JoGo: Joint Open Genome and Omics Platform

Search Genic Haplotype Catalog

Haplotypefield

Choose the ACTG layer used to define haplotypes.

Genename

e.g. ALDH2, HBB.

Chr

Chromosome number (1-22, X, Y).

GRCh38

1 = haplotype type matches GRCh38; 0 = does not match.

Chm13v2

1 = haplotype type matches CHM13v2; 0 = does not match.

Gpopname

Filter by superpopulation group.

Popname

Filter by population group.

Total

Minimum number of hits (≥).

Start

Start coordinate (GRCh38).

End

End coordinate (GRCh38).

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regionname	grch38/ chm13v2 1/0: The haplotype type is the same as GRCh38 0/1: The haplotype type is the same as CHM13v2 0/0: The haplotype type matches neither GRCh38 nor CHM13v2 1/1: The haplotype type is the same on both GRCh38 and CHM13v2	ahapid	alen	total	AFR	AMR	EAS	EUR	SAS	aseq	genename	chr	start	end
KCTD16_chr5_144165873_144490686	0/0	a0002	428	1	0	0	0	0	1	copy fasta	KCTD16	chr5	144165873	144490686
KCTD17_chr22_37046742_37068390	1/1	a0001	314	345	80	71	138	14	40	copy fasta	KCTD17	chr22	37046742	37068390
KCTD17_chr22_37046742_37068390	0/0	a0002	314	22	10	6	0	2	4	copy fasta	KCTD17	chr22	37046742	37068390
KCTD17_chr22_37046742_37068390	0/0	a0003	314	2	2	0	0	0	0	copy fasta	KCTD17	chr22	37046742	37068390
KCTD17_chr22_37046742_37068390	0/0	a0004	314	1	0	1	0	0	0	copy fasta	KCTD17	chr22	37046742	37068390
KCTD18_chr2_200483958_200515068	1/0	a0001	426	262	56	45	127	7	26	copy fasta	KCTD18	chr2	200483958	200515068
KCTD18_chr2_200483958_200515068	0/1	a0002	426	138	21	22	75	9	10	copy fasta	KCTD18	chr2	200483958	200515068
KCTD18_chr2_200483958_200515068	0/0	a0003	426	26	2	15	0	2	7	copy fasta	KCTD18	chr2	200483958	200515068
KCTD18_chr2_200483958_200515068	0/0	a0004	426	8	8	0	0	0	0	copy fasta	KCTD18	chr2	200483958	200515068
KCTD18_chr2_200483958_200515068	0/0	a0005	426	3	3	0	0	0	0	copy fasta	KCTD18	chr2	200483958	200515068
KCTD18_chr2_200483958_200515068	0/0	a0006	426	2	2	0	0	0	0	copy fasta	KCTD18	chr2	200483958	200515068
KCTD18_chr2_200483958_200515068	0/0	a0007	426	1	0	0	0	0	1	copy fasta	KCTD18	chr2	200483958	200515068
KCTD18_chr2_200483958_200515068	0/0	a0008	426	1	1	0	0	0	0	copy fasta	KCTD18	chr2	200483958	200515068
KCTD18_chr2_200483958_200515068	0/0	a0009	426	1	1	0	0	0	0	copy fasta	KCTD18	chr2	200483958	200515068
KCTD19_chr16_67284432_67331741	1/1	a0001	926	197	52	47	60	8	28	copy fasta	KCTD19	chr16	67284432	67331741
KCTD19_chr16_67284432_67331741	0/0	a0002	926	25	17	4	0	1	3	copy fasta	KCTD19	chr16	67284432	67331741
KCTD19_chr16_67284432_67331741	0/0	a0003	926	3	2	1	0	0	0	copy fasta	KCTD19	chr16	67284432	67331741
KCTD19_chr16_67284432_67331741	0/0	a0004	926	2	0	0	0	2	0	copy fasta	KCTD19	chr16	67284432	67331741
KCTD19_chr16_67284432_67331741	0/0	a0005	926	2	0	0	0	0	2	copy fasta	KCTD19	chr16	67284432	67331741
KCTD19_chr16_67284432_67331741	0/0	a0006	926	1	1	0	0	0	0	copy fasta	KCTD19	chr16	67284432	67331741
KCTD19_chr16_67284432_67331741	0/0	a0007	926	1	0	0	0	1	0	copy fasta	KCTD19	chr16	67284432	67331741
KCTD19_chr16_67284432_67331741	0/0	a0008	926	1	0	0	0	0	1	copy fasta	KCTD19	chr16	67284432	67331741
KCTD1_chr18_26449910_26553553	1/1	a0001	865	288	84	55	103	15	29	copy fasta	KCTD1	chr18	26449910	26553553
KCTD1_chr18_26449910_26553553	0/0	a0002	615	35	6	10	14	1	4	copy fasta	KCTD1	chr18	26449910	26553553
KCTD1_chr18_26449910_26553553	0/0	a0003	864	9	2	1	0	1	5	copy fasta	KCTD1	chr18	26449910	26553553
KCTD1_chr18_26449910_26553553	0/0	a0004	856	3	0	0	3	0	0	copy fasta	KCTD1	chr18	26449910	26553553
KCTD1_chr18_26449910_26553553	0/0	a0005	865	1	0	0	1	0	0	copy fasta	KCTD1	chr18	26449910	26553553
KCTD1_chr18_26449910_26553553	0/0	a0006	865	1	0	0	1	0	0	copy fasta	KCTD1	chr18	26449910	26553553
KCTD1_chr18_26449910_26553553	0/0	a0007	865	1	0	0	0	1	0	copy fasta	KCTD1	chr18	26449910	26553553
KCTD20_chr6_36438000_36496141	1/1	a0001	419	227	48	48	102	8	19	copy fasta	KCTD20	chr6	36438000	36496141
KCTD20_chr6_36438000_36496141	0/0	a0002	419	132	42	16	56	4	14	copy fasta	KCTD20	chr6	36438000	36496141
KCTD20_chr6_36438000_36496141	0/0	a0003	419	3	0	0	3	0	0	copy fasta	KCTD20	chr6	36438000	36496141
KCTD20_chr6_36438000_36496141	0/0	a0004	419	2	2	0	0	0	0	copy fasta	KCTD20	chr6	36438000	36496141
KCTD20_chr6_36438000_36496141	0/0	a0005	419	1	0	0	0	0	1	copy fasta	KCTD20	chr6	36438000	36496141
KCTD20_chr6_36438000_36496141	0/0	a0006	419	1	0	0	1	0	0	copy fasta	KCTD20	chr6	36438000	36496141
KCTD21_chr11_78166249_78193626	1/1	a0001	260	426	93	78	194	16	43	copy fasta	KCTD21	chr11	78166249	78193626
KCTD21_chr11_78166249_78193626	0/0	a0002	260	2	0	0	2	0	0	copy fasta	KCTD21	chr11	78166249	78193626
KCTD21_chr11_78166249_78193626	0/0	a0003	260	1	0	0	0	0	1	copy fasta	KCTD21	chr11	78166249	78193626
KCTD21_chr11_78166249_78193626	0/0	a0004	260	1	1	0	0	0	0	copy fasta	KCTD21	chr11	78166249	78193626
KCTD2_chr17_75042225_75070886	1/1	a0001	263	406	98	76	166	18	46	copy fasta	KCTD2	chr17	75042225	75070886
KCTD2_chr17_75042225_75070886	0/0	a0002	263	1	0	0	1	0	0	copy fasta	KCTD2	chr17	75042225	75070886
KCTD2_chr17_75042225_75070886	0/0	a0003	263	1	0	0	1	0	0	copy fasta	KCTD2	chr17	75042225	75070886
KCTD3_chr1_215562304_215626807	1/1	a0001	815	216	71	34	85	6	18	copy fasta	KCTD3	chr1	215562304	215626807
KCTD3_chr1_215562304_215626807	0/0	a0002	815	94	5	21	55	2	11	copy fasta	KCTD3	chr1	215562304	215626807
KCTD3_chr1_215562304_215626807	0/0	a0003	815	2	0	0	2	0	0	copy fasta	KCTD3	chr1	215562304	215626807
KCTD3_chr1_215562304_215626807	0/0	a0004	815	1	0	1	0	0	0	copy fasta	KCTD3	chr1	215562304	215626807
KCTD3_chr1_215562304_215626807	0/0	a0005	815	1	0	0	0	0	1	copy fasta	KCTD3	chr1	215562304	215626807
KCTD4_chr13_45187853_45206045	1/1	a0001	259	352	90	60	154	12	34	copy fasta	KCTD4	chr13	45187853	45206045
KCTD5_chr16_2677523_2714030	1/1	a0001	234	412	100	80	162	18	50	copy fasta	KCTD5	chr16	2677523	2714030
KCTD5_chr16_2677523_2714030	0/0	a0002	234	1	0	0	1	0	0	copy fasta	KCTD5	chr16	2677523	2714030