Joint Open Genome and Omics Platform (JoGo)

Search Genic Haplotype Catalog

Haplotypefield

Choose the ACTG layer used to define haplotypes.

Genename

e.g. ALDH2, HBB.

Chr

Chromosome number (1-22, X, Y).

GRCh38

1 = haplotype type matches GRCh38; 0 = does not match.

Chm13v2

1 = haplotype type matches CHM13v2; 0 = does not match.

Gpopname

Filter by superpopulation group.

Popname

Filter by population group.

Total

Minimum number of hits (≥).

Start

Start coordinate (GRCh38).

End

End coordinate (GRCh38).

Sort By

Choose a field to sort by.

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regionname	grch38/ chm13v2 1/0: The haplotype type is the same as GRCh38 0/1: The haplotype type is the same as CHM13v2 0/0: The haplotype type matches neither GRCh38 nor CHM13v2 1/1: The haplotype type is the same on both GRCh38 and CHM13v2	ahapid	alen	total	AFR	AMR	EAS	EUR	SAS	aseq	genename	chr	start	end
ANKMY1_chr2_240474422_240562988	0/0	a0010	1030	2	0	2	0	0	0	copy fasta	ANKMY1	chr2	240474422	240562988
ANKMY1_chr2_240474422_240562988	0/0	a0011	1030	2	0	0	2	0	0	copy fasta	ANKMY1	chr2	240474422	240562988
ANKMY1_chr2_240474422_240562988	0/0	a0012	1030	2	2	0	0	0	0	copy fasta	ANKMY1	chr2	240474422	240562988
ANKMY1_chr2_240474422_240562988	0/0	a0013	1030	2	2	0	0	0	0	copy fasta	ANKMY1	chr2	240474422	240562988
ANKMY1_chr2_240474422_240562988	0/0	a0014	1030	2	0	0	0	1	1	copy fasta	ANKMY1	chr2	240474422	240562988
ANKMY1_chr2_240474422_240562988	0/0	a0015	1030	1	0	1	0	0	0	copy fasta	ANKMY1	chr2	240474422	240562988
ANKMY1_chr2_240474422_240562988	0/0	a0016	187	1	0	0	1	0	0	copy fasta	ANKMY1	chr2	240474422	240562988
ANKMY1_chr2_240474422_240562988	0/0	a0017	1030	1	1	0	0	0	0	copy fasta	ANKMY1	chr2	240474422	240562988
ANKMY1_chr2_240474422_240562988	0/0	a0018	1030	1	0	0	1	0	0	copy fasta	ANKMY1	chr2	240474422	240562988
ANKMY1_chr2_240474422_240562988	0/0	a0019	1030	1	0	0	0	0	1	copy fasta	ANKMY1	chr2	240474422	240562988
ANKMY1_chr2_240474422_240562988	0/0	a0020	1030	1	1	0	0	0	0	copy fasta	ANKMY1	chr2	240474422	240562988
ANKMY1_chr2_240474422_240562988	0/0	a0021	1030	1	1	0	0	0	0	copy fasta	ANKMY1	chr2	240474422	240562988
ANKMY1_chr2_240474422_240562988	0/0	a0022	1030	1	0	0	1	0	0	copy fasta	ANKMY1	chr2	240474422	240562988
ANKMY1_chr2_240474422_240562988	0/0	a0023	1030	1	0	0	1	0	0	copy fasta	ANKMY1	chr2	240474422	240562988
ANKMY2_chr7_16594779_16650754	1/1	a0001	441	368	87	70	153	14	42	copy fasta	ANKMY2	chr7	16594779	16650754
ANKMY2_chr7_16594779_16650754	0/0	a0002	441	27	2	1	24	0	0	copy fasta	ANKMY2	chr7	16594779	16650754
ANKMY2_chr7_16594779_16650754	0/0	a0003	441	2	2	0	0	0	0	copy fasta	ANKMY2	chr7	16594779	16650754
ANKMY2_chr7_16594779_16650754	0/0	a0004	441	1	1	0	0	0	0	copy fasta	ANKMY2	chr7	16594779	16650754
ANKMY2_chr7_16594779_16650754	0/0	a0005	441	1	0	1	0	0	0	copy fasta	ANKMY2	chr7	16594779	16650754
ANKMY2_chr7_16594779_16650754	0/0	a0006	441	1	1	0	0	0	0	copy fasta	ANKMY2	chr7	16594779	16650754
ANKMY2_chr7_16594779_16650754	0/0	a0007	441	1	1	0	0	0	0	copy fasta	ANKMY2	chr7	16594779	16650754
ANKMY2_chr7_16594779_16650754	0/0	a0008	441	1	0	0	1	0	0	copy fasta	ANKMY2	chr7	16594779	16650754
ANKRA2_chr5_73547190_73570639	1/1	a0001	313	392	92	80	160	16	42	copy fasta	ANKRA2	chr5	73547190	73570639
ANKRD10_chr13_110873540_110920069	1/1	a0001	420	320	87	78	98	16	39	copy fasta	ANKRD10	chr13	110873540	110920069
ANKRD10_chr13_110873540_110920069	0/0	a0002	420	41	3	0	30	0	8	copy fasta	ANKRD10	chr13	110873540	110920069
ANKRD10_chr13_110873540_110920069	0/0	a0003	420	1	0	0	0	0	1	copy fasta	ANKRD10	chr13	110873540	110920069
ANKRD11_chr16_89262630_89495561	0/0	a0001	2663	119	46	24	24	9	16	copy fasta	ANKRD11	chr16	89262630	89495561
ANKRD11_chr16_89262630_89495561	0/1	a0002	2663	63	12	9	34	2	5	copy fasta	ANKRD11	chr16	89262630	89495561
ANKRD11_chr16_89262630_89495561	1/0	a0003	2663	45	8	16	10	2	8	copy fasta	ANKRD11	chr16	89262630	89495561
ANKRD11_chr16_89262630_89495561	0/0	a0004	2663	32	0	6	21	0	5	copy fasta	ANKRD11	chr16	89262630	89495561
ANKRD11_chr16_89262630_89495561	0/0	a0005	2663	10	0	0	9	1	0	copy fasta	ANKRD11	chr16	89262630	89495561
ANKRD11_chr16_89262630_89495561	0/0	a0006	2663	4	0	0	1	0	3	copy fasta	ANKRD11	chr16	89262630	89495561
ANKRD11_chr16_89262630_89495561	0/0	a0007	2663	3	0	3	0	0	0	copy fasta	ANKRD11	chr16	89262630	89495561
ANKRD11_chr16_89262630_89495561	0/0	a0008	2663	3	3	0	0	0	0	copy fasta	ANKRD11	chr16	89262630	89495561
ANKRD11_chr16_89262630_89495561	0/0	a0009	2663	2	0	0	2	0	0	copy fasta	ANKRD11	chr16	89262630	89495561
ANKRD11_chr16_89262630_89495561	0/0	a0010	2663	2	2	0	0	0	0	copy fasta	ANKRD11	chr16	89262630	89495561
ANKRD11_chr16_89262630_89495561	0/0	a0011	2663	2	2	0	0	0	0	copy fasta	ANKRD11	chr16	89262630	89495561
ANKRD11_chr16_89262630_89495561	0/0	a0012	2663	2	2	0	0	0	0	copy fasta	ANKRD11	chr16	89262630	89495561
ANKRD11_chr16_89262630_89495561	0/0	a0013	2663	2	2	0	0	0	0	copy fasta	ANKRD11	chr16	89262630	89495561
ANKRD11_chr16_89262630_89495561	0/0	a0014	2663	1	0	0	0	1	0	copy fasta	ANKRD11	chr16	89262630	89495561
ANKRD11_chr16_89262630_89495561	0/0	a0015	2663	1	0	0	1	0	0	copy fasta	ANKRD11	chr16	89262630	89495561
ANKRD11_chr16_89262630_89495561	0/0	a0016	2663	1	0	0	1	0	0	copy fasta	ANKRD11	chr16	89262630	89495561
ANKRD11_chr16_89262630_89495561	0/0	a0017	2663	1	0	0	1	0	0	copy fasta	ANKRD11	chr16	89262630	89495561
ANKRD11_chr16_89262630_89495561	0/0	a0018	2663	1	1	0	0	0	0	copy fasta	ANKRD11	chr16	89262630	89495561
ANKRD11_chr16_89262630_89495561	0/0	a0019	2663	1	0	0	1	0	0	copy fasta	ANKRD11	chr16	89262630	89495561
ANKRD11_chr16_89262630_89495561	0/0	a0020	2663	1	0	0	1	0	0	copy fasta	ANKRD11	chr16	89262630	89495561
ANKRD11_chr16_89262630_89495561	0/0	a0021	2663	1	0	0	0	0	1	copy fasta	ANKRD11	chr16	89262630	89495561
ANKRD11_chr16_89262630_89495561	0/0	a0022	2663	1	0	0	1	0	0	copy fasta	ANKRD11	chr16	89262630	89495561
ANKRD11_chr16_89262630_89495561	0/0	a0023	2663	1	1	0	0	0	0	copy fasta	ANKRD11	chr16	89262630	89495561
ANKRD11_chr16_89262630_89495561	0/0	a0024	2663	1	0	0	1	0	0	copy fasta	ANKRD11	chr16	89262630	89495561