JoGo: Joint Open Genome and Omics Platform

Search Genic Haplotype Catalog

Haplotypefield

Choose the ACTG layer used to define haplotypes.

Genename

e.g. ALDH2, HBB.

Chr

Chromosome number (1-22, X, Y).

GRCh38

1 = haplotype type matches GRCh38; 0 = does not match.

Chm13v2

1 = haplotype type matches CHM13v2; 0 = does not match.

Gpopname

Filter by superpopulation group.

Popname

Filter by population group.

Total

Minimum number of hits (≥).

Start

Start coordinate (GRCh38).

End

End coordinate (GRCh38).

Sort By

Choose a field to sort by.

Order by

Ascending / Descending.

Show

Results per page.

regionname	grch38/ chm13v2 1/0: The haplotype type is the same as GRCh38 0/1: The haplotype type is the same as CHM13v2 0/0: The haplotype type matches neither GRCh38 nor CHM13v2 1/1: The haplotype type is the same on both GRCh38 and CHM13v2	ahapid	alen	total	AFR	AMR	EAS	EUR	SAS	aseq	genename	chr	start	end
ITGA10_chr1_145886208_145915050	0/1	a0002	1167	46	10	11	17	0	7	copy fasta	ITGA10	chr1	145886208	145915050
ITGA10_chr1_145886208_145915050	0/0	a0003	1167	7	7	0	0	0	0	copy fasta	ITGA10	chr1	145886208	145915050
ITGA10_chr1_145886208_145915050	0/0	a0004	1167	5	0	0	5	0	0	copy fasta	ITGA10	chr1	145886208	145915050
ITGA10_chr1_145886208_145915050	0/0	a0005	1167	5	5	0	0	0	0	copy fasta	ITGA10	chr1	145886208	145915050
ITGA10_chr1_145886208_145915050	0/0	a0006	1167	4	0	0	3	0	1	copy fasta	ITGA10	chr1	145886208	145915050
ITGA10_chr1_145886208_145915050	0/0	a0007	1167	3	3	0	0	0	0	copy fasta	ITGA10	chr1	145886208	145915050
ITGA10_chr1_145886208_145915050	0/0	a0008	1167	2	2	0	0	0	0	copy fasta	ITGA10	chr1	145886208	145915050
ITGA10_chr1_145886208_145915050	0/0	a0009	1167	2	2	0	0	0	0	copy fasta	ITGA10	chr1	145886208	145915050
ITGA10_chr1_145886208_145915050	0/0	a0010	1167	2	2	0	0	0	0	copy fasta	ITGA10	chr1	145886208	145915050
ITGA10_chr1_145886208_145915050	0/0	a0011	1167	2	2	0	0	0	0	copy fasta	ITGA10	chr1	145886208	145915050
ITGA10_chr1_145886208_145915050	0/0	a0012	1167	1	1	0	0	0	0	copy fasta	ITGA10	chr1	145886208	145915050
ITGA10_chr1_145886208_145915050	0/0	a0013	1167	1	0	0	1	0	0	copy fasta	ITGA10	chr1	145886208	145915050
ITGA10_chr1_145886208_145915050	0/0	a0014	1167	1	0	1	0	0	0	copy fasta	ITGA10	chr1	145886208	145915050
ITGA10_chr1_145886208_145915050	0/0	a0015	1167	1	0	0	1	0	0	copy fasta	ITGA10	chr1	145886208	145915050
ITGA10_chr1_145886208_145915050	0/0	a0016	1167	1	0	0	1	0	0	copy fasta	ITGA10	chr1	145886208	145915050
ITGA10_chr1_145886208_145915050	0/0	a0017	1167	1	0	0	0	0	1	copy fasta	ITGA10	chr1	145886208	145915050
ITGA10_chr1_145886208_145915050	0/0	a0018	1167	1	0	0	1	0	0	copy fasta	ITGA10	chr1	145886208	145915050
ITGA10_chr1_145886208_145915050	0/0	a0019	1167	1	1	0	0	0	0	copy fasta	ITGA10	chr1	145886208	145915050
ITGA11_chr15_68291532_68437163	0/0	a0001	1188	103	22	25	33	3	20	copy fasta	ITGA11	chr15	68291532	68437163
ITGA11_chr15_68291532_68437163	0/0	a0002	1188	33	10	9	4	4	6	copy fasta	ITGA11	chr15	68291532	68437163
ITGA11_chr15_68291532_68437163	0/0	a0003	1188	30	8	4	16	0	2	copy fasta	ITGA11	chr15	68291532	68437163
ITGA11_chr15_68291532_68437163	0/0	a0004	1188	19	15	2	2	0	0	copy fasta	ITGA11	chr15	68291532	68437163
ITGA11_chr15_68291532_68437163	0/0	a0005	1188	11	3	2	5	0	1	copy fasta	ITGA11	chr15	68291532	68437163
ITGA11_chr15_68291532_68437163	0/0	a0006	1188	9	4	1	1	2	1	copy fasta	ITGA11	chr15	68291532	68437163
ITGA11_chr15_68291532_68437163	0/0	a0007	1188	8	1	0	7	0	0	copy fasta	ITGA11	chr15	68291532	68437163
ITGA11_chr15_68291532_68437163	0/0	a0008	1188	5	5	0	0	0	0	copy fasta	ITGA11	chr15	68291532	68437163
ITGA11_chr15_68291532_68437163	0/0	a0009	1188	4	0	3	0	1	0	copy fasta	ITGA11	chr15	68291532	68437163
ITGA11_chr15_68291532_68437163	0/0	a0010	1188	4	2	1	0	0	1	copy fasta	ITGA11	chr15	68291532	68437163
ITGA11_chr15_68291532_68437163	0/0	a0011	1188	2	0	0	2	0	0	copy fasta	ITGA11	chr15	68291532	68437163
ITGA11_chr15_68291532_68437163	0/0	a0012	1188	2	2	0	0	0	0	copy fasta	ITGA11	chr15	68291532	68437163
ITGA11_chr15_68291532_68437163	0/0	a0013	1188	2	2	0	0	0	0	copy fasta	ITGA11	chr15	68291532	68437163
ITGA11_chr15_68291532_68437163	0/0	a0014	1188	1	1	0	0	0	0	copy fasta	ITGA11	chr15	68291532	68437163
ITGA11_chr15_68291532_68437163	0/0	a0015	1188	1	0	1	0	0	0	copy fasta	ITGA11	chr15	68291532	68437163
ITGA11_chr15_68291532_68437163	0/0	a0016	1188	1	1	0	0	0	0	copy fasta	ITGA11	chr15	68291532	68437163
ITGA11_chr15_68291532_68437163	0/0	a0017	1188	1	1	0	0	0	0	copy fasta	ITGA11	chr15	68291532	68437163
ITGA11_chr15_68291532_68437163	0/0	a0018	1188	1	0	0	1	0	0	copy fasta	ITGA11	chr15	68291532	68437163
ITGA11_chr15_68291532_68437163	1/0	a0019	1188	1	0	0	0	0	0	copy fasta	ITGA11	chr15	68291532	68437163
ITGA11_chr15_68291532_68437163	0/1	a0020	1188	1	0	0	0	0	0	copy fasta	ITGA11	chr15	68291532	68437163
ITGA11_chr15_68291532_68437163	0/0	a0021	1188	1	0	0	1	0	0	copy fasta	ITGA11	chr15	68291532	68437163
ITGA11_chr15_68291532_68437163	0/0	a0022	1188	1	0	0	0	0	1	copy fasta	ITGA11	chr15	68291532	68437163
ITGA11_chr15_68291532_68437163	0/0	a0023	1188	1	1	0	0	0	0	copy fasta	ITGA11	chr15	68291532	68437163
ITGA1_chr5_52782916_52964209	1/1	a0001	1179	236	68	35	84	12	35	copy fasta	ITGA1	chr5	52782916	52964209
ITGA1_chr5_52782916_52964209	0/0	a0002	1179	42	19	3	19	0	1	copy fasta	ITGA1	chr5	52782916	52964209
ITGA1_chr5_52782916_52964209	0/0	a0003	1179	36	0	9	23	2	2	copy fasta	ITGA1	chr5	52782916	52964209
ITGA1_chr5_52782916_52964209	0/0	a0004	1179	1	1	0	0	0	0	copy fasta	ITGA1	chr5	52782916	52964209
ITGA1_chr5_52782916_52964209	0/0	a0005	1179	1	0	0	1	0	0	copy fasta	ITGA1	chr5	52782916	52964209
ITGA1_chr5_52782916_52964209	0/0	a0006	1179	1	0	0	1	0	0	copy fasta	ITGA1	chr5	52782916	52964209
ITGA1_chr5_52782916_52964209	0/0	a0007	1179	1	0	0	1	0	0	copy fasta	ITGA1	chr5	52782916	52964209
ITGA1_chr5_52782916_52964209	0/0	a0008	1179	1	0	0	0	0	1	copy fasta	ITGA1	chr5	52782916	52964209
ITGA1_chr5_52782916_52964209	0/0	a0009	1179	1	0	1	0	0	0	copy fasta	ITGA1	chr5	52782916	52964209