JoGo: Joint Open Genome and Omics Platform

Search Genic Haplotype Catalog

Haplotypefield

Choose the ACTG layer used to define haplotypes.

Genename

e.g. ALDH2, HBB.

Chr

Chromosome number (1-22, X, Y).

GRCh38

1 = haplotype type matches GRCh38; 0 = does not match.

Chm13v2

1 = haplotype type matches CHM13v2; 0 = does not match.

Gpopname

Filter by superpopulation group.

Popname

Filter by population group.

Total

Minimum number of hits (≥).

Start

Start coordinate (GRCh38).

End

End coordinate (GRCh38).

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regionname	grch38/ chm13v2 1/0: The haplotype type is the same as GRCh38 0/1: The haplotype type is the same as CHM13v2 0/0: The haplotype type matches neither GRCh38 nor CHM13v2 1/1: The haplotype type is the same on both GRCh38 and CHM13v2	ahapid	alen	total	AFR	AMR	EAS	EUR	SAS	aseq	genename	chr	start	end
KLK14_chr19_51072897_51087887	0/0	a0006	251	2	2	0	0	0	0	copy fasta	KLK14	chr19	51072897	51087887
KLK14_chr19_51072897_51087887	0/0	a0007	251	2	0	0	0	0	2	copy fasta	KLK14	chr19	51072897	51087887
KLK14_chr19_51072897_51087887	0/0	a0008	251	2	0	0	2	0	0	copy fasta	KLK14	chr19	51072897	51087887
KLK14_chr19_51072897_51087887	0/0	a0009	251	2	2	0	0	0	0	copy fasta	KLK14	chr19	51072897	51087887
KLK14_chr19_51072897_51087887	0/0	a0010	251	2	2	0	0	0	0	copy fasta	KLK14	chr19	51072897	51087887
KLK14_chr19_51072897_51087887	0/0	a0011	251	1	0	0	1	0	0	copy fasta	KLK14	chr19	51072897	51087887
KLK14_chr19_51072897_51087887	0/0	a0012	251	1	0	1	0	0	0	copy fasta	KLK14	chr19	51072897	51087887
KLK14_chr19_51072897_51087887	0/0	a0013	251	1	0	0	1	0	0	copy fasta	KLK14	chr19	51072897	51087887
KLK14_chr19_51072897_51087887	0/0	a0014	251	1	1	0	0	0	0	copy fasta	KLK14	chr19	51072897	51087887
KLK14_chr19_51072897_51087887	0/0	a0015	251	1	0	1	0	0	0	copy fasta	KLK14	chr19	51072897	51087887
KLK14_chr19_51072897_51087887	0/0	a0016	251	1	1	0	0	0	0	copy fasta	KLK14	chr19	51072897	51087887
KLK14_chr19_51072897_51087887	0/0	a0017	251	1	0	1	0	0	0	copy fasta	KLK14	chr19	51072897	51087887
KLK15_chr19_50820289_50838574	1/1	a0001	256	418	78	80	196	14	48	copy fasta	KLK15	chr19	50820289	50838574
KLK15_chr19_50820289_50838574	0/0	a0002	256	6	6	0	0	0	0	copy fasta	KLK15	chr19	50820289	50838574
KLK15_chr19_50820289_50838574	0/0	a0003	256	4	4	0	0	0	0	copy fasta	KLK15	chr19	50820289	50838574
KLK15_chr19_50820289_50838574	0/0	a0004	256	3	3	0	0	0	0	copy fasta	KLK15	chr19	50820289	50838574
KLK15_chr19_50820289_50838574	0/0	a0005	256	3	0	2	0	1	0	copy fasta	KLK15	chr19	50820289	50838574
KLK15_chr19_50820289_50838574	0/0	a0006	256	2	0	1	0	1	0	copy fasta	KLK15	chr19	50820289	50838574
KLK15_chr19_50820289_50838574	0/0	a0007	16	2	1	1	0	0	0	copy fasta	KLK15	chr19	50820289	50838574
KLK15_chr19_50820289_50838574	0/0	a0008	256	1	1	0	0	0	0	copy fasta	KLK15	chr19	50820289	50838574
KLK15_chr19_50820289_50838574	0/0	a0009	256	1	1	0	0	0	0	copy fasta	KLK15	chr19	50820289	50838574
KLK15_chr19_50820289_50838574	0/0	a0010	256	1	1	0	0	0	0	copy fasta	KLK15	chr19	50820289	50838574
KLK15_chr19_50820289_50838574	0/0	a0011	256	1	1	0	0	0	0	copy fasta	KLK15	chr19	50820289	50838574
KLK1_chr19_50814146_50828787	0/0	a0001	262	150	41	30	58	6	15	copy fasta	KLK1	chr19	50814146	50828787
KLK1_chr19_50814146_50828787	0/1	a0002	262	136	9	27	78	7	14	copy fasta	KLK1	chr19	50814146	50828787
KLK1_chr19_50814146_50828787	1/0	a0003	262	121	34	23	41	5	17	copy fasta	KLK1	chr19	50814146	50828787
KLK1_chr19_50814146_50828787	0/0	a0004	262	13	12	1	0	0	0	copy fasta	KLK1	chr19	50814146	50828787
KLK1_chr19_50814146_50828787	0/0	a0005	131	1	0	1	0	0	0	copy fasta	KLK1	chr19	50814146	50828787
KLK1_chr19_50814146_50828787	0/0	a0006	262	1	0	0	1	0	0	copy fasta	KLK1	chr19	50814146	50828787
KLK2_chr19_50868439_50885567	1/1	a0001	261	329	49	59	166	12	41	copy fasta	KLK2	chr19	50868439	50885567
KLK2_chr19_50868439_50885567	0/0	a0002	261	113	36	22	40	6	9	copy fasta	KLK2	chr19	50868439	50885567
KLK2_chr19_50868439_50885567	0/0	a0003	261	10	8	2	0	0	0	copy fasta	KLK2	chr19	50868439	50885567
KLK2_chr19_50868439_50885567	0/0	a0004	261	1	1	0	0	0	0	copy fasta	KLK2	chr19	50868439	50885567
KLK2_chr19_50868439_50885567	0/0	a0005	261	1	0	1	0	0	0	copy fasta	KLK2	chr19	50868439	50885567
KLK2_chr19_50868439_50885567	0/0	a0006	261	1	1	0	0	0	0	copy fasta	KLK2	chr19	50868439	50885567
KLK2_chr19_50868439_50885567	0/0	a0007	261	1	1	0	0	0	0	copy fasta	KLK2	chr19	50868439	50885567
KLK3_chr19_50849915_50865764	1/1	a0001	261	399	83	67	190	13	44	copy fasta	KLK3	chr19	50849915	50865764
KLK3_chr19_50849915_50865764	0/0	a0002	261	33	14	3	15	1	0	copy fasta	KLK3	chr19	50849915	50865764
KLK3_chr19_50849915_50865764	0/0	a0003	261	16	0	6	0	4	6	copy fasta	KLK3	chr19	50849915	50865764
KLK3_chr19_50849915_50865764	0/0	a0004	261	9	0	8	1	0	0	copy fasta	KLK3	chr19	50849915	50865764
KLK3_chr19_50849915_50865764	0/0	a0005	261	2	2	0	0	0	0	copy fasta	KLK3	chr19	50849915	50865764
KLK3_chr19_50849915_50865764	0/0	a0006	261	2	0	0	2	0	0	copy fasta	KLK3	chr19	50849915	50865764
KLK3_chr19_50849915_50865764	0/0	a0007	261	1	1	0	0	0	0	copy fasta	KLK3	chr19	50849915	50865764
KLK4_chr19_50901351_50916395	1/1	a0001	254	341	65	77	144	15	38	copy fasta	KLK4	chr19	50901351	50916395
KLK4_chr19_50901351_50916395	0/0	a0002	254	62	27	5	21	2	7	copy fasta	KLK4	chr19	50901351	50916395
KLK4_chr19_50901351_50916395	0/0	a0003	254	6	5	1	0	0	0	copy fasta	KLK4	chr19	50901351	50916395
KLK4_chr19_50901351_50916395	0/0	a0004	254	1	1	0	0	0	0	copy fasta	KLK4	chr19	50901351	50916395
KLK4_chr19_50901351_50916395	0/0	a0005	254	1	0	1	0	0	0	copy fasta	KLK4	chr19	50901351	50916395
KLK4_chr19_50901351_50916395	0/0	a0006	254	1	0	0	1	0	0	copy fasta	KLK4	chr19	50901351	50916395
KLK4_chr19_50901351_50916395	0/0	a0007	254	1	0	0	0	1	0	copy fasta	KLK4	chr19	50901351	50916395