JoGo: Joint Open Genome and Omics Platform

Search Genic Haplotype Catalog

Haplotypefield

Choose the ACTG layer used to define haplotypes.

Genename

e.g. ALDH2, HBB.

Chr

Chromosome number (1-22, X, Y).

GRCh38

1 = haplotype type matches GRCh38; 0 = does not match.

Chm13v2

1 = haplotype type matches CHM13v2; 0 = does not match.

Gpopname

Filter by superpopulation group.

Popname

Filter by population group.

Total

Minimum number of hits (≥).

Start

Start coordinate (GRCh38).

End

End coordinate (GRCh38).

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regionname	grch38/ chm13v2 1/0: The haplotype type is the same as GRCh38 0/1: The haplotype type is the same as CHM13v2 0/0: The haplotype type matches neither GRCh38 nor CHM13v2 1/1: The haplotype type is the same on both GRCh38 and CHM13v2	ahapid	alen	total	AFR	AMR	EAS	EUR	SAS	aseq	genename	chr	start	end
KLHL38_chr8_123639442_123658801	0/0	a0004	581	32	0	4	25	1	2	copy fasta	KLHL38	chr8	123639442	123658801
KLHL38_chr8_123639442_123658801	0/0	a0005	581	9	0	5	0	4	0	copy fasta	KLHL38	chr8	123639442	123658801
KLHL38_chr8_123639442_123658801	0/0	a0006	581	6	6	0	0	0	0	copy fasta	KLHL38	chr8	123639442	123658801
KLHL38_chr8_123639442_123658801	0/0	a0007	581	5	5	0	0	0	0	copy fasta	KLHL38	chr8	123639442	123658801
KLHL38_chr8_123639442_123658801	0/0	a0008	581	4	1	0	2	0	1	copy fasta	KLHL38	chr8	123639442	123658801
KLHL38_chr8_123639442_123658801	0/0	a0009	581	3	0	0	3	0	0	copy fasta	KLHL38	chr8	123639442	123658801
KLHL38_chr8_123639442_123658801	0/0	a0010	581	2	1	1	0	0	0	copy fasta	KLHL38	chr8	123639442	123658801
KLHL38_chr8_123639442_123658801	0/0	a0011	581	2	2	0	0	0	0	copy fasta	KLHL38	chr8	123639442	123658801
KLHL38_chr8_123639442_123658801	0/0	a0012	581	2	0	1	0	0	1	copy fasta	KLHL38	chr8	123639442	123658801
KLHL38_chr8_123639442_123658801	0/0	a0013	581	1	0	1	0	0	0	copy fasta	KLHL38	chr8	123639442	123658801
KLHL38_chr8_123639442_123658801	0/0	a0014	581	1	0	0	0	0	1	copy fasta	KLHL38	chr8	123639442	123658801
KLHL38_chr8_123639442_123658801	0/0	a0015	581	1	1	0	0	0	0	copy fasta	KLHL38	chr8	123639442	123658801
KLHL38_chr8_123639442_123658801	0/0	a0016	581	1	0	0	0	0	1	copy fasta	KLHL38	chr8	123639442	123658801
KLHL38_chr8_123639442_123658801	0/0	a0017	581	1	1	0	0	0	0	copy fasta	KLHL38	chr8	123639442	123658801
KLHL38_chr8_123639442_123658801	0/0	a0018	581	1	1	0	0	0	0	copy fasta	KLHL38	chr8	123639442	123658801
KLHL38_chr8_123639442_123658801	0/0	a0019	581	1	0	0	1	0	0	copy fasta	KLHL38	chr8	123639442	123658801
KLHL38_chr8_123639442_123658801	0/0	a0020	548	1	0	0	1	0	0	copy fasta	KLHL38	chr8	123639442	123658801
KLHL38_chr8_123639442_123658801	0/0	a0021	581	1	0	0	1	0	0	copy fasta	KLHL38	chr8	123639442	123658801
KLHL38_chr8_123639442_123658801	0/0	a0022	581	1	0	0	1	0	0	copy fasta	KLHL38	chr8	123639442	123658801
KLHL38_chr8_123639442_123658801	0/0	a0023	581	1	0	0	0	0	1	copy fasta	KLHL38	chr8	123639442	123658801
KLHL38_chr8_123639442_123658801	0/0	a0024	581	1	1	0	0	0	0	copy fasta	KLHL38	chr8	123639442	123658801
KLHL3_chr5_137612500_137741089	1/1	a0001	587	250	82	62	52	14	38	copy fasta	KLHL3	chr5	137612500	137741089
KLHL3_chr5_137612500_137741089	0/0	a0002	587	1	1	0	0	0	0	copy fasta	KLHL3	chr5	137612500	137741089
KLHL3_chr5_137612500_137741089	0/0	a0003	587	1	1	0	0	0	0	copy fasta	KLHL3	chr5	137612500	137741089
KLHL40_chr3_42680537_42697544	0/1	a0001	621	275	35	51	141	12	35	copy fasta	KLHL40	chr3	42680537	42697544
KLHL40_chr3_42680537_42697544	0/0	a0002	621	116	53	22	29	3	9	copy fasta	KLHL40	chr3	42680537	42697544
KLHL40_chr3_42680537_42697544	1/0	a0003	621	21	1	13	0	1	5	copy fasta	KLHL40	chr3	42680537	42697544
KLHL40_chr3_42680537_42697544	0/0	a0004	621	9	0	2	7	0	0	copy fasta	KLHL40	chr3	42680537	42697544
KLHL40_chr3_42680537_42697544	0/0	a0005	620	7	7	0	0	0	0	copy fasta	KLHL40	chr3	42680537	42697544
KLHL40_chr3_42680537_42697544	0/0	a0006	621	3	0	0	3	0	0	copy fasta	KLHL40	chr3	42680537	42697544
KLHL40_chr3_42680537_42697544	0/0	a0007	621	2	0	0	2	0	0	copy fasta	KLHL40	chr3	42680537	42697544
KLHL40_chr3_42680537_42697544	0/0	a0008	621	2	0	0	2	0	0	copy fasta	KLHL40	chr3	42680537	42697544
KLHL40_chr3_42680537_42697544	0/0	a0009	621	1	0	0	0	0	1	copy fasta	KLHL40	chr3	42680537	42697544
KLHL40_chr3_42680537_42697544	0/0	a0010	621	1	0	0	1	0	0	copy fasta	KLHL40	chr3	42680537	42697544
KLHL40_chr3_42680537_42697544	0/0	a0011	621	1	0	0	1	0	0	copy fasta	KLHL40	chr3	42680537	42697544
KLHL41_chr2_169504702_169531258	1/1	a0001	606	398	89	53	201	12	41	copy fasta	KLHL41	chr2	169504702	169531258
KLHL41_chr2_169504702_169531258	0/0	a0002	606	13	2	5	1	1	4	copy fasta	KLHL41	chr2	169504702	169531258
KLHL41_chr2_169504702_169531258	0/0	a0003	606	3	3	0	0	0	0	copy fasta	KLHL41	chr2	169504702	169531258
KLHL41_chr2_169504702_169531258	0/0	a0004	606	2	0	0	0	1	1	copy fasta	KLHL41	chr2	169504702	169531258
KLHL41_chr2_169504702_169531258	0/0	a0005	606	2	0	2	0	0	0	copy fasta	KLHL41	chr2	169504702	169531258
KLHL41_chr2_169504702_169531258	0/0	a0006	606	1	1	0	0	0	0	copy fasta	KLHL41	chr2	169504702	169531258
KLHL41_chr2_169504702_169531258	0/0	a0007	606	1	0	0	1	0	0	copy fasta	KLHL41	chr2	169504702	169531258
KLHL41_chr2_169504702_169531258	0/0	a0008	606	1	0	0	1	0	0	copy fasta	KLHL41	chr2	169504702	169531258
KLHL41_chr2_169504702_169531258	0/0	a0009	606	1	1	0	0	0	0	copy fasta	KLHL41	chr2	169504702	169531258
KLHL42_chr12_27775233_27808040	1/1	a0001	505	417	95	73	188	15	44	copy fasta	KLHL42	chr12	27775233	27808040
KLHL42_chr12_27775233_27808040	0/0	a0002	505	1	0	1	0	0	0	copy fasta	KLHL42	chr12	27775233	27808040
KLHL42_chr12_27775233_27808040	0/0	a0003	505	1	0	0	0	1	0	copy fasta	KLHL42	chr12	27775233	27808040
KLHL42_chr12_27775233_27808040	0/0	a0004	505	1	1	0	0	0	0	copy fasta	KLHL42	chr12	27775233	27808040
KLHL4_chrX_87512802_87675050	1/1	a0001	718	259	60	43	113	7	34	copy fasta	KLHL4	chrX	87512802	87675050
KLHL5_chr4_39057232_39131233	1/1	a0001	709	302	79	52	138	6	25	copy fasta	KLHL5	chr4	39057232	39131233