Joint Open Genome and Omics Platform (JoGo)

Search Genic Haplotype Catalog

Haplotypefield

Choose the ACTG layer used to define haplotypes.

Genename

e.g. ALDH2, HBB.

Chr

Chromosome number (1-22, X, Y).

GRCh38

1 = haplotype type matches GRCh38; 0 = does not match.

Chm13v2

1 = haplotype type matches CHM13v2; 0 = does not match.

Gpopname

Filter by superpopulation group.

Popname

Filter by population group.

Total

Minimum number of hits (≥).

Start

Start coordinate (GRCh38).

End

End coordinate (GRCh38).

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regionname	grch38/ chm13v2 1/0: The haplotype type is the same as GRCh38 0/1: The haplotype type is the same as CHM13v2 0/0: The haplotype type matches neither GRCh38 nor CHM13v2 1/1: The haplotype type is the same on both GRCh38 and CHM13v2	ahapid	alen	total	AFR	AMR	EAS	EUR	SAS	aseq	genename	chr	start	end
ANKLE1_chr19_17276901_17292646	0/0	a0002	615	142	33	21	63	8	17	copy fasta	ANKLE1	chr19	17276901	17292646
ANKLE1_chr19_17276901_17292646	0/0	a0003	615	33	13	10	0	4	6	copy fasta	ANKLE1	chr19	17276901	17292646
ANKLE1_chr19_17276901_17292646	0/0	a0004	615	13	11	2	0	0	0	copy fasta	ANKLE1	chr19	17276901	17292646
ANKLE1_chr19_17276901_17292646	0/0	a0005	615	7	0	2	4	0	1	copy fasta	ANKLE1	chr19	17276901	17292646
ANKLE1_chr19_17276901_17292646	0/0	a0006	615	6	5	1	0	0	0	copy fasta	ANKLE1	chr19	17276901	17292646
ANKLE1_chr19_17276901_17292646	0/0	a0007	615	5	0	4	0	0	1	copy fasta	ANKLE1	chr19	17276901	17292646
ANKLE1_chr19_17276901_17292646	0/0	a0008	615	3	3	0	0	0	0	copy fasta	ANKLE1	chr19	17276901	17292646
ANKLE1_chr19_17276901_17292646	0/0	a0009	615	3	0	3	0	0	0	copy fasta	ANKLE1	chr19	17276901	17292646
ANKLE1_chr19_17276901_17292646	0/0	a0010	615	2	2	0	0	0	0	copy fasta	ANKLE1	chr19	17276901	17292646
ANKLE1_chr19_17276901_17292646	0/0	a0011	615	2	2	0	0	0	0	copy fasta	ANKLE1	chr19	17276901	17292646
ANKLE1_chr19_17276901_17292646	0/0	a0012	20	1	1	0	0	0	0	copy fasta	ANKLE1	chr19	17276901	17292646
ANKLE1_chr19_17276901_17292646	0/0	a0013	387	1	0	0	1	0	0	copy fasta	ANKLE1	chr19	17276901	17292646
ANKLE1_chr19_17276901_17292646	0/0	a0014	615	1	0	0	1	0	0	copy fasta	ANKLE1	chr19	17276901	17292646
ANKLE1_chr19_17276901_17292646	0/0	a0015	615	1	1	0	0	0	0	copy fasta	ANKLE1	chr19	17276901	17292646
ANKLE1_chr19_17276901_17292646	0/0	a0016	615	1	0	0	1	0	0	copy fasta	ANKLE1	chr19	17276901	17292646
ANKLE1_chr19_17276901_17292646	0/0	a0017	615	1	0	0	1	0	0	copy fasta	ANKLE1	chr19	17276901	17292646
ANKLE1_chr19_17276901_17292646	0/0	a0018	615	1	1	0	0	0	0	copy fasta	ANKLE1	chr19	17276901	17292646
ANKLE1_chr19_17276901_17292646	0/0	a0019	615	1	1	0	0	0	0	copy fasta	ANKLE1	chr19	17276901	17292646
ANKLE1_chr19_17276901_17292646	0/0	a0020	615	1	1	0	0	0	0	copy fasta	ANKLE1	chr19	17276901	17292646
ANKLE1_chr19_17276901_17292646	0/0	a0021	615	1	1	0	0	0	0	copy fasta	ANKLE1	chr19	17276901	17292646
ANKLE1_chr19_17276901_17292646	0/0	a0022	615	1	0	1	0	0	0	copy fasta	ANKLE1	chr19	17276901	17292646
ANKLE1_chr19_17276901_17292646	0/0	a0023	615	1	0	0	1	0	0	copy fasta	ANKLE1	chr19	17276901	17292646
ANKLE1_chr19_17276901_17292646	0/0	a0024	615	1	0	1	0	0	0	copy fasta	ANKLE1	chr19	17276901	17292646
ANKLE1_chr19_17276901_17292646	0/0	a0025	615	1	1	0	0	0	0	copy fasta	ANKLE1	chr19	17276901	17292646
ANKLE1_chr19_17276901_17292646	0/0	a0026	615	1	1	0	0	0	0	copy fasta	ANKLE1	chr19	17276901	17292646
ANKLE2_chr12_132720503_132766832	1/0	a0001	938	219	54	33	98	6	27	copy fasta	ANKLE2	chr12	132720503	132766832
ANKLE2_chr12_132720503_132766832	0/1	a0002	938	64	7	17	21	4	14	copy fasta	ANKLE2	chr12	132720503	132766832
ANKLE2_chr12_132720503_132766832	0/0	a0003	938	21	13	7	0	1	0	copy fasta	ANKLE2	chr12	132720503	132766832
ANKLE2_chr12_132720503_132766832	0/0	a0004	938	18	0	4	11	0	3	copy fasta	ANKLE2	chr12	132720503	132766832
ANKLE2_chr12_132720503_132766832	0/0	a0005	938	12	0	2	6	0	4	copy fasta	ANKLE2	chr12	132720503	132766832
ANKLE2_chr12_132720503_132766832	0/0	a0006	938	3	3	0	0	0	0	copy fasta	ANKLE2	chr12	132720503	132766832
ANKLE2_chr12_132720503_132766832	0/0	a0007	938	2	1	0	1	0	0	copy fasta	ANKLE2	chr12	132720503	132766832
ANKLE2_chr12_132720503_132766832	0/0	a0008	938	2	0	0	2	0	0	copy fasta	ANKLE2	chr12	132720503	132766832
ANKLE2_chr12_132720503_132766832	0/0	a0009	938	2	2	0	0	0	0	copy fasta	ANKLE2	chr12	132720503	132766832
ANKLE2_chr12_132720503_132766832	0/0	a0010	938	1	0	0	1	0	0	copy fasta	ANKLE2	chr12	132720503	132766832
ANKLE2_chr12_132720503_132766832	0/0	a0011	938	1	0	0	0	1	0	copy fasta	ANKLE2	chr12	132720503	132766832
ANKLE2_chr12_132720503_132766832	0/0	a0012	938	1	0	0	1	0	0	copy fasta	ANKLE2	chr12	132720503	132766832
ANKLE2_chr12_132720503_132766832	0/0	a0013	938	1	0	1	0	0	0	copy fasta	ANKLE2	chr12	132720503	132766832
ANKLE2_chr12_132720503_132766832	0/0	a0014	938	1	0	0	1	0	0	copy fasta	ANKLE2	chr12	132720503	132766832
ANKLE2_chr12_132720503_132766832	0/0	a0015	938	1	0	1	0	0	0	copy fasta	ANKLE2	chr12	132720503	132766832
ANKLE2_chr12_132720503_132766832	0/0	a0016	938	1	0	1	0	0	0	copy fasta	ANKLE2	chr12	132720503	132766832
ANKMY1_chr2_240474422_240562988	1/1	a0001	1030	154	40	29	48	7	28	copy fasta	ANKMY1	chr2	240474422	240562988
ANKMY1_chr2_240474422_240562988	0/0	a0002	1030	55	13	20	21	1	0	copy fasta	ANKMY1	chr2	240474422	240562988
ANKMY1_chr2_240474422_240562988	0/0	a0003	1030	28	14	9	2	3	0	copy fasta	ANKMY1	chr2	240474422	240562988
ANKMY1_chr2_240474422_240562988	0/0	a0004	1030	26	8	3	10	2	3	copy fasta	ANKMY1	chr2	240474422	240562988
ANKMY1_chr2_240474422_240562988	0/0	a0005	1030	16	2	4	6	0	4	copy fasta	ANKMY1	chr2	240474422	240562988
ANKMY1_chr2_240474422_240562988	0/0	a0006	1030	13	8	3	0	2	0	copy fasta	ANKMY1	chr2	240474422	240562988
ANKMY1_chr2_240474422_240562988	0/0	a0007	1030	5	0	1	3	0	1	copy fasta	ANKMY1	chr2	240474422	240562988
ANKMY1_chr2_240474422_240562988	0/0	a0008	1030	2	0	2	0	0	0	copy fasta	ANKMY1	chr2	240474422	240562988
ANKMY1_chr2_240474422_240562988	0/0	a0009	1030	2	0	0	2	0	0	copy fasta	ANKMY1	chr2	240474422	240562988