JoGo: Joint Open Genome and Omics Platform

Search Genic Haplotype Catalog

Haplotypefield

Choose the ACTG layer used to define haplotypes.

Genename

e.g. ALDH2, HBB.

Chr

Chromosome number (1-22, X, Y).

GRCh38

1 = haplotype type matches GRCh38; 0 = does not match.

Chm13v2

1 = haplotype type matches CHM13v2; 0 = does not match.

Gpopname

Filter by superpopulation group.

Popname

Filter by population group.

Total

Minimum number of hits (≥).

Start

Start coordinate (GRCh38).

End

End coordinate (GRCh38).

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regionname	grch38/ chm13v2 1/0: The haplotype type is the same as GRCh38 0/1: The haplotype type is the same as CHM13v2 0/0: The haplotype type matches neither GRCh38 nor CHM13v2 1/1: The haplotype type is the same on both GRCh38 and CHM13v2	ahapid	alen	total	AFR	AMR	EAS	EUR	SAS	aseq	genename	chr	start	end
L3MBTL4_chr18_5949717_6419911	0/0	a0005	614	1	1	0	0	0	0	copy fasta	L3MBTL4	chr18	5949717	6419911
LACC1_chr13_43874904_43898932	1/0	a0001	430	301	64	47	153	10	26	copy fasta	LACC1	chr13	43874904	43898932
LACC1_chr13_43874904_43898932	0/1	a0002	430	154	27	27	75	2	22	copy fasta	LACC1	chr13	43874904	43898932
LACC1_chr13_43874904_43898932	0/0	a0003	430	1	1	0	0	0	0	copy fasta	LACC1	chr13	43874904	43898932
LACRT_chr12_54625811_54639895	1/1	a0001	138	414	96	76	180	18	42	copy fasta	LACRT	chr12	54625811	54639895
LACTB2_chr8_70632266_70674185	1/0	a0001	288	351	88	62	152	12	36	copy fasta	LACTB2	chr8	70632266	70674185
LACTB2_chr8_70632266_70674185	0/1	a0002	288	1	0	0	0	0	0	copy fasta	LACTB2	chr8	70632266	70674185
LACTBL1_chr1_22948043_22977866	1/1	a0001	579	241	58	41	104	10	26	copy fasta	LACTBL1	chr1	22948043	22977866
LACTBL1_chr1_22948043_22977866	0/0	a0002	579	137	12	20	88	5	12	copy fasta	LACTBL1	chr1	22948043	22977866
LACTBL1_chr1_22948043_22977866	0/0	a0003	579	27	1	10	11	0	5	copy fasta	LACTBL1	chr1	22948043	22977866
LACTBL1_chr1_22948043_22977866	0/0	a0004	579	8	7	0	1	0	0	copy fasta	LACTBL1	chr1	22948043	22977866
LACTBL1_chr1_22948043_22977866	0/0	a0005	579	6	5	1	0	0	0	copy fasta	LACTBL1	chr1	22948043	22977866
LACTBL1_chr1_22948043_22977866	0/0	a0006	579	3	0	0	3	0	0	copy fasta	LACTBL1	chr1	22948043	22977866
LACTBL1_chr1_22948043_22977866	0/0	a0007	579	3	2	1	0	0	0	copy fasta	LACTBL1	chr1	22948043	22977866
LACTBL1_chr1_22948043_22977866	0/0	a0008	578	3	3	0	0	0	0	copy fasta	LACTBL1	chr1	22948043	22977866
LACTBL1_chr1_22948043_22977866	0/0	a0009	261	2	0	0	0	1	1	copy fasta	LACTBL1	chr1	22948043	22977866
LACTBL1_chr1_22948043_22977866	0/0	a0010	579	2	0	0	0	2	0	copy fasta	LACTBL1	chr1	22948043	22977866
LACTBL1_chr1_22948043_22977866	0/0	a0011	579	2	0	2	0	0	0	copy fasta	LACTBL1	chr1	22948043	22977866
LACTBL1_chr1_22948043_22977866	0/0	a0012	579	2	0	2	0	0	0	copy fasta	LACTBL1	chr1	22948043	22977866
LACTBL1_chr1_22948043_22977866	0/0	a0013	261	2	0	2	0	0	0	copy fasta	LACTBL1	chr1	22948043	22977866
LACTBL1_chr1_22948043_22977866	0/0	a0014	579	1	0	0	1	0	0	copy fasta	LACTBL1	chr1	22948043	22977866
LACTBL1_chr1_22948043_22977866	0/0	a0015	579	1	0	0	1	0	0	copy fasta	LACTBL1	chr1	22948043	22977866
LACTBL1_chr1_22948043_22977866	0/0	a0016	579	1	0	0	1	0	0	copy fasta	LACTBL1	chr1	22948043	22977866
LACTBL1_chr1_22948043_22977866	0/0	a0017	579	1	0	0	1	0	0	copy fasta	LACTBL1	chr1	22948043	22977866
LACTBL1_chr1_22948043_22977866	0/0	a0018	579	1	0	0	1	0	0	copy fasta	LACTBL1	chr1	22948043	22977866
LACTBL1_chr1_22948043_22977866	0/0	a0019	579	1	1	0	0	0	0	copy fasta	LACTBL1	chr1	22948043	22977866
LACTBL1_chr1_22948043_22977866	0/0	a0020	579	1	0	1	0	0	0	copy fasta	LACTBL1	chr1	22948043	22977866
LACTBL1_chr1_22948043_22977866	0/0	a0021	579	1	0	0	1	0	0	copy fasta	LACTBL1	chr1	22948043	22977866
LACTBL1_chr1_22948043_22977866	0/0	a0022	579	1	0	0	1	0	0	copy fasta	LACTBL1	chr1	22948043	22977866
LACTBL1_chr1_22948043_22977866	0/0	a0023	579	1	1	0	0	0	0	copy fasta	LACTBL1	chr1	22948043	22977866
LACTBL1_chr1_22948043_22977866	0/0	a0024	579	1	1	0	0	0	0	copy fasta	LACTBL1	chr1	22948043	22977866
LACTBL1_chr1_22948043_22977866	0/0	a0025	579	1	1	0	0	0	0	copy fasta	LACTBL1	chr1	22948043	22977866
LACTB_chr15_63116861_63147061	0/0	a0001	547	318	61	40	179	7	31	copy fasta	LACTB	chr15	63116861	63147061
LACTB_chr15_63116861_63147061	1/0	a0002	547	55	23	15	0	4	12	copy fasta	LACTB	chr15	63116861	63147061
LACTB_chr15_63116861_63147061	0/0	a0003	547	23	11	11	0	1	0	copy fasta	LACTB	chr15	63116861	63147061
LACTB_chr15_63116861_63147061	0/0	a0004	547	7	0	4	0	3	0	copy fasta	LACTB	chr15	63116861	63147061
LACTB_chr15_63116861_63147061	0/0	a0005	547	5	0	2	0	0	3	copy fasta	LACTB	chr15	63116861	63147061
LACTB_chr15_63116861_63147061	0/0	a0006	547	3	2	1	0	0	0	copy fasta	LACTB	chr15	63116861	63147061
LACTB_chr15_63116861_63147061	0/0	a0007	547	2	1	1	0	0	0	copy fasta	LACTB	chr15	63116861	63147061
LACTB_chr15_63116861_63147061	0/1	a0008	547	1	0	0	0	0	0	copy fasta	LACTB	chr15	63116861	63147061
LACTB_chr15_63116861_63147061	0/0	a0009	547	1	0	0	0	1	0	copy fasta	LACTB	chr15	63116861	63147061
LACTB_chr15_63116861_63147061	0/0	a0010	547	1	0	0	1	0	0	copy fasta	LACTB	chr15	63116861	63147061
LAD1_chr1_201375833_201404324	1/0	a0001	517	160	15	34	85	5	20	copy fasta	LAD1	chr1	201375833	201404324
LAD1_chr1_201375833_201404324	0/0	a0002	517	120	15	17	75	3	10	copy fasta	LAD1	chr1	201375833	201404324
LAD1_chr1_201375833_201404324	0/0	a0003	516	34	15	0	14	3	2	copy fasta	LAD1	chr1	201375833	201404324
LAD1_chr1_201375833_201404324	0/0	a0004	517	32	20	4	7	0	1	copy fasta	LAD1	chr1	201375833	201404324
LAD1_chr1_201375833_201404324	0/0	a0005	517	28	15	7	0	1	5	copy fasta	LAD1	chr1	201375833	201404324
LAD1_chr1_201375833_201404324	0/1	a0006	516	23	1	2	15	1	3	copy fasta	LAD1	chr1	201375833	201404324
LAD1_chr1_201375833_201404324	0/0	a0007	517	10	9	1	0	0	0	copy fasta	LAD1	chr1	201375833	201404324
LAD1_chr1_201375833_201404324	0/0	a0008	517	4	0	0	4	0	0	copy fasta	LAD1	chr1	201375833	201404324