JoGo: Joint Open Genome and Omics Platform

Search Genic Haplotype Catalog

Haplotypefield

Choose the ACTG layer used to define haplotypes.

Genename

e.g. ALDH2, HBB.

Chr

Chromosome number (1-22, X, Y).

GRCh38

1 = haplotype type matches GRCh38; 0 = does not match.

Chm13v2

1 = haplotype type matches CHM13v2; 0 = does not match.

Gpopname

Filter by superpopulation group.

Popname

Filter by population group.

Total

Minimum number of hits (≥).

Start

Start coordinate (GRCh38).

End

End coordinate (GRCh38).

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regionname	grch38/ chm13v2 1/0: The haplotype type is the same as GRCh38 0/1: The haplotype type is the same as CHM13v2 0/0: The haplotype type matches neither GRCh38 nor CHM13v2 1/1: The haplotype type is the same on both GRCh38 and CHM13v2	ahapid	alen	total	AFR	AMR	EAS	EUR	SAS	aseq	genename	chr	start	end
LAD1_chr1_201375833_201404324	0/0	a0009	517	4	1	1	1	1	0	copy fasta	LAD1	chr1	201375833	201404324
LAD1_chr1_201375833_201404324	0/0	a0010	516	3	3	0	0	0	0	copy fasta	LAD1	chr1	201375833	201404324
LAD1_chr1_201375833_201404324	0/0	a0011	517	2	0	0	2	0	0	copy fasta	LAD1	chr1	201375833	201404324
LAD1_chr1_201375833_201404324	0/0	a0012	516	2	0	0	0	0	2	copy fasta	LAD1	chr1	201375833	201404324
LAD1_chr1_201375833_201404324	0/0	a0013	516	1	0	0	0	0	1	copy fasta	LAD1	chr1	201375833	201404324
LAD1_chr1_201375833_201404324	0/0	a0014	517	1	0	1	0	0	0	copy fasta	LAD1	chr1	201375833	201404324
LAD1_chr1_201375833_201404324	0/0	a0015	517	1	0	0	1	0	0	copy fasta	LAD1	chr1	201375833	201404324
LAD1_chr1_201375833_201404324	0/0	a0016	517	1	0	0	1	0	0	copy fasta	LAD1	chr1	201375833	201404324
LAD1_chr1_201375833_201404324	0/0	a0017	517	1	0	0	1	0	0	copy fasta	LAD1	chr1	201375833	201404324
LAD1_chr1_201375833_201404324	0/0	a0018	517	1	1	0	0	0	0	copy fasta	LAD1	chr1	201375833	201404324
LAD1_chr1_201375833_201404324	0/0	a0019	517	1	0	1	0	0	0	copy fasta	LAD1	chr1	201375833	201404324
LAD1_chr1_201375833_201404324	0/0	a0020	517	1	0	1	0	0	0	copy fasta	LAD1	chr1	201375833	201404324
LAD1_chr1_201375833_201404324	0/0	a0021	517	1	0	1	0	0	0	copy fasta	LAD1	chr1	201375833	201404324
LAD1_chr1_201375833_201404324	0/0	a0022	516	1	1	0	0	0	0	copy fasta	LAD1	chr1	201375833	201404324
LAG3_chr12_6767520_6783455	0/0	a0001	525	338	56	56	174	12	40	copy fasta	LAG3	chr12	6767520	6783455
LAG3_chr12_6767520_6783455	1/1	a0002	525	118	30	30	41	5	10	copy fasta	LAG3	chr12	6767520	6783455
LAG3_chr12_6767520_6783455	0/0	a0003	527	5	5	0	0	0	0	copy fasta	LAG3	chr12	6767520	6783455
LAG3_chr12_6767520_6783455	0/0	a0004	525	2	2	0	0	0	0	copy fasta	LAG3	chr12	6767520	6783455
LAG3_chr12_6767520_6783455	0/0	a0005	525	1	1	0	0	0	0	copy fasta	LAG3	chr12	6767520	6783455
LAG3_chr12_6767520_6783455	0/0	a0006	525	1	1	0	0	0	0	copy fasta	LAG3	chr12	6767520	6783455
LAG3_chr12_6767520_6783455	0/0	a0007	525	1	0	0	0	1	0	copy fasta	LAG3	chr12	6767520	6783455
LAG3_chr12_6767520_6783455	0/0	a0008	525	1	1	0	0	0	0	copy fasta	LAG3	chr12	6767520	6783455
LAG3_chr12_6767520_6783455	0/0	a0009	525	1	1	0	0	0	0	copy fasta	LAG3	chr12	6767520	6783455
LAG3_chr12_6767520_6783455	0/0	a0010	525	1	0	0	1	0	0	copy fasta	LAG3	chr12	6767520	6783455
LAG3_chr12_6767520_6783455	0/0	a0011	525	1	0	0	1	0	0	copy fasta	LAG3	chr12	6767520	6783455
LAG3_chr12_6767520_6783455	0/0	a0012	202	1	0	0	1	0	0	copy fasta	LAG3	chr12	6767520	6783455
LAG3_chr12_6767520_6783455	0/0	a0013	525	1	1	0	0	0	0	copy fasta	LAG3	chr12	6767520	6783455
LAGE3_chrX_154472775_154484281	1/1	a0001	143	269	72	51	101	11	32	copy fasta	LAGE3	chrX	154472775	154484281
LAGE3_chrX_154472775_154484281	0/0	a0002	143	7	0	0	6	0	1	copy fasta	LAGE3	chrX	154472775	154484281
LAGE3_chrX_154472775_154484281	0/0	a0003	143	4	0	0	4	0	0	copy fasta	LAGE3	chrX	154472775	154484281
LAGE3_chrX_154472775_154484281	0/0	a0004	143	2	0	0	2	0	0	copy fasta	LAGE3	chrX	154472775	154484281
LAGE3_chrX_154472775_154484281	0/0	a0005	143	1	0	0	0	0	1	copy fasta	LAGE3	chrX	154472775	154484281
LAGE3_chrX_154472775_154484281	0/0	a0006	143	1	0	0	1	0	0	copy fasta	LAGE3	chrX	154472775	154484281
LAGE3_chrX_154472775_154484281	0/0	a0007	143	1	1	0	0	0	0	copy fasta	LAGE3	chrX	154472775	154484281
LAIR1_chr19_54346384_54369931	0/0	a0000	0	1	1	0	0	0	0	copy fasta	LAIR1	chr19	54346384	54369931
LAIR1_chr19_54346384_54369931	0/1	a0001	287	336	75	66	148	12	34	copy fasta	LAIR1	chr19	54346384	54369931
LAIR1_chr19_54346384_54369931	0/0	a0002	287	85	10	14	52	1	8	copy fasta	LAIR1	chr19	54346384	54369931
LAIR1_chr19_54346384_54369931	1/0	a0003	287	13	0	0	11	0	1	copy fasta	LAIR1	chr19	54346384	54369931
LAIR1_chr19_54346384_54369931	0/0	a0004	287	7	4	0	0	2	1	copy fasta	LAIR1	chr19	54346384	54369931
LAIR1_chr19_54346384_54369931	0/0	a0005	287	4	3	1	0	0	0	copy fasta	LAIR1	chr19	54346384	54369931
LAIR1_chr19_54346384_54369931	0/0	a0006	287	3	0	2	0	1	0	copy fasta	LAIR1	chr19	54346384	54369931
LAIR1_chr19_54346384_54369931	0/0	a0007	287	3	3	0	0	0	0	copy fasta	LAIR1	chr19	54346384	54369931
LAIR1_chr19_54346384_54369931	0/0	a0008	287	2	0	0	2	0	0	copy fasta	LAIR1	chr19	54346384	54369931
LAIR1_chr19_54346384_54369931	0/0	a0009	287	2	2	0	0	0	0	copy fasta	LAIR1	chr19	54346384	54369931
LAIR1_chr19_54346384_54369931	0/0	a0010	287	2	0	0	0	0	2	copy fasta	LAIR1	chr19	54346384	54369931
LAIR1_chr19_54346384_54369931	0/0	a0011	287	1	0	0	1	0	0	copy fasta	LAIR1	chr19	54346384	54369931
LAIR1_chr19_54346384_54369931	0/0	a0012	287	1	0	1	0	0	0	copy fasta	LAIR1	chr19	54346384	54369931
LAIR1_chr19_54346384_54369931	0/0	a0013	287	1	0	1	0	0	0	copy fasta	LAIR1	chr19	54346384	54369931
LAIR1_chr19_54346384_54369931	0/0	a0014	287	1	0	1	0	0	0	copy fasta	LAIR1	chr19	54346384	54369931
LAIR2_chr19_54497831_54515687	0/0	a0000	0	3	0	1	0	0	2	copy fasta	LAIR2	chr19	54497831	54515687