JoGo: Joint Open Genome and Omics Platform

Search Genic Haplotype Catalog

Haplotypefield

Choose the ACTG layer used to define haplotypes.

Genename

e.g. ALDH2, HBB.

Chr

Chromosome number (1-22, X, Y).

GRCh38

1 = haplotype type matches GRCh38; 0 = does not match.

Chm13v2

1 = haplotype type matches CHM13v2; 0 = does not match.

Gpopname

Filter by superpopulation group.

Popname

Filter by population group.

Total

Minimum number of hits (≥).

Start

Start coordinate (GRCh38).

End

End coordinate (GRCh38).

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regionname	grch38/ chm13v2 1/0: The haplotype type is the same as GRCh38 0/1: The haplotype type is the same as CHM13v2 0/0: The haplotype type matches neither GRCh38 nor CHM13v2 1/1: The haplotype type is the same on both GRCh38 and CHM13v2	ahapid	alen	total	AFR	AMR	EAS	EUR	SAS	aseq	genename	chr	start	end
INCENP_chr11_62119011_62158169	0/0	a0019	918	1	0	0	1	0	0	copy fasta	INCENP	chr11	62119011	62158169
INCENP_chr11_62119011_62158169	0/0	a0020	918	1	0	0	1	0	0	copy fasta	INCENP	chr11	62119011	62158169
INCENP_chr11_62119011_62158169	0/0	a0021	918	1	0	0	1	0	0	copy fasta	INCENP	chr11	62119011	62158169
INCENP_chr11_62119011_62158169	0/0	a0022	918	1	1	0	0	0	0	copy fasta	INCENP	chr11	62119011	62158169
INCENP_chr11_62119011_62158169	0/0	a0023	918	1	0	1	0	0	0	copy fasta	INCENP	chr11	62119011	62158169
INCENP_chr11_62119011_62158169	0/0	a0024	918	1	0	0	1	0	0	copy fasta	INCENP	chr11	62119011	62158169
INCENP_chr11_62119011_62158169	0/0	a0025	918	1	1	0	0	0	0	copy fasta	INCENP	chr11	62119011	62158169
INCENP_chr11_62119011_62158169	0/0	a0026	918	1	1	0	0	0	0	copy fasta	INCENP	chr11	62119011	62158169
INCENP_chr11_62119011_62158169	0/0	a0027	908	1	1	0	0	0	0	copy fasta	INCENP	chr11	62119011	62158169
INCENP_chr11_62119011_62158169	0/0	a0028	918	1	1	0	0	0	0	copy fasta	INCENP	chr11	62119011	62158169
INCENP_chr11_62119011_62158169	0/0	a0029	923	1	1	0	0	0	0	copy fasta	INCENP	chr11	62119011	62158169
INCENP_chr11_62119011_62158169	0/0	a0030	923	1	1	0	0	0	0	copy fasta	INCENP	chr11	62119011	62158169
INF2_chr14_104684618_104727535	1/1	a0001	1249	282	63	63	116	10	28	copy fasta	INF2	chr14	104684618	104727535
INF2_chr14_104684618_104727535	0/0	a0002	1245	32	5	6	10	3	8	copy fasta	INF2	chr14	104684618	104727535
INF2_chr14_104684618_104727535	0/0	a0003	1247	10	7	1	1	1	0	copy fasta	INF2	chr14	104684618	104727535
INF2_chr14_104684618_104727535	0/0	a0004	1247	7	2	2	1	0	2	copy fasta	INF2	chr14	104684618	104727535
INF2_chr14_104684618_104727535	0/0	a0005	1249	6	0	1	5	0	0	copy fasta	INF2	chr14	104684618	104727535
INF2_chr14_104684618_104727535	0/0	a0006	1249	6	0	1	5	0	0	copy fasta	INF2	chr14	104684618	104727535
INF2_chr14_104684618_104727535	0/0	a0007	1247	4	4	0	0	0	0	copy fasta	INF2	chr14	104684618	104727535
INF2_chr14_104684618_104727535	0/0	a0008	1249	4	1	3	0	0	0	copy fasta	INF2	chr14	104684618	104727535
INF2_chr14_104684618_104727535	0/0	a0009	1249	4	3	1	0	0	0	copy fasta	INF2	chr14	104684618	104727535
INF2_chr14_104684618_104727535	0/0	a0010	1249	4	0	0	4	0	0	copy fasta	INF2	chr14	104684618	104727535
INF2_chr14_104684618_104727535	0/0	a0011	1249	3	3	0	0	0	0	copy fasta	INF2	chr14	104684618	104727535
INF2_chr14_104684618_104727535	0/0	a0012	1249	2	0	0	2	0	0	copy fasta	INF2	chr14	104684618	104727535
INF2_chr14_104684618_104727535	0/0	a0013	1249	2	0	1	0	1	0	copy fasta	INF2	chr14	104684618	104727535
INF2_chr14_104684618_104727535	0/0	a0014	552	1	0	0	1	0	0	copy fasta	INF2	chr14	104684618	104727535
INF2_chr14_104684618_104727535	0/0	a0015	1245	1	0	0	0	0	1	copy fasta	INF2	chr14	104684618	104727535
INF2_chr14_104684618_104727535	0/0	a0016	1247	1	0	1	0	0	0	copy fasta	INF2	chr14	104684618	104727535
INF2_chr14_104684618_104727535	0/0	a0017	1247	1	1	0	0	0	0	copy fasta	INF2	chr14	104684618	104727535
INF2_chr14_104684618_104727535	0/0	a0018	1249	1	0	1	0	0	0	copy fasta	INF2	chr14	104684618	104727535
INF2_chr14_104684618_104727535	0/0	a0019	1249	1	0	1	0	0	0	copy fasta	INF2	chr14	104684618	104727535
INF2_chr14_104684618_104727535	0/0	a0020	1209	1	0	0	1	0	0	copy fasta	INF2	chr14	104684618	104727535
INF2_chr14_104684618_104727535	0/0	a0021	1249	1	0	0	1	0	0	copy fasta	INF2	chr14	104684618	104727535
INF2_chr14_104684618_104727535	0/0	a0022	1249	1	1	0	0	0	0	copy fasta	INF2	chr14	104684618	104727535
INF2_chr14_104684618_104727535	0/0	a0023	1249	1	0	0	1	0	0	copy fasta	INF2	chr14	104684618	104727535
INF2_chr14_104684618_104727535	0/0	a0024	1249	1	0	0	0	0	1	copy fasta	INF2	chr14	104684618	104727535
INF2_chr14_104684618_104727535	0/0	a0025	1245	1	0	0	0	1	0	copy fasta	INF2	chr14	104684618	104727535
INF2_chr14_104684618_104727535	0/0	a0026	1249	1	0	0	1	0	0	copy fasta	INF2	chr14	104684618	104727535
INF2_chr14_104684618_104727535	0/0	a0027	1249	1	0	0	1	0	0	copy fasta	INF2	chr14	104684618	104727535
ING1_chr13_110708700_110728339	1/1	a0001	279	437	92	76	207	18	42	copy fasta	ING1	chr13	110708700	110728339
ING1_chr13_110708700_110728339	0/0	a0002	279	1	0	0	1	0	0	copy fasta	ING1	chr13	110708700	110728339
ING2_chr4_183500058_183517429	1/1	a0001	280	455	96	84	221	14	38	copy fasta	ING2	chr4	183500058	183517429
ING2_chr4_183500058_183517429	0/0	a0002	280	1	0	0	1	0	0	copy fasta	ING2	chr4	183500058	183517429
ING3_chr7_120945777_120982216	0/0	a0001	418	330	94	62	134	8	32	copy fasta	ING3	chr7	120945777	120982216
ING3_chr7_120945777_120982216	0/0	a0002	422	1	0	0	1	0	0	copy fasta	ING3	chr7	120945777	120982216
ING3_chr7_120945777_120982216	0/0	a0003	418	1	0	0	1	0	0	copy fasta	ING3	chr7	120945777	120982216
ING4_chr12_6645301_6668119	1/1	a0001	248	404	86	79	185	12	40	copy fasta	ING4	chr12	6645301	6668119
ING4_chr12_6645301_6668119	0/0	a0002	248	1	0	1	0	0	0	copy fasta	ING4	chr12	6645301	6668119
ING4_chr12_6645301_6668119	0/0	a0003	248	1	0	0	1	0	0	copy fasta	ING4	chr12	6645301	6668119
ING5_chr2_241697039_241734478	1/1	a0001	240	393	96	64	175	14	42	copy fasta	ING5	chr2	241697039	241734478