JoGo: Joint Open Genome and Omics Platform

Search Genic Haplotype Catalog

Haplotypefield

Choose the ACTG layer used to define haplotypes.

Genename

e.g. ALDH2, HBB.

Chr

Chromosome number (1-22, X, Y).

GRCh38

1 = haplotype type matches GRCh38; 0 = does not match.

Chm13v2

1 = haplotype type matches CHM13v2; 0 = does not match.

Gpopname

Filter by superpopulation group.

Popname

Filter by population group.

Total

Minimum number of hits (≥).

Start

Start coordinate (GRCh38).

End

End coordinate (GRCh38).

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regionname	grch38/ chm13v2 1/0: The haplotype type is the same as GRCh38 0/1: The haplotype type is the same as CHM13v2 0/0: The haplotype type matches neither GRCh38 nor CHM13v2 1/1: The haplotype type is the same on both GRCh38 and CHM13v2	ahapid	alen	total	AFR	AMR	EAS	EUR	SAS	aseq	genename	chr	start	end
LAS1L_chrX_65507582_65539787	1/1	a0001	734	200	57	33	79	9	20	copy fasta	LAS1L	chrX	65507582	65539787
LAS1L_chrX_65507582_65539787	0/0	a0002	734	1	1	0	0	0	0	copy fasta	LAS1L	chrX	65507582	65539787
LAS1L_chrX_65507582_65539787	0/0	a0003	578	1	0	0	1	0	0	copy fasta	LAS1L	chrX	65507582	65539787
LASP1NB_chr17_38920614_38934381	1/1	a0001	25	422	90	74	198	14	44	copy fasta	LASP1NB	chr17	38920614	38934381
LASP1_chr17_38865058_38926770	1/1	a0001	261	394	96	77	155	16	48	copy fasta	LASP1	chr17	38865058	38926770
LASP1_chr17_38865058_38926770	0/0	a0002	261	1	0	1	0	0	0	copy fasta	LASP1	chr17	38865058	38926770
LASP1_chr17_38865058_38926770	0/0	a0003	261	1	0	0	1	0	0	copy fasta	LASP1	chr17	38865058	38926770
LAT2_chr7_74205006_74234834	1/1	a0001	243	336	86	70	122	14	42	copy fasta	LAT2	chr7	74205006	74234834
LAT2_chr7_74205006_74234834	0/0	a0002	243	3	0	3	0	0	0	copy fasta	LAT2	chr7	74205006	74234834
LAT2_chr7_74205006_74234834	0/0	a0003	243	1	0	0	1	0	0	copy fasta	LAT2	chr7	74205006	74234834
LAT2_chr7_74205006_74234834	0/0	a0004	243	1	1	0	0	0	0	copy fasta	LAT2	chr7	74205006	74234834
LAT2_chr7_74205006_74234834	0/0	a0005	243	1	0	1	0	0	0	copy fasta	LAT2	chr7	74205006	74234834
LAT2_chr7_74205006_74234834	0/0	a0006	243	1	0	0	1	0	0	copy fasta	LAT2	chr7	74205006	74234834
LAT2_chr7_74205006_74234834	0/0	a0007	243	1	1	0	0	0	0	copy fasta	LAT2	chr7	74205006	74234834
LATS1_chr6_149653153_149723101	1/1	a0001	1130	252	77	36	100	12	25	copy fasta	LATS1	chr6	149653153	149723101
LATS1_chr6_149653153_149723101	0/0	a0002	1130	7	7	0	0	0	0	copy fasta	LATS1	chr6	149653153	149723101
LATS1_chr6_149653153_149723101	0/0	a0003	1130	2	2	0	0	0	0	copy fasta	LATS1	chr6	149653153	149723101
LATS1_chr6_149653153_149723101	0/0	a0004	1130	2	0	0	2	0	0	copy fasta	LATS1	chr6	149653153	149723101
LATS1_chr6_149653153_149723101	0/0	a0005	1130	1	1	0	0	0	0	copy fasta	LATS1	chr6	149653153	149723101
LATS1_chr6_149653153_149723101	0/0	a0006	1130	1	0	0	1	0	0	copy fasta	LATS1	chr6	149653153	149723101
LATS1_chr6_149653153_149723101	0/0	a0007	1130	1	0	0	1	0	0	copy fasta	LATS1	chr6	149653153	149723101
LATS1_chr6_149653153_149723101	0/0	a0008	1130	1	0	0	0	0	1	copy fasta	LATS1	chr6	149653153	149723101
LATS1_chr6_149653153_149723101	0/0	a0009	1130	1	1	0	0	0	0	copy fasta	LATS1	chr6	149653153	149723101
LATS1_chr6_149653153_149723101	0/0	a0010	1130	1	0	1	0	0	0	copy fasta	LATS1	chr6	149653153	149723101
LATS1_chr6_149653153_149723101	0/0	a0011	1130	1	0	1	0	0	0	copy fasta	LATS1	chr6	149653153	149723101
LATS1_chr6_149653153_149723101	0/0	a0012	1130	1	0	1	0	0	0	copy fasta	LATS1	chr6	149653153	149723101
LATS1_chr6_149653153_149723101	0/0	a0013	1130	1	0	1	0	0	0	copy fasta	LATS1	chr6	149653153	149723101
LATS2_chr13_20968036_21066586	0/1	a0001	1090	95	4	24	53	4	9	copy fasta	LATS2	chr13	20968036	21066586
LATS2_chr13_20968036_21066586	0/0	a0002	1088	83	12	17	48	1	5	copy fasta	LATS2	chr13	20968036	21066586
LATS2_chr13_20968036_21066586	0/0	a0003	1088	78	32	14	22	1	9	copy fasta	LATS2	chr13	20968036	21066586
LATS2_chr13_20968036_21066586	1/0	a0004	1088	34	15	6	0	4	8	copy fasta	LATS2	chr13	20968036	21066586
LATS2_chr13_20968036_21066586	0/0	a0005	1090	7	5	1	0	0	1	copy fasta	LATS2	chr13	20968036	21066586
LATS2_chr13_20968036_21066586	0/0	a0006	1090	5	5	0	0	0	0	copy fasta	LATS2	chr13	20968036	21066586
LATS2_chr13_20968036_21066586	0/0	a0007	1088	5	0	0	5	0	0	copy fasta	LATS2	chr13	20968036	21066586
LATS2_chr13_20968036_21066586	0/0	a0008	1090	2	2	0	0	0	0	copy fasta	LATS2	chr13	20968036	21066586
LATS2_chr13_20968036_21066586	0/0	a0009	1088	2	0	2	0	0	0	copy fasta	LATS2	chr13	20968036	21066586
LATS2_chr13_20968036_21066586	0/0	a0010	1088	2	2	0	0	0	0	copy fasta	LATS2	chr13	20968036	21066586
LATS2_chr13_20968036_21066586	0/0	a0011	1088	1	0	0	1	0	0	copy fasta	LATS2	chr13	20968036	21066586
LATS2_chr13_20968036_21066586	0/0	a0012	1090	1	1	0	0	0	0	copy fasta	LATS2	chr13	20968036	21066586
LATS2_chr13_20968036_21066586	0/0	a0013	1092	1	0	0	1	0	0	copy fasta	LATS2	chr13	20968036	21066586
LAT_chr16_28980052_28995784	1/1	a0001	233	433	90	80	199	16	46	copy fasta	LAT	chr16	28980052	28995784
LAT_chr16_28980052_28995784	0/0	a0002	233	1	0	0	1	0	0	copy fasta	LAT	chr16	28980052	28995784
LAX1_chr1_203760183_203781372	1/1	a0001	398	399	89	68	190	13	37	copy fasta	LAX1	chr1	203760183	203781372
LAX1_chr1_203760183_203781372	0/0	a0002	398	7	0	0	6	0	1	copy fasta	LAX1	chr1	203760183	203781372
LAX1_chr1_203760183_203781372	0/0	a0003	398	2	0	2	0	0	0	copy fasta	LAX1	chr1	203760183	203781372
LAX1_chr1_203760183_203781372	0/0	a0004	398	2	0	0	2	0	0	copy fasta	LAX1	chr1	203760183	203781372
LAX1_chr1_203760183_203781372	0/0	a0005	398	2	0	2	0	0	0	copy fasta	LAX1	chr1	203760183	203781372
LAX1_chr1_203760183_203781372	0/0	a0006	398	1	1	0	0	0	0	copy fasta	LAX1	chr1	203760183	203781372
LAX1_chr1_203760183_203781372	0/0	a0007	398	1	0	0	0	1	0	copy fasta	LAX1	chr1	203760183	203781372
LAX1_chr1_203760183_203781372	0/0	a0008	398	1	0	1	0	0	0	copy fasta	LAX1	chr1	203760183	203781372