haplotype type is the same as CHM13v2 0/0: The haplotype type matches neither GRCh38 nor CHM13v2 1/1: The haplotype type is the same on both GRCh38 and CHM13v2	ahapid	alen	total	AFR	AMR	EAS	EUR	SAS	aseq	genename	chr	start	end
IGLL1_chr22_23568125_23585290	0/0	a0005	213	10	1	2	6	0	1	copy fasta	IGLL1	chr22	23568125	23585290
IGLL1_chr22_23568125_23585290	0/0	a0006	213	10	3	0	7	0	0	copy fasta	IGLL1	chr22	23568125	23585290
IGLL1_chr22_23568125_23585290	0/0	a0007	213	9	4	2	0	1	2	copy fasta	IGLL1	chr22	23568125	23585290
IGLL1_chr22_23568125_23585290	0/0	a0008	213	5	0	0	0	0	5	copy fasta	IGLL1	chr22	23568125	23585290
IGLL1_chr22_23568125_23585290	0/0	a0009	213	5	3	2	0	0	0	copy fasta	IGLL1	chr22	23568125	23585290
IGLL1_chr22_23568125_23585290	0/0	a0010	213	3	3	0	0	0	0	copy fasta	IGLL1	chr22	23568125	23585290
IGLL1_chr22_23568125_23585290	0/0	a0011	213	3	0	0	3	0	0	copy fasta	IGLL1	chr22	23568125	23585290
IGLL1_chr22_23568125_23585290	0/0	a0012	213	2	2	0	0	0	0	copy fasta	IGLL1	chr22	23568125	23585290
IGLL1_chr22_23568125_23585290	0/0	a0013	213	2	0	0	1	1	0	copy fasta	IGLL1	chr22	23568125	23585290
IGLL1_chr22_23568125_23585290	0/0	a0014	213	1	1	0	0	0	0	copy fasta	IGLL1	chr22	23568125	23585290
IGLL1_chr22_23568125_23585290	0/0	a0015	213	1	0	1	0	0	0	copy fasta	IGLL1	chr22	23568125	23585290
IGLL1_chr22_23568125_23585290	0/0	a0016	213	1	1	0	0	0	0	copy fasta	IGLL1	chr22	23568125	23585290
IGLL1_chr22_23568125_23585290	0/0	a0017	213	1	0	0	0	0	1	copy fasta	IGLL1	chr22	23568125	23585290
IGLL1_chr22_23568125_23585290	0/0	a0018	213	1	0	0	1	0	0	copy fasta	IGLL1	chr22	23568125	23585290
IGLL1_chr22_23568125_23585290	0/0	a0019	213	1	0	0	1	0	0	copy fasta	IGLL1	chr22	23568125	23585290
IGLL1_chr22_23568125_23585290	0/0	a0020	213	1	0	1	0	0	0	copy fasta	IGLL1	chr22	23568125	23585290
IGLL1_chr22_23568125_23585290	0/0	a0021	213	1	0	0	1	0	0	copy fasta	IGLL1	chr22	23568125	23585290
IGLL5_chr22_22882816_22901111	1/1	a0001	214	270	47	54	126	8	33	copy fasta	IGLL5	chr22	22882816	22901111
IGLL5_chr22_22882816_22901111	0/0	a0002	214	9	7	1	0	0	1	copy fasta	IGLL5	chr22	22882816	22901111
IGLL5_chr22_22882816_22901111	0/0	a0003	214	7	4	1	0	0	2	copy fasta	IGLL5	chr22	22882816	22901111
IGLL5_chr22_22882816_22901111	0/0	a0004	214	5	5	0	0	0	0	copy fasta	IGLL5	chr22	22882816	22901111
IGLL5_chr22_22882816_22901111	0/0	a0005	214	2	2	0	0	0	0	copy fasta	IGLL5	chr22	22882816	22901111
IGLL5_chr22_22882816_22901111	0/0	a0006	214	1	0	1	0	0	0	copy fasta	IGLL5	chr22	22882816	22901111
IGLL5_chr22_22882816_22901111	0/0	a0007	21	1	1	0	0	0	0	copy fasta	IGLL5	chr22	22882816	22901111
IGLL5_chr22_22882816_22901111	0/0	a0008	214	1	0	0	1	0	0	copy fasta	IGLL5	chr22	22882816	22901111
IGLL5_chr22_22882816_22901111	0/0	a0009	214	1	0	0	1	0	0	copy fasta	IGLL5	chr22	22882816	22901111
IGLL5_chr22_22882816_22901111	0/0	a0010	214	1	0	0	1	0	0	copy fasta	IGLL5	chr22	22882816	22901111
IGLL5_chr22_22882816_22901111	0/0	a0011	214	1	1	0	0	0	0	copy fasta	IGLL5	chr22	22882816	22901111
IGLL5_chr22_22882816_22901111	0/0	a0012	214	1	0	0	1	0	0	copy fasta	IGLL5	chr22	22882816	22901111
IGLL5_chr22_22882816_22901111	0/0	a0013	214	1	1	0	0	0	0	copy fasta	IGLL5	chr22	22882816	22901111
IGLL5_chr22_22882816_22901111	0/0	a0014	214	1	0	1	0	0	0	copy fasta	IGLL5	chr22	22882816	22901111
IGLON5_chr19_51306644_51335891	1/1	a0001	336	408	94	73	177	16	46	copy fasta	IGLON5	chr19	51306644	51335891
IGLON5_chr19_51306644_51335891	0/0	a0002	336	4	0	0	4	0	0	copy fasta	IGLON5	chr19	51306644	51335891
IGLON5_chr19_51306644_51335891	0/0	a0003	336	2	0	0	0	0	2	copy fasta	IGLON5	chr19	51306644	51335891
IGLON5_chr19_51306644_51335891	0/0	a0004	336	1	0	1	0	0	0	copy fasta	IGLON5	chr19	51306644	51335891
IGLON5_chr19_51306644_51335891	0/0	a0005	336	1	0	0	1	0	0	copy fasta	IGLON5	chr19	51306644	51335891
IGLON5_chr19_51306644_51335891	0/0	a0006	336	1	1	0	0	0	0	copy fasta	IGLON5	chr19	51306644	51335891
IGLON5_chr19_51306644_51335891	0/0	a0007	336	1	1	0	0	0	0	copy fasta	IGLON5	chr19	51306644	51335891
IGSF10_chr3_151431203_151466061	0/1	a0001	2623	238	50	40	110	13	24	copy fasta	IGSF10	chr3	151431203	151466061
IGSF10_chr3_151431203_151466061	1/0	a0002	2623	65	1	16	34	3	10	copy fasta	IGSF10	chr3	151431203	151466061
IGSF10_chr3_151431203_151466061	0/0	a0003	2623	31	8	0	22	0	1	copy fasta	IGSF10	chr3	151431203	151466061
IGSF10_chr3_151431203_151466061	0/0	a0004	2623	13	0	4	6	0	3	copy fasta	IGSF10	chr3	151431203	151466061
IGSF10_chr3_151431203_151466061	0/0	a0005	2623	9	0	0	9	0	0	copy fasta	IGSF10	chr3	151431203	151466061
IGSF10_chr3_151431203_151466061	0/0	a0006	2623	8	7	1	0	0	0	copy fasta	IGSF10	chr3	151431203	151466061
IGSF10_chr3_151431203_151466061	0/0	a0007	2623	4	3	0	1	0	0	copy fasta	IGSF10	chr3	151431203	151466061
IGSF10_chr3_151431203_151466061	0/0	a0008	2623	4	4	0	0	0	0	copy fasta	IGSF10	chr3	151431203	151466061
IGSF10_chr3_151431203_151466061	0/0	a0009	2623	4	0	0	0	0	4	copy fasta	IGSF10	chr3	151431203	151466061
IGSF10_chr3_151431203_151466061	0/0	a0010	2623	4	0	4	0	0	0	copy fasta	IGSF10	chr3	151431203	151466061
IGSF10_chr3_151431203_151466061	0/0	a0011	2623	3	0	2	1	0	0	copy fasta	IGSF10	chr3	151431203	151466061
IGSF10_chr3_151431203_151466061	0/0	a0012	2623	3	3	0	0	0	0	copy fasta	IGSF10	chr3	151431203	151466061