JoGo: Joint Open Genome and Omics Platform

Search Genic Haplotype Catalog

Haplotypefield

Choose the ACTG layer used to define haplotypes.

Genename

e.g. ALDH2, HBB.

Chr

Chromosome number (1-22, X, Y).

GRCh38

1 = haplotype type matches GRCh38; 0 = does not match.

Chm13v2

1 = haplotype type matches CHM13v2; 0 = does not match.

Gpopname

Filter by superpopulation group.

Popname

Filter by population group.

Total

Minimum number of hits (≥).

Start

Start coordinate (GRCh38).

End

End coordinate (GRCh38).

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regionname	grch38/ chm13v2 1/0: The haplotype type is the same as GRCh38 0/1: The haplotype type is the same as CHM13v2 0/0: The haplotype type matches neither GRCh38 nor CHM13v2 1/1: The haplotype type is the same on both GRCh38 and CHM13v2	ahapid	alen	total	AFR	AMR	EAS	EUR	SAS	aseq	genename	chr	start	end
IRX6_chr16_55319203_55335756	0/0	a0016	446	1	0	1	0	0	0	copy fasta	IRX6	chr16	55319203	55335756
ISCA1_chr9_86259546_86287538	1/1	a0001	129	409	91	70	186	18	42	copy fasta	ISCA1	chr9	86259546	86287538
ISCA1_chr9_86259546_86287538	0/0	a0002	129	1	1	0	0	0	0	copy fasta	ISCA1	chr9	86259546	86287538
ISCA2_chr14_74488765_74502106	1/1	a0001	154	430	96	77	197	18	40	copy fasta	ISCA2	chr14	74488765	74502106
ISCA2_chr14_74488765_74502106	0/0	a0002	154	1	0	1	0	0	0	copy fasta	ISCA2	chr14	74488765	74502106
ISCA2_chr14_74488765_74502106	0/0	a0003	154	1	0	0	1	0	0	copy fasta	ISCA2	chr14	74488765	74502106
ISCU_chr12_108557596_108574368	0/1	a0001	167	210	26	29	115	8	31	copy fasta	ISCU	chr12	108557596	108574368
ISCU_chr12_108557596_108574368	0/0	a0002	167	186	55	32	82	3	14	copy fasta	ISCU	chr12	108557596	108574368
ISCU_chr12_108557596_108574368	1/0	a0003	167	46	15	9	17	2	2	copy fasta	ISCU	chr12	108557596	108574368
ISCU_chr12_108557596_108574368	0/0	a0004	167	2	0	0	0	1	1	copy fasta	ISCU	chr12	108557596	108574368
ISCU_chr12_108557596_108574368	0/0	a0005	167	1	1	0	0	0	0	copy fasta	ISCU	chr12	108557596	108574368
ISCU_chr12_108557596_108574368	0/0	a0006	167	1	1	0	0	0	0	copy fasta	ISCU	chr12	108557596	108574368
ISG15_chr1_1008497_1019540	1/1	a0001	165	261	55	48	122	7	27	copy fasta	ISG15	chr1	1008497	1019540
ISG15_chr1_1008497_1019540	0/0	a0002	165	119	39	22	28	11	19	copy fasta	ISG15	chr1	1008497	1019540
ISG15_chr1_1008497_1019540	0/0	a0003	165	2	2	0	0	0	0	copy fasta	ISG15	chr1	1008497	1019540
ISG20L2_chr1_156716895_156733766	1/1	a0001	353	333	77	54	138	18	44	copy fasta	ISG20L2	chr1	156716895	156733766
ISG20L2_chr1_156716895_156733766	0/0	a0002	353	70	16	26	22	0	6	copy fasta	ISG20L2	chr1	156716895	156733766
ISG20L2_chr1_156716895_156733766	0/0	a0003	353	1	1	0	0	0	0	copy fasta	ISG20L2	chr1	156716895	156733766
ISG20_chr15_88634016_88661483	1/1	a0001	181	433	95	74	203	16	43	copy fasta	ISG20	chr15	88634016	88661483
ISG20_chr15_88634016_88661483	0/0	a0002	181	1	1	0	0	0	0	copy fasta	ISG20	chr15	88634016	88661483
ISG20_chr15_88634016_88661483	0/0	a0003	181	1	0	0	0	0	1	copy fasta	ISG20	chr15	88634016	88661483
ISG20_chr15_88634016_88661483	0/0	a0004	181	1	0	0	1	0	0	copy fasta	ISG20	chr15	88634016	88661483
ISL1_chr5_51378448_51399730	1/1	a0001	349	341	87	64	144	14	30	copy fasta	ISL1	chr5	51378448	51399730
ISL1_chr5_51378448_51399730	0/0	a0002	349	1	1	0	0	0	0	copy fasta	ISL1	chr5	51378448	51399730
ISL2_chr15_76331773_76347475	1/1	a0001	359	414	100	79	179	12	42	copy fasta	ISL2	chr15	76331773	76347475
ISL2_chr15_76331773_76347475	0/0	a0002	359	1	0	0	1	0	0	copy fasta	ISL2	chr15	76331773	76347475
ISL2_chr15_76331773_76347475	0/0	a0003	359	1	0	1	0	0	0	copy fasta	ISL2	chr15	76331773	76347475
ISLR2_chr15_74125586_74141802	1/1	a0001	745	378	86	61	173	10	46	copy fasta	ISLR2	chr15	74125586	74141802
ISLR2_chr15_74125586_74141802	0/0	a0002	745	19	8	2	9	0	0	copy fasta	ISLR2	chr15	74125586	74141802
ISLR2_chr15_74125586_74141802	0/0	a0003	745	1	0	1	0	0	0	copy fasta	ISLR2	chr15	74125586	74141802
ISLR_chr15_74168710_74181871	1/1	a0001	428	428	92	78	194	18	44	copy fasta	ISLR	chr15	74168710	74181871
ISLR_chr15_74168710_74181871	0/0	a0002	428	5	0	0	5	0	0	copy fasta	ISLR	chr15	74168710	74181871
ISLR_chr15_74168710_74181871	0/0	a0003	428	1	0	0	1	0	0	copy fasta	ISLR	chr15	74168710	74181871
ISM1_chr20_13216274_13305651	1/1	a0001	464	366	87	62	169	13	33	copy fasta	ISM1	chr20	13216274	13305651
ISM1_chr20_13216274_13305651	0/0	a0002	464	15	1	7	7	0	0	copy fasta	ISM1	chr20	13216274	13305651
ISM1_chr20_13216274_13305651	0/0	a0003	464	7	0	0	7	0	0	copy fasta	ISM1	chr20	13216274	13305651
ISM1_chr20_13216274_13305651	0/0	a0004	464	3	0	3	0	0	0	copy fasta	ISM1	chr20	13216274	13305651
ISM1_chr20_13216274_13305651	0/0	a0005	464	1	1	0	0	0	0	copy fasta	ISM1	chr20	13216274	13305651
ISM1_chr20_13216274_13305651	0/0	a0006	464	1	0	0	0	1	0	copy fasta	ISM1	chr20	13216274	13305651
ISM1_chr20_13216274_13305651	0/0	a0007	464	1	0	0	0	0	1	copy fasta	ISM1	chr20	13216274	13305651
ISM1_chr20_13216274_13305651	0/0	a0008	464	1	1	0	0	0	0	copy fasta	ISM1	chr20	13216274	13305651
ISM1_chr20_13216274_13305651	0/0	a0009	464	1	0	0	1	0	0	copy fasta	ISM1	chr20	13216274	13305651
ISM2_chr14_77469394_77503816	0/1	a0001	571	137	15	37	57	7	20	copy fasta	ISM2	chr14	77469394	77503816
ISM2_chr14_77469394_77503816	1/0	a0002	571	120	63	24	8	6	18	copy fasta	ISM2	chr14	77469394	77503816
ISM2_chr14_77469394_77503816	0/0	a0003	571	8	8	0	0	0	0	copy fasta	ISM2	chr14	77469394	77503816
ISM2_chr14_77469394_77503816	0/0	a0004	571	3	0	3	0	0	0	copy fasta	ISM2	chr14	77469394	77503816
ISM2_chr14_77469394_77503816	0/0	a0005	571	2	2	0	0	0	0	copy fasta	ISM2	chr14	77469394	77503816
ISM2_chr14_77469394_77503816	0/0	a0006	571	2	2	0	0	0	0	copy fasta	ISM2	chr14	77469394	77503816
ISM2_chr14_77469394_77503816	0/0	a0007	571	2	0	0	0	0	2	copy fasta	ISM2	chr14	77469394	77503816
ISM2_chr14_77469394_77503816	0/0	a0008	571	1	0	1	0	0	0	copy fasta	ISM2	chr14	77469394	77503816