JoGo: Joint Open Genome and Omics Platform

Search Genic Haplotype Catalog

Haplotypefield

Choose the ACTG layer used to define haplotypes.

Genename

e.g. ALDH2, HBB.

Chr

Chromosome number (1-22, X, Y).

GRCh38

1 = haplotype type matches GRCh38; 0 = does not match.

Chm13v2

1 = haplotype type matches CHM13v2; 0 = does not match.

Gpopname

Filter by superpopulation group.

Popname

Filter by population group.

Total

Minimum number of hits (≥).

Start

Start coordinate (GRCh38).

End

End coordinate (GRCh38).

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regionname	grch38/ chm13v2 1/0: The haplotype type is the same as GRCh38 0/1: The haplotype type is the same as CHM13v2 0/0: The haplotype type matches neither GRCh38 nor CHM13v2 1/1: The haplotype type is the same on both GRCh38 and CHM13v2	ahapid	alen	total	AFR	AMR	EAS	EUR	SAS	aseq	genename	chr	start	end
KLHL28_chr14_44919324_44966947	0/0	a0004	571	1	0	0	1	0	0	copy fasta	KLHL28	chr14	44919324	44966947
KLHL28_chr14_44919324_44966947	0/0	a0005	571	1	0	0	0	0	1	copy fasta	KLHL28	chr14	44919324	44966947
KLHL28_chr14_44919324_44966947	0/0	a0006	571	1	0	0	1	0	0	copy fasta	KLHL28	chr14	44919324	44966947
KLHL28_chr14_44919324_44966947	0/0	a0007	571	1	0	1	0	0	0	copy fasta	KLHL28	chr14	44919324	44966947
KLHL29_chr2_23380179_23713606	1/1	a0001	875	157	55	38	32	6	24	copy fasta	KLHL29	chr2	23380179	23713606
KLHL29_chr2_23380179_23713606	0/0	a0002	875	2	0	0	0	0	2	copy fasta	KLHL29	chr2	23380179	23713606
KLHL29_chr2_23380179_23713606	0/0	a0003	875	1	1	0	0	0	0	copy fasta	KLHL29	chr2	23380179	23713606
KLHL2_chr4_165202561_165328147	1/1	a0001	593	250	86	42	92	10	18	copy fasta	KLHL2	chr4	165202561	165328147
KLHL2_chr4_165202561_165328147	0/0	a0002	593	4	4	0	0	0	0	copy fasta	KLHL2	chr4	165202561	165328147
KLHL30_chr2_238133668_238157947	0/0	a0001	578	183	36	21	108	5	13	copy fasta	KLHL30	chr2	238133668	238157947
KLHL30_chr2_238133668_238157947	0/1	a0002	578	135	26	22	61	8	17	copy fasta	KLHL30	chr2	238133668	238157947
KLHL30_chr2_238133668_238157947	1/0	a0003	578	100	21	34	26	5	13	copy fasta	KLHL30	chr2	238133668	238157947
KLHL30_chr2_238133668_238157947	0/0	a0004	578	10	0	4	5	0	1	copy fasta	KLHL30	chr2	238133668	238157947
KLHL30_chr2_238133668_238157947	0/0	a0005	578	7	7	0	0	0	0	copy fasta	KLHL30	chr2	238133668	238157947
KLHL30_chr2_238133668_238157947	0/0	a0006	578	2	2	0	0	0	0	copy fasta	KLHL30	chr2	238133668	238157947
KLHL30_chr2_238133668_238157947	0/0	a0007	578	2	2	0	0	0	0	copy fasta	KLHL30	chr2	238133668	238157947
KLHL30_chr2_238133668_238157947	0/0	a0008	578	1	0	1	0	0	0	copy fasta	KLHL30	chr2	238133668	238157947
KLHL30_chr2_238133668_238157947	0/0	a0009	578	1	0	0	1	0	0	copy fasta	KLHL30	chr2	238133668	238157947
KLHL30_chr2_238133668_238157947	0/0	a0010	578	1	0	0	1	0	0	copy fasta	KLHL30	chr2	238133668	238157947
KLHL30_chr2_238133668_238157947	0/0	a0011	578	1	0	1	0	0	0	copy fasta	KLHL30	chr2	238133668	238157947
KLHL30_chr2_238133668_238157947	0/0	a0012	578	1	0	0	1	0	0	copy fasta	KLHL30	chr2	238133668	238157947
KLHL30_chr2_238133668_238157947	0/0	a0013	578	1	0	0	1	0	0	copy fasta	KLHL30	chr2	238133668	238157947
KLHL30_chr2_238133668_238157947	0/0	a0014	578	1	0	1	0	0	0	copy fasta	KLHL30	chr2	238133668	238157947
KLHL30_chr2_238133668_238157947	0/0	a0015	578	1	0	0	1	0	0	copy fasta	KLHL30	chr2	238133668	238157947
KLHL30_chr2_238133668_238157947	0/0	a0016	578	1	0	0	0	0	1	copy fasta	KLHL30	chr2	238133668	238157947
KLHL30_chr2_238133668_238157947	0/0	a0017	156	1	0	0	0	0	1	copy fasta	KLHL30	chr2	238133668	238157947
KLHL30_chr2_238133668_238157947	0/0	a0018	578	1	0	0	1	0	0	copy fasta	KLHL30	chr2	238133668	238157947
KLHL31_chr6_53642916_53670756	0/1	a0001	634	355	74	63	162	14	41	copy fasta	KLHL31	chr6	53642916	53670756
KLHL31_chr6_53642916_53670756	1/0	a0002	634	53	15	9	21	2	5	copy fasta	KLHL31	chr6	53642916	53670756
KLHL31_chr6_53642916_53670756	0/0	a0003	634	4	4	0	0	0	0	copy fasta	KLHL31	chr6	53642916	53670756
KLHL31_chr6_53642916_53670756	0/0	a0004	634	3	0	0	3	0	0	copy fasta	KLHL31	chr6	53642916	53670756
KLHL31_chr6_53642916_53670756	0/0	a0005	634	2	0	0	2	0	0	copy fasta	KLHL31	chr6	53642916	53670756
KLHL31_chr6_53642916_53670756	0/0	a0006	634	2	0	2	0	0	0	copy fasta	KLHL31	chr6	53642916	53670756
KLHL31_chr6_53642916_53670756	0/0	a0007	634	1	1	0	0	0	0	copy fasta	KLHL31	chr6	53642916	53670756
KLHL32_chr6_96919728_97145753	1/1	a0001	620	216	57	35	96	8	18	copy fasta	KLHL32	chr6	96919728	97145753
KLHL32_chr6_96919728_97145753	0/0	a0002	620	21	10	1	9	0	1	copy fasta	KLHL32	chr6	96919728	97145753
KLHL32_chr6_96919728_97145753	0/0	a0003	620	3	0	0	3	0	0	copy fasta	KLHL32	chr6	96919728	97145753
KLHL32_chr6_96919728_97145753	0/0	a0004	620	1	0	0	0	0	1	copy fasta	KLHL32	chr6	96919728	97145753
KLHL32_chr6_96919728_97145753	0/0	a0005	620	1	1	0	0	0	0	copy fasta	KLHL32	chr6	96919728	97145753
KLHL32_chr6_96919728_97145753	0/0	a0006	620	1	1	0	0	0	0	copy fasta	KLHL32	chr6	96919728	97145753
KLHL32_chr6_96919728_97145753	0/0	a0007	620	1	1	0	0	0	0	copy fasta	KLHL32	chr6	96919728	97145753
KLHL33_chr14_20420852_20441166	0/0	a0001	797	171	15	44	89	4	19	copy fasta	KLHL33	chr14	20420852	20441166
KLHL33_chr14_20420852_20441166	0/0	a0002	797	60	3	5	44	5	3	copy fasta	KLHL33	chr14	20420852	20441166
KLHL33_chr14_20420852_20441166	0/0	a0003	797	54	13	15	14	3	9	copy fasta	KLHL33	chr14	20420852	20441166
KLHL33_chr14_20420852_20441166	0/1	a0004	797	53	7	7	35	2	1	copy fasta	KLHL33	chr14	20420852	20441166
KLHL33_chr14_20420852_20441166	0/0	a0005	797	28	24	2	2	0	0	copy fasta	KLHL33	chr14	20420852	20441166
KLHL33_chr14_20420852_20441166	0/0	a0006	797	26	5	3	17	0	1	copy fasta	KLHL33	chr14	20420852	20441166
KLHL33_chr14_20420852_20441166	0/0	a0007	797	20	8	4	1	2	5	copy fasta	KLHL33	chr14	20420852	20441166
KLHL33_chr14_20420852_20441166	0/0	a0008	797	8	4	0	4	0	0	copy fasta	KLHL33	chr14	20420852	20441166
KLHL33_chr14_20420852_20441166	0/0	a0009	797	5	0	0	5	0	0	copy fasta	KLHL33	chr14	20420852	20441166