JoGo: Joint Open Genome and Omics Platform

Search Genic Haplotype Catalog

Haplotypefield

Choose the ACTG layer used to define haplotypes.

Genename

e.g. ALDH2, HBB.

Chr

Chromosome number (1-22, X, Y).

GRCh38

1 = haplotype type matches GRCh38; 0 = does not match.

Chm13v2

1 = haplotype type matches CHM13v2; 0 = does not match.

Gpopname

Filter by superpopulation group.

Popname

Filter by population group.

Total

Minimum number of hits (≥).

Start

Start coordinate (GRCh38).

End

End coordinate (GRCh38).

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regionname	grch38/ chm13v2 1/0: The haplotype type is the same as GRCh38 0/1: The haplotype type is the same as CHM13v2 0/0: The haplotype type matches neither GRCh38 nor CHM13v2 1/1: The haplotype type is the same on both GRCh38 and CHM13v2	ahapid	alen	total	AFR	AMR	EAS	EUR	SAS	aseq	genename	chr	start	end
KLF18_chr1_44132821_44146631	1/0	a0005	1052	25	2	11	2	5	4	copy fasta	KLF18	chr1	44132821	44146631
KLF18_chr1_44132821_44146631	0/0	a0006	829	15	0	5	9	1	0	copy fasta	KLF18	chr1	44132821	44146631
KLF18_chr1_44132821_44146631	0/0	a0007	1039	11	9	2	0	0	0	copy fasta	KLF18	chr1	44132821	44146631
KLF18_chr1_44132821_44146631	0/0	a0008	1039	11	10	1	0	0	0	copy fasta	KLF18	chr1	44132821	44146631
KLF18_chr1_44132821_44146631	0/0	a0009	1039	5	0	0	5	0	0	copy fasta	KLF18	chr1	44132821	44146631
KLF18_chr1_44132821_44146631	0/0	a0010	1052	4	0	3	0	0	1	copy fasta	KLF18	chr1	44132821	44146631
KLF18_chr1_44132821_44146631	0/0	a0011	899	3	0	0	3	0	0	copy fasta	KLF18	chr1	44132821	44146631
KLF18_chr1_44132821_44146631	0/0	a0012	1039	3	3	0	0	0	0	copy fasta	KLF18	chr1	44132821	44146631
KLF18_chr1_44132821_44146631	0/0	a0013	1025	2	0	0	2	0	0	copy fasta	KLF18	chr1	44132821	44146631
KLF18_chr1_44132821_44146631	0/0	a0014	1052	2	1	1	0	0	0	copy fasta	KLF18	chr1	44132821	44146631
KLF18_chr1_44132821_44146631	0/0	a0015	1039	2	0	0	2	0	0	copy fasta	KLF18	chr1	44132821	44146631
KLF18_chr1_44132821_44146631	0/0	a0016	1039	1	1	0	0	0	0	copy fasta	KLF18	chr1	44132821	44146631
KLF18_chr1_44132821_44146631	0/0	a0017	1067	1	0	0	1	0	0	copy fasta	KLF18	chr1	44132821	44146631
KLF18_chr1_44132821_44146631	0/0	a0018	1067	1	1	0	0	0	0	copy fasta	KLF18	chr1	44132821	44146631
KLF18_chr1_44132821_44146631	0/0	a0019	1052	1	0	0	0	1	0	copy fasta	KLF18	chr1	44132821	44146631
KLF18_chr1_44132821_44146631	0/0	a0020	913	1	0	0	1	0	0	copy fasta	KLF18	chr1	44132821	44146631
KLF18_chr1_44132821_44146631	0/0	a0021	899	1	0	0	1	0	0	copy fasta	KLF18	chr1	44132821	44146631
KLF18_chr1_44132821_44146631	0/0	a0022	1039	1	1	0	0	0	0	copy fasta	KLF18	chr1	44132821	44146631
KLF18_chr1_44132821_44146631	0/0	a0023	1039	1	1	0	0	0	0	copy fasta	KLF18	chr1	44132821	44146631
KLF18_chr1_44132821_44146631	0/0	a0024	1039	1	1	0	0	0	0	copy fasta	KLF18	chr1	44132821	44146631
KLF18_chr1_44132821_44146631	0/0	a0025	1039	1	0	1	0	0	0	copy fasta	KLF18	chr1	44132821	44146631
KLF18_chr1_44132821_44146631	0/0	a0026	913	1	0	1	0	0	0	copy fasta	KLF18	chr1	44132821	44146631
KLF18_chr1_44132821_44146631	0/1	a0027	1025	1	0	0	0	0	0	copy fasta	KLF18	chr1	44132821	44146631
KLF18_chr1_44132821_44146631	0/0	a0028	1039	1	0	0	1	0	0	copy fasta	KLF18	chr1	44132821	44146631
KLF18_chr1_44132821_44146631	0/0	a0029	1039	1	1	0	0	0	0	copy fasta	KLF18	chr1	44132821	44146631
KLF18_chr1_44132821_44146631	0/0	a0030	1039	1	0	0	0	0	1	copy fasta	KLF18	chr1	44132821	44146631
KLF18_chr1_44132821_44146631	0/0	a0031	913	1	0	1	0	0	0	copy fasta	KLF18	chr1	44132821	44146631
KLF18_chr1_44132821_44146631	0/0	a0032	1039	1	0	0	1	0	0	copy fasta	KLF18	chr1	44132821	44146631
KLF1_chr19_12879422_12892201	1/0	a0001	362	170	52	47	40	10	20	copy fasta	KLF1	chr19	12879422	12892201
KLF1_chr19_12879422_12892201	0/1	a0002	362	151	24	24	80	5	17	copy fasta	KLF1	chr19	12879422	12892201
KLF1_chr19_12879422_12892201	0/0	a0003	362	33	15	5	9	3	1	copy fasta	KLF1	chr19	12879422	12892201
KLF1_chr19_12879422_12892201	0/0	a0004	362	15	0	0	15	0	0	copy fasta	KLF1	chr19	12879422	12892201
KLF1_chr19_12879422_12892201	0/0	a0005	362	2	2	0	0	0	0	copy fasta	KLF1	chr19	12879422	12892201
KLF1_chr19_12879422_12892201	0/0	a0006	362	1	1	0	0	0	0	copy fasta	KLF1	chr19	12879422	12892201
KLF2_chr19_16319826_16333685	0/1	a0001	355	307	93	70	96	8	39	copy fasta	KLF2	chr19	16319826	16333685
KLF2_chr19_16319826_16333685	1/0	a0002	355	125	1	10	96	10	7	copy fasta	KLF2	chr19	16319826	16333685
KLF2_chr19_16319826_16333685	0/0	a0003	355	7	0	0	7	0	0	copy fasta	KLF2	chr19	16319826	16333685
KLF2_chr19_16319826_16333685	0/0	a0004	355	1	0	0	0	0	1	copy fasta	KLF2	chr19	16319826	16333685
KLF2_chr19_16319826_16333685	0/0	a0005	355	1	0	0	1	0	0	copy fasta	KLF2	chr19	16319826	16333685
KLF2_chr19_16319826_16333685	0/0	a0006	355	1	1	0	0	0	0	copy fasta	KLF2	chr19	16319826	16333685
KLF2_chr19_16319826_16333685	0/0	a0007	355	1	1	0	0	0	0	copy fasta	KLF2	chr19	16319826	16333685
KLF2_chr19_16319826_16333685	0/0	a0008	355	1	0	0	0	0	1	copy fasta	KLF2	chr19	16319826	16333685
KLF3_chr4_38659199_38706517	1/1	a0001	345	396	90	70	174	14	46	copy fasta	KLF3	chr4	38659199	38706517
KLF4_chr9_107479852_107494769	1/1	a0001	479	421	96	71	189	17	46	copy fasta	KLF4	chr9	107479852	107494769
KLF4_chr9_107479852_107494769	0/0	a0002	479	3	0	0	3	0	0	copy fasta	KLF4	chr9	107479852	107494769
KLF4_chr9_107479852_107494769	0/0	a0003	462	1	0	1	0	0	0	copy fasta	KLF4	chr9	107479852	107494769
KLF4_chr9_107479852_107494769	0/0	a0004	479	1	0	0	1	0	0	copy fasta	KLF4	chr9	107479852	107494769
KLF4_chr9_107479852_107494769	0/0	a0005	479	1	0	0	0	1	0	copy fasta	KLF4	chr9	107479852	107494769
KLF4_chr9_107479852_107494769	0/0	a0006	204	1	0	0	1	0	0	copy fasta	KLF4	chr9	107479852	107494769
KLF5_chr13_73054005_73082538	1/1	a0001	457	437	90	81	202	16	46	copy fasta	KLF5	chr13	73054005	73082538