JoGo: Joint Open Genome and Omics Platform

Search Genic Haplotype Catalog

Haplotypefield

Choose the ACTG layer used to define haplotypes.

Genename

e.g. ALDH2, HBB.

Chr

Chromosome number (1-22, X, Y).

GRCh38

1 = haplotype type matches GRCh38; 0 = does not match.

Chm13v2

1 = haplotype type matches CHM13v2; 0 = does not match.

Gpopname

Filter by superpopulation group.

Popname

Filter by population group.

Total

Minimum number of hits (≥).

Start

Start coordinate (GRCh38).

End

End coordinate (GRCh38).

Sort By

Choose a field to sort by.

Order by

Ascending / Descending.

Show

Results per page.

regionname	grch38/ chm13v2 1/0: The haplotype type is the same as GRCh38 0/1: The haplotype type is the same as CHM13v2 0/0: The haplotype type matches neither GRCh38 nor CHM13v2 1/1: The haplotype type is the same on both GRCh38 and CHM13v2	ahapid	alen	total	AFR	AMR	EAS	EUR	SAS	aseq	genename	chr	start	end
KRTAP13-2_chr21_30366390_30377271	0/0	a0007	134	1	0	0	0	0	1	copy fasta	KRTAP13-2	chr21	30366390	30377271
KRTAP13-2_chr21_30366390_30377271	0/0	a0008	14	1	0	0	1	0	0	copy fasta	KRTAP13-2	chr21	30366390	30377271
KRTAP13-2_chr21_30366390_30377271	0/0	a0009	175	1	1	0	0	0	0	copy fasta	KRTAP13-2	chr21	30366390	30377271
KRTAP13-2_chr21_30366390_30377271	0/0	a0010	134	1	1	0	0	0	0	copy fasta	KRTAP13-2	chr21	30366390	30377271
KRTAP13-2_chr21_30366390_30377271	0/0	a0011	175	1	1	0	0	0	0	copy fasta	KRTAP13-2	chr21	30366390	30377271
KRTAP13-3_chr21_30420380_30430926	1/1	a0001	172	412	98	76	182	16	38	copy fasta	KRTAP13-3	chr21	30420380	30430926
KRTAP13-3_chr21_30420380_30430926	0/0	a0002	172	1	0	0	1	0	0	copy fasta	KRTAP13-3	chr21	30420380	30430926
KRTAP13-3_chr21_30420380_30430926	0/0	a0003	172	1	0	0	1	0	0	copy fasta	KRTAP13-3	chr21	30420380	30430926
KRTAP13-4_chr21_30425220_30436026	1/0	a0001	160	205	31	26	128	6	13	copy fasta	KRTAP13-4	chr21	30425220	30436026
KRTAP13-4_chr21_30425220_30436026	0/1	a0002	160	184	54	40	57	9	23	copy fasta	KRTAP13-4	chr21	30425220	30436026
KRTAP13-4_chr21_30425220_30436026	0/0	a0003	160	4	4	0	0	0	0	copy fasta	KRTAP13-4	chr21	30425220	30436026
KRTAP13-4_chr21_30425220_30436026	0/0	a0004	160	4	0	3	0	1	0	copy fasta	KRTAP13-4	chr21	30425220	30436026
KRTAP13-4_chr21_30425220_30436026	0/0	a0005	160	3	0	2	1	0	0	copy fasta	KRTAP13-4	chr21	30425220	30436026
KRTAP13-4_chr21_30425220_30436026	0/0	a0006	160	2	0	0	0	0	2	copy fasta	KRTAP13-4	chr21	30425220	30436026
KRTAP13-4_chr21_30425220_30436026	0/0	a0007	160	2	2	0	0	0	0	copy fasta	KRTAP13-4	chr21	30425220	30436026
KRTAP13-4_chr21_30425220_30436026	0/0	a0008	160	1	1	0	0	0	0	copy fasta	KRTAP13-4	chr21	30425220	30436026
KRTAP13-4_chr21_30425220_30436026	0/0	a0009	160	1	1	0	0	0	0	copy fasta	KRTAP13-4	chr21	30425220	30436026
KRTAP13-4_chr21_30425220_30436026	0/0	a0010	160	1	0	1	0	0	0	copy fasta	KRTAP13-4	chr21	30425220	30436026
KRTAP13-4_chr21_30425220_30436026	0/0	a0011	160	1	1	0	0	0	0	copy fasta	KRTAP13-4	chr21	30425220	30436026
KRTAP15-1_chr21_30435275_30445869	0/1	a0001	137	216	57	45	75	7	31	copy fasta	KRTAP15-1	chr21	30435275	30445869
KRTAP15-1_chr21_30435275_30445869	1/0	a0002	137	208	37	29	123	7	11	copy fasta	KRTAP15-1	chr21	30435275	30445869
KRTAP15-1_chr21_30435275_30445869	0/0	a0003	137	2	0	0	0	0	2	copy fasta	KRTAP15-1	chr21	30435275	30445869
KRTAP16-1_chr17_41302700_41314309	0/0	a0001	517	245	32	62	112	12	27	copy fasta	KRTAP16-1	chr17	41302700	41314309
KRTAP16-1_chr17_41302700_41314309	0/0	a0002	517	103	20	11	57	2	13	copy fasta	KRTAP16-1	chr17	41302700	41314309
KRTAP16-1_chr17_41302700_41314309	0/0	a0003	517	23	6	3	9	3	2	copy fasta	KRTAP16-1	chr17	41302700	41314309
KRTAP16-1_chr17_41302700_41314309	0/0	a0004	517	23	15	6	1	0	1	copy fasta	KRTAP16-1	chr17	41302700	41314309
KRTAP16-1_chr17_41302700_41314309	0/0	a0005	517	11	10	1	0	0	0	copy fasta	KRTAP16-1	chr17	41302700	41314309
KRTAP16-1_chr17_41302700_41314309	0/0	a0006	517	3	3	0	0	0	0	copy fasta	KRTAP16-1	chr17	41302700	41314309
KRTAP16-1_chr17_41302700_41314309	0/0	a0007	517	2	2	0	0	0	0	copy fasta	KRTAP16-1	chr17	41302700	41314309
KRTAP16-1_chr17_41302700_41314309	0/0	a0008	517	2	0	0	2	0	0	copy fasta	KRTAP16-1	chr17	41302700	41314309
KRTAP16-1_chr17_41302700_41314309	0/0	a0009	517	1	0	1	0	0	0	copy fasta	KRTAP16-1	chr17	41302700	41314309
KRTAP16-1_chr17_41302700_41314309	0/0	a0010	517	1	0	0	1	0	0	copy fasta	KRTAP16-1	chr17	41302700	41314309
KRTAP16-1_chr17_41302700_41314309	0/0	a0011	517	1	0	0	0	0	1	copy fasta	KRTAP16-1	chr17	41302700	41314309
KRTAP16-1_chr17_41302700_41314309	0/0	a0012	517	1	1	0	0	0	0	copy fasta	KRTAP16-1	chr17	41302700	41314309
KRTAP16-1_chr17_41302700_41314309	0/1	a0013	517	1	0	0	0	0	0	copy fasta	KRTAP16-1	chr17	41302700	41314309
KRTAP16-1_chr17_41302700_41314309	0/0	a0014	517	1	0	1	0	0	0	copy fasta	KRTAP16-1	chr17	41302700	41314309
KRTAP16-1_chr17_41302700_41314309	0/0	a0015	517	1	1	0	0	0	0	copy fasta	KRTAP16-1	chr17	41302700	41314309
KRTAP16-1_chr17_41302700_41314309	0/0	a0016	499	1	0	0	0	1	0	copy fasta	KRTAP16-1	chr17	41302700	41314309
KRTAP16-1_chr17_41302700_41314309	0/0	a0017	517	1	0	1	0	0	0	copy fasta	KRTAP16-1	chr17	41302700	41314309
KRTAP17-1_chr17_41309912_41320710	0/1	a0001	105	303	56	71	127	16	32	copy fasta	KRTAP17-1	chr17	41309912	41320710
KRTAP17-1_chr17_41309912_41320710	0/0	a0002	100	90	10	11	55	2	12	copy fasta	KRTAP17-1	chr17	41309912	41320710
KRTAP17-1_chr17_41309912_41320710	0/0	a0003	100	18	18	0	0	0	0	copy fasta	KRTAP17-1	chr17	41309912	41320710
KRTAP17-1_chr17_41309912_41320710	0/0	a0004	105	1	1	0	0	0	0	copy fasta	KRTAP17-1	chr17	41309912	41320710
KRTAP17-1_chr17_41309912_41320710	0/0	a0005	105	1	1	0	0	0	0	copy fasta	KRTAP17-1	chr17	41309912	41320710
KRTAP19-1_chr21_30474706_30485367	1/1	a0001	90	411	76	79	194	16	44	copy fasta	KRTAP19-1	chr21	30474706	30485367
KRTAP19-1_chr21_30474706_30485367	0/0	a0002	90	11	11	0	0	0	0	copy fasta	KRTAP19-1	chr21	30474706	30485367
KRTAP19-1_chr21_30474706_30485367	0/0	a0003	90	1	0	1	0	0	0	copy fasta	KRTAP19-1	chr21	30474706	30485367
KRTAP19-1_chr21_30474706_30485367	0/0	a0004	90	1	1	0	0	0	0	copy fasta	KRTAP19-1	chr21	30474706	30485367
KRTAP19-2_chr21_30482043_30492436	1/1	a0001	52	406	73	75	198	14	44	copy fasta	KRTAP19-2	chr21	30482043	30492436
KRTAP19-2_chr21_30482043_30492436	0/0	a0002	52	10	9	1	0	0	0	copy fasta	KRTAP19-2	chr21	30482043	30492436