JoGo: Joint Open Genome and Omics Platform

Search Genic Haplotype Catalog

Haplotypefield

Choose the ACTG layer used to define haplotypes.

Genename

e.g. ALDH2, HBB.

Chr

Chromosome number (1-22, X, Y).

GRCh38

1 = haplotype type matches GRCh38; 0 = does not match.

Chm13v2

1 = haplotype type matches CHM13v2; 0 = does not match.

Gpopname

Filter by superpopulation group.

Popname

Filter by population group.

Total

Minimum number of hits (≥).

Start

Start coordinate (GRCh38).

End

End coordinate (GRCh38).

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regionname	grch38/ chm13v2 1/0: The haplotype type is the same as GRCh38 0/1: The haplotype type is the same as CHM13v2 0/0: The haplotype type matches neither GRCh38 nor CHM13v2 1/1: The haplotype type is the same on both GRCh38 and CHM13v2	ahapid	alen	total	AFR	AMR	EAS	EUR	SAS	aseq	genename	chr	start	end
KSR1_chr17_27451448_27631435	1/1	a0001	928	183	61	45	45	10	20	copy fasta	KSR1	chr17	27451448	27631435
KSR1_chr17_27451448_27631435	0/0	a0002	928	55	13	17	14	4	7	copy fasta	KSR1	chr17	27451448	27631435
KSR1_chr17_27451448_27631435	0/0	a0003	928	5	5	0	0	0	0	copy fasta	KSR1	chr17	27451448	27631435
KSR1_chr17_27451448_27631435	0/0	a0004	928	1	0	0	0	0	1	copy fasta	KSR1	chr17	27451448	27631435
KSR1_chr17_27451448_27631435	0/0	a0005	928	1	1	0	0	0	0	copy fasta	KSR1	chr17	27451448	27631435
KSR1_chr17_27451448_27631435	0/0	a0006	928	1	0	0	1	0	0	copy fasta	KSR1	chr17	27451448	27631435
KSR2_chr12_117448012_117973990	1/1	a0001	950	191	82	39	52	4	12	copy fasta	KSR2	chr12	117448012	117973990
KSR2_chr12_117448012_117973990	0/0	a0002	950	2	0	0	0	0	2	copy fasta	KSR2	chr12	117448012	117973990
KSR2_chr12_117448012_117973990	0/0	a0003	950	1	0	0	1	0	0	copy fasta	KSR2	chr12	117448012	117973990
KSR2_chr12_117448012_117973990	0/0	a0004	950	1	0	1	0	0	0	copy fasta	KSR2	chr12	117448012	117973990
KSR2_chr12_117448012_117973990	0/0	a0005	950	1	0	0	1	0	0	copy fasta	KSR2	chr12	117448012	117973990
KTI12_chr1_52027103_52038810	1/0	a0001	354	258	80	41	101	9	26	copy fasta	KTI12	chr1	52027103	52038810
KTI12_chr1_52027103_52038810	0/1	a0002	354	39	5	3	29	0	1	copy fasta	KTI12	chr1	52027103	52038810
KTI12_chr1_52027103_52038810	0/0	a0003	345	11	2	1	2	1	5	copy fasta	KTI12	chr1	52027103	52038810
KTI12_chr1_52027103_52038810	0/0	a0004	354	2	2	0	0	0	0	copy fasta	KTI12	chr1	52027103	52038810
KTI12_chr1_52027103_52038810	0/0	a0005	354	2	2	0	0	0	0	copy fasta	KTI12	chr1	52027103	52038810
KTI12_chr1_52027103_52038810	0/0	a0006	354	1	0	0	0	0	1	copy fasta	KTI12	chr1	52027103	52038810
KTI12_chr1_52027103_52038810	0/0	a0007	354	1	0	1	0	0	0	copy fasta	KTI12	chr1	52027103	52038810
KTI12_chr1_52027103_52038810	0/0	a0008	354	1	0	0	1	0	0	copy fasta	KTI12	chr1	52027103	52038810
KTI12_chr1_52027103_52038810	0/0	a0009	354	1	0	0	1	0	0	copy fasta	KTI12	chr1	52027103	52038810
KTI12_chr1_52027103_52038810	0/0	a0010	354	1	1	0	0	0	0	copy fasta	KTI12	chr1	52027103	52038810
KTI12_chr1_52027103_52038810	0/0	a0011	354	1	0	0	0	0	1	copy fasta	KTI12	chr1	52027103	52038810
KTN1_chr14_55575207_55689579	1/1	a0001	1357	294	56	62	135	10	29	copy fasta	KTN1	chr14	55575207	55689579
KTN1_chr14_55575207_55689579	0/0	a0002	1357	5	3	0	0	0	2	copy fasta	KTN1	chr14	55575207	55689579
KTN1_chr14_55575207_55689579	0/0	a0003	1357	2	1	1	0	0	0	copy fasta	KTN1	chr14	55575207	55689579
KTN1_chr14_55575207_55689579	0/0	a0004	1357	2	0	0	0	0	2	copy fasta	KTN1	chr14	55575207	55689579
KTN1_chr14_55575207_55689579	0/0	a0005	1357	2	0	0	2	0	0	copy fasta	KTN1	chr14	55575207	55689579
KTN1_chr14_55575207_55689579	0/0	a0006	1357	2	2	0	0	0	0	copy fasta	KTN1	chr14	55575207	55689579
KTN1_chr14_55575207_55689579	0/0	a0007	1357	1	0	0	0	0	1	copy fasta	KTN1	chr14	55575207	55689579
KTN1_chr14_55575207_55689579	0/0	a0008	1357	1	0	0	1	0	0	copy fasta	KTN1	chr14	55575207	55689579
KTN1_chr14_55575207_55689579	0/0	a0009	1357	1	1	0	0	0	0	copy fasta	KTN1	chr14	55575207	55689579
KTN1_chr14_55575207_55689579	0/0	a0010	1357	1	1	0	0	0	0	copy fasta	KTN1	chr14	55575207	55689579
KTN1_chr14_55575207_55689579	0/0	a0011	1357	1	1	0	0	0	0	copy fasta	KTN1	chr14	55575207	55689579
KTN1_chr14_55575207_55689579	0/0	a0012	1357	1	1	0	0	0	0	copy fasta	KTN1	chr14	55575207	55689579
KTN1_chr14_55575207_55689579	0/0	a0013	1357	1	0	1	0	0	0	copy fasta	KTN1	chr14	55575207	55689579
KXD1_chr19_18552870_18574378	1/0	a0001	176	214	76	35	74	6	22	copy fasta	KXD1	chr19	18552870	18574378
KXD1_chr19_18552870_18574378	0/1	a0002	176	168	6	40	95	8	18	copy fasta	KXD1	chr19	18552870	18574378
KXD1_chr19_18552870_18574378	0/0	a0003	176	7	7	0	0	0	0	copy fasta	KXD1	chr19	18552870	18574378
KXD1_chr19_18552870_18574378	0/0	a0004	176	3	3	0	0	0	0	copy fasta	KXD1	chr19	18552870	18574378
KXD1_chr19_18552870_18574378	0/0	a0005	176	2	2	0	0	0	0	copy fasta	KXD1	chr19	18552870	18574378
KXD1_chr19_18552870_18574378	0/0	a0006	176	1	0	1	0	0	0	copy fasta	KXD1	chr19	18552870	18574378
KXD1_chr19_18552870_18574378	0/0	a0007	176	1	0	0	1	0	0	copy fasta	KXD1	chr19	18552870	18574378
KYAT1_chr9_128827942_128886950	1/1	a0001	422	320	75	63	134	8	38	copy fasta	KYAT1	chr9	128827942	128886950
KYAT1_chr9_128827942_128886950	0/0	a0002	422	2	0	0	2	0	0	copy fasta	KYAT1	chr9	128827942	128886950
KYAT1_chr9_128827942_128886950	0/0	a0003	422	1	0	0	0	0	1	copy fasta	KYAT1	chr9	128827942	128886950
KYAT1_chr9_128827942_128886950	0/0	a0004	422	1	1	0	0	0	0	copy fasta	KYAT1	chr9	128827942	128886950
KYAT1_chr9_128827942_128886950	0/0	a0005	422	1	0	0	0	0	1	copy fasta	KYAT1	chr9	128827942	128886950
KYAT1_chr9_128827942_128886950	0/0	a0006	422	1	0	1	0	0	0	copy fasta	KYAT1	chr9	128827942	128886950
KYAT3_chr1_88930779_88997629	1/1	a0001	454	293	78	59	118	18	18	copy fasta	KYAT3	chr1	88930779	88997629
KYAT3_chr1_88930779_88997629	0/0	a0002	454	9	9	0	0	0	0	copy fasta	KYAT3	chr1	88930779	88997629