JoGo: Joint Open Genome and Omics Platform

Search Genic Haplotype Catalog

Haplotypefield

Choose the ACTG layer used to define haplotypes.

Genename

e.g. ALDH2, HBB.

Chr

Chromosome number (1-22, X, Y).

GRCh38

1 = haplotype type matches GRCh38; 0 = does not match.

Chm13v2

1 = haplotype type matches CHM13v2; 0 = does not match.

Gpopname

Filter by superpopulation group.

Popname

Filter by population group.

Total

Minimum number of hits (≥).

Start

Start coordinate (GRCh38).

End

End coordinate (GRCh38).

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regionname	grch38/ chm13v2 1/0: The haplotype type is the same as GRCh38 0/1: The haplotype type is the same as CHM13v2 0/0: The haplotype type matches neither GRCh38 nor CHM13v2 1/1: The haplotype type is the same on both GRCh38 and CHM13v2	ahapid	alen	total	AFR	AMR	EAS	EUR	SAS	aseq	genename	chr	start	end
KANSL3_chr2_96588172_96643312	0/0	a0003	878	8	8	0	0	0	0	copy fasta	KANSL3	chr2	96588172	96643312
KANSL3_chr2_96588172_96643312	0/0	a0004	878	5	0	5	0	0	0	copy fasta	KANSL3	chr2	96588172	96643312
KANSL3_chr2_96588172_96643312	0/0	a0005	878	1	0	0	1	0	0	copy fasta	KANSL3	chr2	96588172	96643312
KANSL3_chr2_96588172_96643312	0/0	a0006	878	1	0	0	1	0	0	copy fasta	KANSL3	chr2	96588172	96643312
KANSL3_chr2_96588172_96643312	0/0	a0007	878	1	1	0	0	0	0	copy fasta	KANSL3	chr2	96588172	96643312
KANSL3_chr2_96588172_96643312	0/0	a0008	878	1	0	1	0	0	0	copy fasta	KANSL3	chr2	96588172	96643312
KANTR_chrX_53089142_53132438	1/1	a0001	76	249	74	35	105	11	22	copy fasta	KANTR	chrX	53089142	53132438
KARS1_chr16_75622724_75652665	1/1	a0001	597	332	61	71	148	12	38	copy fasta	KARS1	chr16	75622724	75652665
KARS1_chr16_75622724_75652665	0/0	a0002	597	31	23	6	2	0	0	copy fasta	KARS1	chr16	75622724	75652665
KARS1_chr16_75622724_75652665	0/0	a0003	597	10	0	0	10	0	0	copy fasta	KARS1	chr16	75622724	75652665
KARS1_chr16_75622724_75652665	0/0	a0004	597	5	0	0	5	0	0	copy fasta	KARS1	chr16	75622724	75652665
KARS1_chr16_75622724_75652665	0/0	a0005	597	1	0	0	1	0	0	copy fasta	KARS1	chr16	75622724	75652665
KARS1_chr16_75622724_75652665	0/0	a0006	597	1	0	1	0	0	0	copy fasta	KARS1	chr16	75622724	75652665
KASH5_chr19_49383249_49422990	0/1	a0001	562	178	41	33	72	7	24	copy fasta	KASH5	chr19	49383249	49422990
KASH5_chr19_49383249_49422990	1/0	a0002	562	167	52	36	61	2	15	copy fasta	KASH5	chr19	49383249	49422990
KASH5_chr19_49383249_49422990	0/0	a0003	562	2	0	1	0	1	0	copy fasta	KASH5	chr19	49383249	49422990
KASH5_chr19_49383249_49422990	0/0	a0004	562	1	0	0	0	0	1	copy fasta	KASH5	chr19	49383249	49422990
KASH5_chr19_49383249_49422990	0/0	a0005	562	1	0	0	0	0	1	copy fasta	KASH5	chr19	49383249	49422990
KASH5_chr19_49383249_49422990	0/0	a0006	562	1	1	0	0	0	0	copy fasta	KASH5	chr19	49383249	49422990
KASH5_chr19_49383249_49422990	0/0	a0007	562	1	0	0	1	0	0	copy fasta	KASH5	chr19	49383249	49422990
KASH5_chr19_49383249_49422990	0/0	a0008	379	1	0	0	1	0	0	copy fasta	KASH5	chr19	49383249	49422990
KASH5_chr19_49383249_49422990	0/0	a0009	562	1	0	0	1	0	0	copy fasta	KASH5	chr19	49383249	49422990
KASH5_chr19_49383249_49422990	0/0	a0010	562	1	0	0	0	0	1	copy fasta	KASH5	chr19	49383249	49422990
KAT14_chr20_18132863_18193035	0/1	a0001	781	337	91	74	111	18	42	copy fasta	KAT14	chr20	18132863	18193035
KAT14_chr20_18132863_18193035	1/0	a0002	781	5	0	2	0	0	2	copy fasta	KAT14	chr20	18132863	18193035
KAT14_chr20_18132863_18193035	0/0	a0003	781	1	0	0	1	0	0	copy fasta	KAT14	chr20	18132863	18193035
KAT14_chr20_18132863_18193035	0/0	a0004	781	1	0	0	1	0	0	copy fasta	KAT14	chr20	18132863	18193035
KAT14_chr20_18132863_18193035	0/0	a0005	781	1	0	0	1	0	0	copy fasta	KAT14	chr20	18132863	18193035
KAT14_chr20_18132863_18193035	0/0	a0006	781	1	1	0	0	0	0	copy fasta	KAT14	chr20	18132863	18193035
KAT2A_chr17_42108111_42126367	1/1	a0001	837	339	83	68	126	18	42	copy fasta	KAT2A	chr17	42108111	42126367
KAT2A_chr17_42108111_42126367	0/0	a0002	835	13	8	0	5	0	0	copy fasta	KAT2A	chr17	42108111	42126367
KAT2A_chr17_42108111_42126367	0/0	a0003	837	1	1	0	0	0	0	copy fasta	KAT2A	chr17	42108111	42126367
KAT2A_chr17_42108111_42126367	0/0	a0004	849	1	0	0	1	0	0	copy fasta	KAT2A	chr17	42108111	42126367
KAT2B_chr3_20035446_20159404	1/1	a0001	832	327	79	71	120	16	39	copy fasta	KAT2B	chr3	20035446	20159404
KAT2B_chr3_20035446_20159404	0/0	a0002	832	39	4	2	32	0	1	copy fasta	KAT2B	chr3	20035446	20159404
KAT2B_chr3_20035446_20159404	0/0	a0003	832	2	0	0	1	1	0	copy fasta	KAT2B	chr3	20035446	20159404
KAT2B_chr3_20035446_20159404	0/0	a0004	832	1	1	0	0	0	0	copy fasta	KAT2B	chr3	20035446	20159404
KAT2B_chr3_20035446_20159404	0/0	a0005	832	1	0	0	0	0	1	copy fasta	KAT2B	chr3	20035446	20159404
KAT2B_chr3_20035446_20159404	0/0	a0006	832	1	0	0	0	1	0	copy fasta	KAT2B	chr3	20035446	20159404
KAT2B_chr3_20035446_20159404	0/0	a0007	832	1	0	0	1	0	0	copy fasta	KAT2B	chr3	20035446	20159404
KAT2B_chr3_20035446_20159404	0/0	a0008	832	1	0	0	0	0	1	copy fasta	KAT2B	chr3	20035446	20159404
KAT2B_chr3_20035446_20159404	0/0	a0009	832	1	0	1	0	0	0	copy fasta	KAT2B	chr3	20035446	20159404
KAT5_chr11_65707252_65724604	1/1	a0001	546	442	94	80	206	18	42	copy fasta	KAT5	chr11	65707252	65724604
KAT6A_chr8_41924479_42056987	1/1	a0001	2004	286	71	49	123	10	31	copy fasta	KAT6A	chr8	41924479	42056987
KAT6A_chr8_41924479_42056987	0/0	a0002	2004	72	7	16	42	0	7	copy fasta	KAT6A	chr8	41924479	42056987
KAT6A_chr8_41924479_42056987	0/0	a0003	2003	4	0	0	4	0	0	copy fasta	KAT6A	chr8	41924479	42056987
KAT6A_chr8_41924479_42056987	0/0	a0004	2004	3	3	0	0	0	0	copy fasta	KAT6A	chr8	41924479	42056987
KAT6A_chr8_41924479_42056987	0/0	a0005	2004	2	0	2	0	0	0	copy fasta	KAT6A	chr8	41924479	42056987
KAT6A_chr8_41924479_42056987	0/0	a0006	2004	2	2	0	0	0	0	copy fasta	KAT6A	chr8	41924479	42056987
KAT6A_chr8_41924479_42056987	0/0	a0007	2004	1	0	0	1	0	0	copy fasta	KAT6A	chr8	41924479	42056987