JoGo: Joint Open Genome and Omics Platform

Search Genic Haplotype Catalog

Haplotypefield

Choose the ACTG layer used to define haplotypes.

Genename

e.g. ALDH2, HBB.

Chr

Chromosome number (1-22, X, Y).

GRCh38

1 = haplotype type matches GRCh38; 0 = does not match.

Chm13v2

1 = haplotype type matches CHM13v2; 0 = does not match.

Gpopname

Filter by superpopulation group.

Popname

Filter by population group.

Total

Minimum number of hits (≥).

Start

Start coordinate (GRCh38).

End

End coordinate (GRCh38).

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regionname	grch38/ chm13v2 1/0: The haplotype type is the same as GRCh38 0/1: The haplotype type is the same as CHM13v2 0/0: The haplotype type matches neither GRCh38 nor CHM13v2 1/1: The haplotype type is the same on both GRCh38 and CHM13v2	ahapid	alen	total	AFR	AMR	EAS	EUR	SAS	aseq	genename	chr	start	end
KRTAP5-9_chr11_71543420_71554608	1/1	a0001	169	334	56	61	163	14	38	copy fasta	KRTAP5-9	chr11	71543420	71554608
KRTAP5-9_chr11_71543420_71554608	0/0	a0002	169	58	24	12	20	1	1	copy fasta	KRTAP5-9	chr11	71543420	71554608
KRTAP5-9_chr11_71543420_71554608	0/0	a0003	169	12	11	1	0	0	0	copy fasta	KRTAP5-9	chr11	71543420	71554608
KRTAP5-9_chr11_71543420_71554608	0/0	a0004	169	6	2	0	3	0	1	copy fasta	KRTAP5-9	chr11	71543420	71554608
KRTAP5-9_chr11_71543420_71554608	0/0	a0005	121	5	5	0	0	0	0	copy fasta	KRTAP5-9	chr11	71543420	71554608
KRTAP5-9_chr11_71543420_71554608	0/0	a0006	169	4	0	3	0	1	0	copy fasta	KRTAP5-9	chr11	71543420	71554608
KRTAP5-9_chr11_71543420_71554608	0/0	a0007	169	2	0	0	0	0	2	copy fasta	KRTAP5-9	chr11	71543420	71554608
KRTAP5-9_chr11_71543420_71554608	0/0	a0008	169	1	0	1	0	0	0	copy fasta	KRTAP5-9	chr11	71543420	71554608
KRTAP6-1_chr21_30608431_30618930	1/1	a0001	71	366	81	68	161	16	38	copy fasta	KRTAP6-1	chr21	30608431	30618930
KRTAP6-1_chr21_30608431_30618930	0/0	a0002	71	7	0	0	4	0	3	copy fasta	KRTAP6-1	chr21	30608431	30618930
KRTAP6-1_chr21_30608431_30618930	0/0	a0003	71	3	3	0	0	0	0	copy fasta	KRTAP6-1	chr21	30608431	30618930
KRTAP6-1_chr21_30608431_30618930	0/0	a0004	71	2	2	0	0	0	0	copy fasta	KRTAP6-1	chr21	30608431	30618930
KRTAP6-1_chr21_30608431_30618930	0/0	a0005	64	1	0	0	0	0	1	copy fasta	KRTAP6-1	chr21	30608431	30618930
KRTAP6-1_chr21_30608431_30618930	0/0	a0006	78	1	0	0	1	0	0	copy fasta	KRTAP6-1	chr21	30608431	30618930
KRTAP6-2_chr21_30593590_30603902	0/0	a0000	0	9	9	0	0	0	0	copy fasta	KRTAP6-2	chr21	30593590	30603902
KRTAP6-2_chr21_30593590_30603902	1/1	a0001	62	428	83	74	208	16	45	copy fasta	KRTAP6-2	chr21	30593590	30603902
KRTAP6-2_chr21_30593590_30603902	0/0	a0002	62	3	0	0	0	0	3	copy fasta	KRTAP6-2	chr21	30593590	30603902
KRTAP6-2_chr21_30593590_30603902	0/0	a0003	62	1	0	0	1	0	0	copy fasta	KRTAP6-2	chr21	30593590	30603902
KRTAP6-2_chr21_30593590_30603902	0/0	a0004	62	1	0	0	1	0	0	copy fasta	KRTAP6-2	chr21	30593590	30603902
KRTAP6-3_chr21_30587440_30598075	1/0	a0001	110	190	43	17	107	8	14	copy fasta	KRTAP6-3	chr21	30587440	30598075
KRTAP6-3_chr21_30587440_30598075	0/1	a0002	110	180	41	40	57	10	31	copy fasta	KRTAP6-3	chr21	30587440	30598075
KRTAP6-3_chr21_30587440_30598075	0/0	a0003	110	52	1	10	41	0	0	copy fasta	KRTAP6-3	chr21	30587440	30598075
KRTAP6-3_chr21_30587440_30598075	0/0	a0004	110	4	0	0	4	0	0	copy fasta	KRTAP6-3	chr21	30587440	30598075
KRTAP6-3_chr21_30587440_30598075	0/0	a0005	110	3	0	0	0	0	3	copy fasta	KRTAP6-3	chr21	30587440	30598075
KRTAP6-3_chr21_30587440_30598075	0/0	a0006	110	2	2	0	0	0	0	copy fasta	KRTAP6-3	chr21	30587440	30598075
KRTAP6-3_chr21_30587440_30598075	0/0	a0007	110	1	0	1	0	0	0	copy fasta	KRTAP6-3	chr21	30587440	30598075
KRTAP6-3_chr21_30587440_30598075	0/0	a0008	103	1	0	0	1	0	0	copy fasta	KRTAP6-3	chr21	30587440	30598075
KRTAP6-3_chr21_30587440_30598075	0/0	a0009	110	1	1	0	0	0	0	copy fasta	KRTAP6-3	chr21	30587440	30598075
KRTAP7-1_chr21_30824039_30834759	1/0	a0001	87	225	54	31	111	9	19	copy fasta	KRTAP7-1	chr21	30824039	30834759
KRTAP7-1_chr21_30824039_30834759	0/1	a0002	87	196	38	39	91	2	25	copy fasta	KRTAP7-1	chr21	30824039	30834759
KRTAP7-1_chr21_30824039_30834759	0/0	a0003	87	5	0	2	0	3	0	copy fasta	KRTAP7-1	chr21	30824039	30834759
KRTAP8-1_chr21_30807697_30818274	1/1	a0001	63	408	92	68	186	16	44	copy fasta	KRTAP8-1	chr21	30807697	30818274
KRTAP9-1_chr17_41184887_41195639	0/1	a0001	259	386	89	69	188	10	29	copy fasta	KRTAP9-1	chr17	41184887	41195639
KRTAP9-1_chr17_41184887_41195639	0/0	a0002	149	43	1	10	14	1	17	copy fasta	KRTAP9-1	chr17	41184887	41195639
KRTAP9-1_chr17_41184887_41195639	1/0	a0003	250	21	1	2	12	3	2	copy fasta	KRTAP9-1	chr17	41184887	41195639
KRTAP9-1_chr17_41184887_41195639	0/0	a0004	259	2	2	0	0	0	0	copy fasta	KRTAP9-1	chr17	41184887	41195639
KRTAP9-1_chr17_41184887_41195639	0/0	a0005	254	2	0	0	2	0	0	copy fasta	KRTAP9-1	chr17	41184887	41195639
KRTAP9-1_chr17_41184887_41195639	0/0	a0006	259	2	2	0	0	0	0	copy fasta	KRTAP9-1	chr17	41184887	41195639
KRTAP9-1_chr17_41184887_41195639	0/0	a0007	264	1	1	0	0	0	0	copy fasta	KRTAP9-1	chr17	41184887	41195639
KRTAP9-1_chr17_41184887_41195639	0/0	a0008	259	1	1	0	0	0	0	copy fasta	KRTAP9-1	chr17	41184887	41195639
KRTAP9-1_chr17_41184887_41195639	0/0	a0009	229	1	1	0	0	0	0	copy fasta	KRTAP9-1	chr17	41184887	41195639
KRTAP9-1_chr17_41184887_41195639	0/0	a0010	259	1	0	1	0	0	0	copy fasta	KRTAP9-1	chr17	41184887	41195639
KRTAP9-2_chr17_41221648_41232652	0/0	a0000	0	11	11	0	0	0	0	copy fasta	KRTAP9-2	chr17	41221648	41232652
KRTAP9-2_chr17_41221648_41232652	0/1	a0001	174	285	55	61	127	9	32	copy fasta	KRTAP9-2	chr17	41221648	41232652
KRTAP9-2_chr17_41221648_41232652	0/0	a0002	174	113	12	13	69	6	13	copy fasta	KRTAP9-2	chr17	41221648	41232652
KRTAP9-2_chr17_41221648_41232652	0/0	a0003	164	10	0	0	10	0	0	copy fasta	KRTAP9-2	chr17	41221648	41232652
KRTAP9-2_chr17_41221648_41232652	0/0	a0004	170	6	0	5	0	1	0	copy fasta	KRTAP9-2	chr17	41221648	41232652
KRTAP9-2_chr17_41221648_41232652	0/0	a0005	174	4	3	1	0	0	0	copy fasta	KRTAP9-2	chr17	41221648	41232652
KRTAP9-2_chr17_41221648_41232652	0/0	a0006	174	3	0	0	3	0	0	copy fasta	KRTAP9-2	chr17	41221648	41232652
KRTAP9-2_chr17_41221648_41232652	0/0	a0007	174	1	1	0	0	0	0	copy fasta	KRTAP9-2	chr17	41221648	41232652