JoGo: Joint Open Genome and Omics Platform

Search Genic Haplotype Catalog

Haplotypefield

Choose the ACTG layer used to define haplotypes.

Genename

e.g. ALDH2, HBB.

Chr

Chromosome number (1-22, X, Y).

GRCh38

1 = haplotype type matches GRCh38; 0 = does not match.

Chm13v2

1 = haplotype type matches CHM13v2; 0 = does not match.

Gpopname

Filter by superpopulation group.

Popname

Filter by population group.

Total

Minimum number of hits (≥).

Start

Start coordinate (GRCh38).

End

End coordinate (GRCh38).

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regionname	grch38/ chm13v2 1/0: The haplotype type is the same as GRCh38 0/1: The haplotype type is the same as CHM13v2 0/0: The haplotype type matches neither GRCh38 nor CHM13v2 1/1: The haplotype type is the same on both GRCh38 and CHM13v2	ahapid	alen	total	AFR	AMR	EAS	EUR	SAS	aseq	genename	chr	start	end
IQCN_chr19_18252098_18279452	0/0	a0033	1367	1	1	0	0	0	0	copy fasta	IQCN	chr19	18252098	18279452
IQCN_chr19_18252098_18279452	0/0	a0034	1367	1	0	1	0	0	0	copy fasta	IQCN	chr19	18252098	18279452
IQCN_chr19_18252098_18279452	0/0	a0035	1367	1	1	0	0	0	0	copy fasta	IQCN	chr19	18252098	18279452
IQCN_chr19_18252098_18279452	0/0	a0036	1367	1	1	0	0	0	0	copy fasta	IQCN	chr19	18252098	18279452
IQCN_chr19_18252098_18279452	0/0	a0037	1367	1	0	0	1	0	0	copy fasta	IQCN	chr19	18252098	18279452
IQCN_chr19_18252098_18279452	0/0	a0038	1367	1	0	1	0	0	0	copy fasta	IQCN	chr19	18252098	18279452
IQCN_chr19_18252098_18279452	0/0	a0039	1367	1	1	0	0	0	0	copy fasta	IQCN	chr19	18252098	18279452
IQCN_chr19_18252098_18279452	0/0	a0040	1367	1	0	0	1	0	0	copy fasta	IQCN	chr19	18252098	18279452
IQCN_chr19_18252098_18279452	0/0	a0041	1367	1	0	0	1	0	0	copy fasta	IQCN	chr19	18252098	18279452
IQGAP1_chr15_90383242_90507239	1/1	a0001	1657	351	86	51	164	14	34	copy fasta	IQGAP1	chr15	90383242	90507239
IQGAP1_chr15_90383242_90507239	0/0	a0002	1657	2	0	0	2	0	0	copy fasta	IQGAP1	chr15	90383242	90507239
IQGAP1_chr15_90383242_90507239	0/0	a0003	1657	1	0	0	1	0	0	copy fasta	IQGAP1	chr15	90383242	90507239
IQGAP1_chr15_90383242_90507239	0/0	a0004	1657	1	1	0	0	0	0	copy fasta	IQGAP1	chr15	90383242	90507239
IQGAP1_chr15_90383242_90507239	0/0	a0005	1657	1	0	0	1	0	0	copy fasta	IQGAP1	chr15	90383242	90507239
IQGAP1_chr15_90383242_90507239	0/0	a0006	1657	1	1	0	0	0	0	copy fasta	IQGAP1	chr15	90383242	90507239
IQGAP1_chr15_90383242_90507239	0/0	a0007	1657	1	0	0	1	0	0	copy fasta	IQGAP1	chr15	90383242	90507239
IQGAP1_chr15_90383242_90507239	0/0	a0008	1657	1	0	1	0	0	0	copy fasta	IQGAP1	chr15	90383242	90507239
IQGAP1_chr15_90383242_90507239	0/0	a0009	1657	1	0	0	1	0	0	copy fasta	IQGAP1	chr15	90383242	90507239
IQGAP2_chr5_76398285_76713132	0/0	a0001	1575	61	20	14	15	1	11	copy fasta	IQGAP2	chr5	76398285	76713132
IQGAP2_chr5_76398285_76713132	0/0	a0002	1575	57	21	6	19	1	10	copy fasta	IQGAP2	chr5	76398285	76713132
IQGAP2_chr5_76398285_76713132	0/0	a0003	1575	24	9	2	11	0	2	copy fasta	IQGAP2	chr5	76398285	76713132
IQGAP2_chr5_76398285_76713132	0/0	a0004	1575	20	2	6	9	1	2	copy fasta	IQGAP2	chr5	76398285	76713132
IQGAP2_chr5_76398285_76713132	0/0	a0005	1575	6	0	0	6	0	0	copy fasta	IQGAP2	chr5	76398285	76713132
IQGAP2_chr5_76398285_76713132	0/0	a0006	1575	6	4	2	0	0	0	copy fasta	IQGAP2	chr5	76398285	76713132
IQGAP2_chr5_76398285_76713132	0/0	a0007	1575	5	0	1	3	0	1	copy fasta	IQGAP2	chr5	76398285	76713132
IQGAP2_chr5_76398285_76713132	0/0	a0008	1575	4	0	0	4	0	0	copy fasta	IQGAP2	chr5	76398285	76713132
IQGAP2_chr5_76398285_76713132	0/0	a0009	1575	4	4	0	0	0	0	copy fasta	IQGAP2	chr5	76398285	76713132
IQGAP2_chr5_76398285_76713132	0/1	a0010	1575	3	0	1	1	0	0	copy fasta	IQGAP2	chr5	76398285	76713132
IQGAP2_chr5_76398285_76713132	0/0	a0011	1575	3	0	0	3	0	0	copy fasta	IQGAP2	chr5	76398285	76713132
IQGAP2_chr5_76398285_76713132	0/0	a0012	1575	3	0	2	0	1	0	copy fasta	IQGAP2	chr5	76398285	76713132
IQGAP2_chr5_76398285_76713132	0/0	a0013	1575	3	1	1	0	0	1	copy fasta	IQGAP2	chr5	76398285	76713132
IQGAP2_chr5_76398285_76713132	0/0	a0014	1575	2	0	0	2	0	0	copy fasta	IQGAP2	chr5	76398285	76713132
IQGAP2_chr5_76398285_76713132	0/0	a0015	1575	2	0	2	0	0	0	copy fasta	IQGAP2	chr5	76398285	76713132
IQGAP2_chr5_76398285_76713132	0/0	a0016	1575	2	0	0	2	0	0	copy fasta	IQGAP2	chr5	76398285	76713132
IQGAP2_chr5_76398285_76713132	0/0	a0017	1575	2	2	0	0	0	0	copy fasta	IQGAP2	chr5	76398285	76713132
IQGAP2_chr5_76398285_76713132	0/0	a0018	1575	2	0	1	1	0	0	copy fasta	IQGAP2	chr5	76398285	76713132
IQGAP2_chr5_76398285_76713132	0/0	a0019	1575	2	0	2	0	0	0	copy fasta	IQGAP2	chr5	76398285	76713132
IQGAP2_chr5_76398285_76713132	0/0	a0020	1575	1	0	0	1	0	0	copy fasta	IQGAP2	chr5	76398285	76713132
IQGAP2_chr5_76398285_76713132	0/0	a0021	1575	1	0	0	0	0	1	copy fasta	IQGAP2	chr5	76398285	76713132
IQGAP2_chr5_76398285_76713132	0/0	a0022	1575	1	0	0	1	0	0	copy fasta	IQGAP2	chr5	76398285	76713132
IQGAP2_chr5_76398285_76713132	0/0	a0023	1575	1	0	0	1	0	0	copy fasta	IQGAP2	chr5	76398285	76713132
IQGAP2_chr5_76398285_76713132	0/0	a0024	1575	1	1	0	0	0	0	copy fasta	IQGAP2	chr5	76398285	76713132
IQGAP2_chr5_76398285_76713132	0/0	a0025	1575	1	1	0	0	0	0	copy fasta	IQGAP2	chr5	76398285	76713132
IQGAP2_chr5_76398285_76713132	1/0	a0026	1575	1	0	0	0	0	0	copy fasta	IQGAP2	chr5	76398285	76713132
IQGAP2_chr5_76398285_76713132	0/0	a0027	1575	1	0	0	1	0	0	copy fasta	IQGAP2	chr5	76398285	76713132
IQGAP2_chr5_76398285_76713132	0/0	a0028	1575	1	1	0	0	0	0	copy fasta	IQGAP2	chr5	76398285	76713132
IQGAP2_chr5_76398285_76713132	0/0	a0029	1575	1	1	0	0	0	0	copy fasta	IQGAP2	chr5	76398285	76713132
IQGAP2_chr5_76398285_76713132	0/0	a0030	1575	1	1	0	0	0	0	copy fasta	IQGAP2	chr5	76398285	76713132
IQGAP3_chr1_156520405_156577565	0/0	a0001	1631	116	14	23	63	4	12	copy fasta	IQGAP3	chr1	156520405	156577565
IQGAP3_chr1_156520405_156577565	0/1	a0002	1631	107	16	22	58	4	6	copy fasta	IQGAP3	chr1	156520405	156577565