JoGo: Joint Open Genome and Omics Platform

Search Genic Haplotype Catalog

Haplotypefield

Choose the ACTG layer used to define haplotypes.

Genename

e.g. ALDH2, HBB.

Chr

Chromosome number (1-22, X, Y).

GRCh38

1 = haplotype type matches GRCh38; 0 = does not match.

Chm13v2

1 = haplotype type matches CHM13v2; 0 = does not match.

Gpopname

Filter by superpopulation group.

Popname

Filter by population group.

Total

Minimum number of hits (≥).

Start

Start coordinate (GRCh38).

End

End coordinate (GRCh38).

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regionname	grch38/ chm13v2 1/0: The haplotype type is the same as GRCh38 0/1: The haplotype type is the same as CHM13v2 0/0: The haplotype type matches neither GRCh38 nor CHM13v2 1/1: The haplotype type is the same on both GRCh38 and CHM13v2	ahapid	alen	total	AFR	AMR	EAS	EUR	SAS	aseq	genename	chr	start	end
KLF10_chr8_102643784_102660725	0/0	a0004	480	2	0	0	0	2	0	copy fasta	KLF10	chr8	102643784	102660725
KLF10_chr8_102643784_102660725	0/0	a0005	480	1	1	0	0	0	0	copy fasta	KLF10	chr8	102643784	102660725
KLF10_chr8_102643784_102660725	0/0	a0006	480	1	0	0	0	1	0	copy fasta	KLF10	chr8	102643784	102660725
KLF10_chr8_102643784_102660725	0/0	a0007	480	1	0	0	1	0	0	copy fasta	KLF10	chr8	102643784	102660725
KLF10_chr8_102643784_102660725	0/0	a0008	480	1	1	0	0	0	0	copy fasta	KLF10	chr8	102643784	102660725
KLF11_chr2_10038550_10059836	1/1	a0001	512	392	91	71	174	14	40	copy fasta	KLF11	chr2	10038550	10059836
KLF11_chr2_10038550_10059836	0/0	a0002	512	14	3	5	1	2	3	copy fasta	KLF11	chr2	10038550	10059836
KLF11_chr2_10038550_10059836	0/0	a0003	512	4	0	0	3	0	1	copy fasta	KLF11	chr2	10038550	10059836
KLF11_chr2_10038550_10059836	0/0	a0004	512	1	1	0	0	0	0	copy fasta	KLF11	chr2	10038550	10059836
KLF11_chr2_10038550_10059836	0/0	a0005	512	1	1	0	0	0	0	copy fasta	KLF11	chr2	10038550	10059836
KLF11_chr2_10038550_10059836	0/0	a0006	512	1	1	0	0	0	0	copy fasta	KLF11	chr2	10038550	10059836
KLF11_chr2_10038550_10059836	0/0	a0007	512	1	1	0	0	0	0	copy fasta	KLF11	chr2	10038550	10059836
KLF12_chr13_73681089_74139404	1/1	a0001	402	120	50	32	10	2	24	copy fasta	KLF12	chr13	73681089	74139404
KLF13_chr15_31321835_31382899	0/1	a0001	288	400	91	80	177	14	37	copy fasta	KLF13	chr15	31321835	31382899
KLF13_chr15_31321835_31382899	0/0	a0002	287	7	0	0	6	0	1	copy fasta	KLF13	chr15	31321835	31382899
KLF13_chr15_31321835_31382899	0/0	a0003	288	1	1	0	0	0	0	copy fasta	KLF13	chr15	31321835	31382899
KLF13_chr15_31321835_31382899	0/0	a0004	288	1	0	0	1	0	0	copy fasta	KLF13	chr15	31321835	31382899
KLF14_chr7_130725697_130739207	0/1	a0001	323	320	61	55	158	10	35	copy fasta	KLF14	chr7	130725697	130739207
KLF14_chr7_130725697_130739207	1/0	a0002	323	94	12	18	46	4	13	copy fasta	KLF14	chr7	130725697	130739207
KLF14_chr7_130725697_130739207	0/0	a0003	323	21	19	2	0	0	0	copy fasta	KLF14	chr7	130725697	130739207
KLF14_chr7_130725697_130739207	0/0	a0004	323	2	0	0	2	0	0	copy fasta	KLF14	chr7	130725697	130739207
KLF14_chr7_130725697_130739207	0/0	a0005	323	1	1	0	0	0	0	copy fasta	KLF14	chr7	130725697	130739207
KLF14_chr7_130725697_130739207	0/0	a0006	323	1	0	0	1	0	0	copy fasta	KLF14	chr7	130725697	130739207
KLF14_chr7_130725697_130739207	0/0	a0007	323	1	0	1	0	0	0	copy fasta	KLF14	chr7	130725697	130739207
KLF14_chr7_130725697_130739207	0/0	a0008	323	1	1	0	0	0	0	copy fasta	KLF14	chr7	130725697	130739207
KLF14_chr7_130725697_130739207	0/0	a0009	323	1	0	0	1	0	0	copy fasta	KLF14	chr7	130725697	130739207
KLF15_chr3_126337635_126362408	1/1	a0001	416	379	93	71	158	14	41	copy fasta	KLF15	chr3	126337635	126362408
KLF15_chr3_126337635_126362408	0/0	a0002	104	1	0	1	0	0	0	copy fasta	KLF15	chr3	126337635	126362408
KLF15_chr3_126337635_126362408	0/0	a0003	416	1	0	0	0	0	1	copy fasta	KLF15	chr3	126337635	126362408
KLF15_chr3_126337635_126362408	0/0	a0004	416	1	1	0	0	0	0	copy fasta	KLF15	chr3	126337635	126362408
KLF16_chr19_1847399_1868579	0/0	a0000	0	26	7	7	11	0	1	copy fasta	KLF16	chr19	1847399	1868579
KLF16_chr19_1847399_1868579	1/1	a0001	252	348	80	65	150	12	39	copy fasta	KLF16	chr19	1847399	1868579
KLF16_chr19_1847399_1868579	0/0	a0002	252	21	2	2	15	0	2	copy fasta	KLF16	chr19	1847399	1868579
KLF16_chr19_1847399_1868579	0/0	a0003	247	1	1	0	0	0	0	copy fasta	KLF16	chr19	1847399	1868579
KLF16_chr19_1847399_1868579	0/0	a0004	252	1	0	0	1	0	0	copy fasta	KLF16	chr19	1847399	1868579
KLF16_chr19_1847399_1868579	0/0	a0005	89	1	0	0	1	0	0	copy fasta	KLF16	chr19	1847399	1868579
KLF17_chr1_44113821_44140140	0/0	a0001	389	120	5	18	79	9	9	copy fasta	KLF17	chr1	44113821	44140140
KLF17_chr1_44113821_44140140	0/0	a0002	388	113	10	31	56	1	15	copy fasta	KLF17	chr1	44113821	44140140
KLF17_chr1_44113821_44140140	0/1	a0003	389	95	10	19	48	3	14	copy fasta	KLF17	chr1	44113821	44140140
KLF17_chr1_44113821_44140140	1/0	a0004	389	83	46	11	18	3	4	copy fasta	KLF17	chr1	44113821	44140140
KLF17_chr1_44113821_44140140	0/0	a0005	389	23	19	4	0	0	0	copy fasta	KLF17	chr1	44113821	44140140
KLF17_chr1_44113821_44140140	0/0	a0006	389	6	0	0	6	0	0	copy fasta	KLF17	chr1	44113821	44140140
KLF17_chr1_44113821_44140140	0/0	a0007	389	1	0	1	0	0	0	copy fasta	KLF17	chr1	44113821	44140140
KLF17_chr1_44113821_44140140	0/0	a0008	389	1	1	0	0	0	0	copy fasta	KLF17	chr1	44113821	44140140
KLF17_chr1_44113821_44140140	0/0	a0009	389	1	1	0	0	0	0	copy fasta	KLF17	chr1	44113821	44140140
KLF17_chr1_44113821_44140140	0/0	a0010	389	1	0	0	1	0	0	copy fasta	KLF17	chr1	44113821	44140140
KLF18_chr1_44132821_44146631	0/0	a0001	1039	164	52	32	56	3	21	copy fasta	KLF18	chr1	44132821	44146631
KLF18_chr1_44132821_44146631	0/0	a0002	1067	71	1	2	63	1	4	copy fasta	KLF18	chr1	44132821	44146631
KLF18_chr1_44132821_44146631	0/0	a0003	1039	64	12	12	30	0	10	copy fasta	KLF18	chr1	44132821	44146631
KLF18_chr1_44132821_44146631	0/0	a0004	1025	29	0	8	17	3	1	copy fasta	KLF18	chr1	44132821	44146631