JoGo: Joint Open Genome and Omics Platform

Search Genic Haplotype Catalog

Haplotypefield

Choose the ACTG layer used to define haplotypes.

Genename

e.g. ALDH2, HBB.

Chr

Chromosome number (1-22, X, Y).

GRCh38

1 = haplotype type matches GRCh38; 0 = does not match.

Chm13v2

1 = haplotype type matches CHM13v2; 0 = does not match.

Gpopname

Filter by superpopulation group.

Popname

Filter by population group.

Total

Minimum number of hits (≥).

Start

Start coordinate (GRCh38).

End

End coordinate (GRCh38).

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regionname	grch38/ chm13v2 1/0: The haplotype type is the same as GRCh38 0/1: The haplotype type is the same as CHM13v2 0/0: The haplotype type matches neither GRCh38 nor CHM13v2 1/1: The haplotype type is the same on both GRCh38 and CHM13v2	ahapid	alen	total	AFR	AMR	EAS	EUR	SAS	aseq	genename	chr	start	end
ISM2_chr14_77469394_77503816	0/0	a0009	571	1	1	0	0	0	0	copy fasta	ISM2	chr14	77469394	77503816
ISM2_chr14_77469394_77503816	0/0	a0010	571	1	0	1	0	0	0	copy fasta	ISM2	chr14	77469394	77503816
ISM2_chr14_77469394_77503816	0/0	a0011	571	1	1	0	0	0	0	copy fasta	ISM2	chr14	77469394	77503816
ISM2_chr14_77469394_77503816	0/0	a0012	571	1	0	0	1	0	0	copy fasta	ISM2	chr14	77469394	77503816
ISM2_chr14_77469394_77503816	0/0	a0013	571	1	0	0	0	1	0	copy fasta	ISM2	chr14	77469394	77503816
ISOC1_chr5_129089749_129119028	1/1	a0001	298	414	96	74	186	18	38	copy fasta	ISOC1	chr5	129089749	129119028
ISOC1_chr5_129089749_129119028	0/0	a0002	298	1	0	0	1	0	0	copy fasta	ISOC1	chr5	129089749	129119028
ISOC1_chr5_129089749_129119028	0/0	a0003	298	1	1	0	0	0	0	copy fasta	ISOC1	chr5	129089749	129119028
ISOC1_chr5_129089749_129119028	0/0	a0004	298	1	1	0	0	0	0	copy fasta	ISOC1	chr5	129089749	129119028
ISOC1_chr5_129089749_129119028	0/0	a0005	298	1	0	0	1	0	0	copy fasta	ISOC1	chr5	129089749	129119028
ISOC2_chr19_55447985_55466642	1/1	a0001	205	373	92	76	140	18	45	copy fasta	ISOC2	chr19	55447985	55466642
ISOC2_chr19_55447985_55466642	0/0	a0002	205	2	0	0	2	0	0	copy fasta	ISOC2	chr19	55447985	55466642
ISOC2_chr19_55447985_55466642	0/0	a0003	205	1	1	0	0	0	0	copy fasta	ISOC2	chr19	55447985	55466642
ISOC2_chr19_55447985_55466642	0/0	a0004	205	1	0	0	1	0	0	copy fasta	ISOC2	chr19	55447985	55466642
ISOC2_chr19_55447985_55466642	0/0	a0005	205	1	0	0	0	0	1	copy fasta	ISOC2	chr19	55447985	55466642
ISOC2_chr19_55447985_55466642	0/0	a0006	205	1	1	0	0	0	0	copy fasta	ISOC2	chr19	55447985	55466642
ISOC2_chr19_55447985_55466642	0/0	a0007	205	1	0	0	1	0	0	copy fasta	ISOC2	chr19	55447985	55466642
IST1_chr16_71890531_71936199	1/0	a0001	366	218	58	53	77	11	18	copy fasta	IST1	chr16	71890531	71936199
IST1_chr16_71890531_71936199	0/1	a0002	364	119	18	19	55	5	21	copy fasta	IST1	chr16	71890531	71936199
IST1_chr16_71890531_71936199	0/0	a0003	368	12	12	0	0	0	0	copy fasta	IST1	chr16	71890531	71936199
IST1_chr16_71890531_71936199	0/0	a0004	364	2	0	0	0	0	2	copy fasta	IST1	chr16	71890531	71936199
IST1_chr16_71890531_71936199	0/0	a0005	366	1	0	0	0	0	1	copy fasta	IST1	chr16	71890531	71936199
ISX_chr22_35061158_35092387	0/0	a0001	245	257	46	40	139	5	27	copy fasta	ISX	chr22	35061158	35092387
ISX_chr22_35061158_35092387	1/1	a0002	245	76	6	20	42	5	1	copy fasta	ISX	chr22	35061158	35092387
ISX_chr22_35061158_35092387	0/0	a0003	245	31	16	1	13	0	1	copy fasta	ISX	chr22	35061158	35092387
ISX_chr22_35061158_35092387	0/0	a0004	245	18	10	2	0	1	5	copy fasta	ISX	chr22	35061158	35092387
ISX_chr22_35061158_35092387	0/0	a0005	245	9	1	4	0	1	3	copy fasta	ISX	chr22	35061158	35092387
ISX_chr22_35061158_35092387	0/0	a0006	245	7	1	2	1	0	3	copy fasta	ISX	chr22	35061158	35092387
ISX_chr22_35061158_35092387	0/0	a0007	245	5	1	2	0	2	0	copy fasta	ISX	chr22	35061158	35092387
ISX_chr22_35061158_35092387	0/0	a0008	245	4	3	1	0	0	0	copy fasta	ISX	chr22	35061158	35092387
ISX_chr22_35061158_35092387	0/0	a0009	245	1	1	0	0	0	0	copy fasta	ISX	chr22	35061158	35092387
ISX_chr22_35061158_35092387	0/0	a0010	245	1	1	0	0	0	0	copy fasta	ISX	chr22	35061158	35092387
ISX_chr22_35061158_35092387	0/0	a0011	245	1	0	0	1	0	0	copy fasta	ISX	chr22	35061158	35092387
ISY1_chr3_129122415_129166063	1/1	a0001	285	366	84	70	148	14	48	copy fasta	ISY1	chr3	129122415	129166063
ISYNA1_chr19_18429388_18443133	1/1	a0001	558	297	96	69	84	14	32	copy fasta	ISYNA1	chr19	18429388	18443133
ISYNA1_chr19_18429388_18443133	0/0	a0002	558	3	3	0	0	0	0	copy fasta	ISYNA1	chr19	18429388	18443133
ISYNA1_chr19_18429388_18443133	0/0	a0003	558	3	0	0	3	0	0	copy fasta	ISYNA1	chr19	18429388	18443133
ISYNA1_chr19_18429388_18443133	0/0	a0004	558	3	0	3	0	0	0	copy fasta	ISYNA1	chr19	18429388	18443133
ISYNA1_chr19_18429388_18443133	0/0	a0005	219	1	0	0	1	0	0	copy fasta	ISYNA1	chr19	18429388	18443133
ISYNA1_chr19_18429388_18443133	0/0	a0006	558	1	1	0	0	0	0	copy fasta	ISYNA1	chr19	18429388	18443133
ITCH_chr20_34358273_34516773	1/1	a0001	862	291	73	40	136	10	30	copy fasta	ITCH	chr20	34358273	34516773
ITCH_chr20_34358273_34516773	0/0	a0002	862	1	0	0	1	0	0	copy fasta	ITCH	chr20	34358273	34516773
ITCH_chr20_34358273_34516773	0/0	a0003	862	1	1	0	0	0	0	copy fasta	ITCH	chr20	34358273	34516773
ITCH_chr20_34358273_34516773	0/0	a0004	862	1	0	0	1	0	0	copy fasta	ITCH	chr20	34358273	34516773
ITFG1_chr16_47149391_47466063	1/1	a0001	612	110	70	20	4	4	10	copy fasta	ITFG1	chr16	47149391	47466063
ITFG2_chr12_2807668_2830076	1/1	a0001	447	399	94	64	185	12	42	copy fasta	ITFG2	chr12	2807668	2830076
ITFG2_chr12_2807668_2830076	0/0	a0002	447	1	0	0	1	0	0	copy fasta	ITFG2	chr12	2807668	2830076
ITFG2_chr12_2807668_2830076	0/0	a0003	447	1	0	0	1	0	0	copy fasta	ITFG2	chr12	2807668	2830076
ITFG2_chr12_2807668_2830076	0/0	a0004	447	1	0	0	1	0	0	copy fasta	ITFG2	chr12	2807668	2830076
ITGA10_chr1_145886208_145915050	1/0	a0001	1167	304	53	66	143	10	31	copy fasta	ITGA10	chr1	145886208	145915050