JoGo: Joint Open Genome and Omics Platform

Search Genic Haplotype Catalog

Haplotypefield

Choose the ACTG layer used to define haplotypes.

Genename

e.g. ALDH2, HBB.

Chr

Chromosome number (1-22, X, Y).

GRCh38

1 = haplotype type matches GRCh38; 0 = does not match.

Chm13v2

1 = haplotype type matches CHM13v2; 0 = does not match.

Gpopname

Filter by superpopulation group.

Popname

Filter by population group.

Total

Minimum number of hits (≥).

Start

Start coordinate (GRCh38).

End

End coordinate (GRCh38).

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regionname	grch38/ chm13v2 1/0: The haplotype type is the same as GRCh38 0/1: The haplotype type is the same as CHM13v2 0/0: The haplotype type matches neither GRCh38 nor CHM13v2 1/1: The haplotype type is the same on both GRCh38 and CHM13v2	ahapid	alen	total	AFR	AMR	EAS	EUR	SAS	aseq	genename	chr	start	end
IVL_chr1_152903546_152916886	0/0	a0007	585	11	0	0	11	0	0	copy fasta	IVL	chr1	152903546	152916886
IVL_chr1_152903546_152916886	0/0	a0008	585	9	0	9	0	0	0	copy fasta	IVL	chr1	152903546	152916886
IVL_chr1_152903546_152916886	0/0	a0009	575	8	0	3	2	0	3	copy fasta	IVL	chr1	152903546	152916886
IVL_chr1_152903546_152916886	0/0	a0010	595	6	0	0	6	0	0	copy fasta	IVL	chr1	152903546	152916886
IVL_chr1_152903546_152916886	0/0	a0011	585	6	6	0	0	0	0	copy fasta	IVL	chr1	152903546	152916886
IVL_chr1_152903546_152916886	0/0	a0012	585	5	5	0	0	0	0	copy fasta	IVL	chr1	152903546	152916886
IVL_chr1_152903546_152916886	0/0	a0013	585	5	5	0	0	0	0	copy fasta	IVL	chr1	152903546	152916886
IVL_chr1_152903546_152916886	0/0	a0014	552	4	4	0	0	0	0	copy fasta	IVL	chr1	152903546	152916886
IVL_chr1_152903546_152916886	0/0	a0015	595	4	4	0	0	0	0	copy fasta	IVL	chr1	152903546	152916886
IVL_chr1_152903546_152916886	0/0	a0016	605	4	0	0	4	0	0	copy fasta	IVL	chr1	152903546	152916886
IVL_chr1_152903546_152916886	0/0	a0017	595	3	0	0	3	0	0	copy fasta	IVL	chr1	152903546	152916886
IVL_chr1_152903546_152916886	0/0	a0018	595	2	2	0	0	0	0	copy fasta	IVL	chr1	152903546	152916886
IVL_chr1_152903546_152916886	0/0	a0019	605	2	2	0	0	0	0	copy fasta	IVL	chr1	152903546	152916886
IVL_chr1_152903546_152916886	0/0	a0020	575	2	2	0	0	0	0	copy fasta	IVL	chr1	152903546	152916886
IVL_chr1_152903546_152916886	0/0	a0021	575	2	0	1	0	1	0	copy fasta	IVL	chr1	152903546	152916886
IVL_chr1_152903546_152916886	0/0	a0022	595	2	0	1	1	0	0	copy fasta	IVL	chr1	152903546	152916886
IVL_chr1_152903546_152916886	0/0	a0023	585	2	0	0	2	0	0	copy fasta	IVL	chr1	152903546	152916886
IVL_chr1_152903546_152916886	0/0	a0024	585	2	0	1	1	0	0	copy fasta	IVL	chr1	152903546	152916886
IVL_chr1_152903546_152916886	0/0	a0025	585	1	0	1	0	0	0	copy fasta	IVL	chr1	152903546	152916886
IVL_chr1_152903546_152916886	0/0	a0026	276	1	0	0	1	0	0	copy fasta	IVL	chr1	152903546	152916886
IVL_chr1_152903546_152916886	0/0	a0027	605	1	1	0	0	0	0	copy fasta	IVL	chr1	152903546	152916886
IVL_chr1_152903546_152916886	0/0	a0028	615	1	1	0	0	0	0	copy fasta	IVL	chr1	152903546	152916886
IVL_chr1_152903546_152916886	0/0	a0029	605	1	1	0	0	0	0	copy fasta	IVL	chr1	152903546	152916886
IVL_chr1_152903546_152916886	0/0	a0030	595	1	1	0	0	0	0	copy fasta	IVL	chr1	152903546	152916886
IVL_chr1_152903546_152916886	0/0	a0031	595	1	1	0	0	0	0	copy fasta	IVL	chr1	152903546	152916886
IVL_chr1_152903546_152916886	0/0	a0032	605	1	0	1	0	0	0	copy fasta	IVL	chr1	152903546	152916886
IVL_chr1_152903546_152916886	0/0	a0033	605	1	0	0	1	0	0	copy fasta	IVL	chr1	152903546	152916886
IVL_chr1_152903546_152916886	0/0	a0034	575	1	1	0	0	0	0	copy fasta	IVL	chr1	152903546	152916886
IVL_chr1_152903546_152916886	0/0	a0035	273	1	0	0	1	0	0	copy fasta	IVL	chr1	152903546	152916886
IVL_chr1_152903546_152916886	0/0	a0036	595	1	0	1	0	0	0	copy fasta	IVL	chr1	152903546	152916886
IVL_chr1_152903546_152916886	0/0	a0037	585	1	0	0	1	0	0	copy fasta	IVL	chr1	152903546	152916886
IVL_chr1_152903546_152916886	0/0	a0038	575	1	0	0	1	0	0	copy fasta	IVL	chr1	152903546	152916886
IVL_chr1_152903546_152916886	0/0	a0039	595	1	0	1	0	0	0	copy fasta	IVL	chr1	152903546	152916886
IVL_chr1_152903546_152916886	0/0	a0040	561	1	1	0	0	0	0	copy fasta	IVL	chr1	152903546	152916886
IVL_chr1_152903546_152916886	0/0	a0041	565	1	1	0	0	0	0	copy fasta	IVL	chr1	152903546	152916886
IVNS1ABP_chr1_185291388_185322243	1/1	a0001	642	369	93	65	169	12	28	copy fasta	IVNS1ABP	chr1	185291388	185322243
IVNS1ABP_chr1_185291388_185322243	0/0	a0002	642	2	0	0	0	0	2	copy fasta	IVNS1ABP	chr1	185291388	185322243
IVNS1ABP_chr1_185291388_185322243	0/0	a0003	642	2	2	0	0	0	0	copy fasta	IVNS1ABP	chr1	185291388	185322243
IVNS1ABP_chr1_185291388_185322243	0/0	a0004	642	2	0	0	0	0	2	copy fasta	IVNS1ABP	chr1	185291388	185322243
IVNS1ABP_chr1_185291388_185322243	0/0	a0005	642	1	0	0	1	0	0	copy fasta	IVNS1ABP	chr1	185291388	185322243
IVNS1ABP_chr1_185291388_185322243	0/0	a0006	642	1	1	0	0	0	0	copy fasta	IVNS1ABP	chr1	185291388	185322243
IVNS1ABP_chr1_185291388_185322243	0/0	a0007	642	1	0	0	1	0	0	copy fasta	IVNS1ABP	chr1	185291388	185322243
IVNS1ABP_chr1_185291388_185322243	0/0	a0008	642	1	0	1	0	0	0	copy fasta	IVNS1ABP	chr1	185291388	185322243
IVNS1ABP_chr1_185291388_185322243	0/0	a0009	642	1	0	0	1	0	0	copy fasta	IVNS1ABP	chr1	185291388	185322243
IWS1_chr2_127475812_127531489	1/1	a0001	819	312	70	56	136	12	36	copy fasta	IWS1	chr2	127475812	127531489
IWS1_chr2_127475812_127531489	0/0	a0002	819	7	7	0	0	0	0	copy fasta	IWS1	chr2	127475812	127531489
IWS1_chr2_127475812_127531489	0/0	a0003	819	6	6	0	0	0	0	copy fasta	IWS1	chr2	127475812	127531489
IWS1_chr2_127475812_127531489	0/0	a0004	819	4	4	0	0	0	0	copy fasta	IWS1	chr2	127475812	127531489
IWS1_chr2_127475812_127531489	0/0	a0005	819	4	4	0	0	0	0	copy fasta	IWS1	chr2	127475812	127531489
IWS1_chr2_127475812_127531489	0/0	a0006	818	3	0	0	3	0	0	copy fasta	IWS1	chr2	127475812	127531489