JoGo: Joint Open Genome and Omics Platform

Search Genic Haplotype Catalog

Haplotypefield

Choose the ACTG layer used to define haplotypes.

Genename

e.g. ALDH2, HBB.

Chr

Chromosome number (1-22, X, Y).

GRCh38

1 = haplotype type matches GRCh38; 0 = does not match.

Chm13v2

1 = haplotype type matches CHM13v2; 0 = does not match.

Gpopname

Filter by superpopulation group.

Popname

Filter by population group.

Total

Minimum number of hits (≥).

Start

Start coordinate (GRCh38).

End

End coordinate (GRCh38).

Sort By

Choose a field to sort by.

Order by

Ascending / Descending.

Show

Results per page.

regionname	grch38/ chm13v2 1/0: The haplotype type is the same as GRCh38 0/1: The haplotype type is the same as CHM13v2 0/0: The haplotype type matches neither GRCh38 nor CHM13v2 1/1: The haplotype type is the same on both GRCh38 and CHM13v2	ahapid	alen	total	AFR	AMR	EAS	EUR	SAS	aseq	genename	chr	start	end
LCE7A_chr1_152854996_152866252	1/1	a0001	95	373	77	64	180	8	42	copy fasta	LCE7A	chr1	152854996	152866252
LCE7A_chr1_152854996_152866252	0/0	a0002	95	17	16	1	0	0	0	copy fasta	LCE7A	chr1	152854996	152866252
LCE7A_chr1_152854996_152866252	0/0	a0003	95	5	5	0	0	0	0	copy fasta	LCE7A	chr1	152854996	152866252
LCE7A_chr1_152854996_152866252	0/0	a0004	95	2	0	0	2	0	0	copy fasta	LCE7A	chr1	152854996	152866252
LCE7A_chr1_152854996_152866252	0/0	a0005	95	1	0	1	0	0	0	copy fasta	LCE7A	chr1	152854996	152866252
LCK_chr1_32246265_32291165	1/1	a0001	509	253	79	41	75	16	40	copy fasta	LCK	chr1	32246265	32291165
LCK_chr1_32246265_32291165	0/0	a0002	509	15	0	15	0	0	0	copy fasta	LCK	chr1	32246265	32291165
LCK_chr1_32246265_32291165	0/0	a0003	509	3	2	1	0	0	0	copy fasta	LCK	chr1	32246265	32291165
LCK_chr1_32246265_32291165	0/0	a0004	509	1	1	0	0	0	0	copy fasta	LCK	chr1	32246265	32291165
LCK_chr1_32246265_32291165	0/0	a0005	509	1	0	0	1	0	0	copy fasta	LCK	chr1	32246265	32291165
LCK_chr1_32246265_32291165	0/0	a0006	509	1	0	1	0	0	0	copy fasta	LCK	chr1	32246265	32291165
LCLAT1_chr2_30442246_30649225	1/1	a0001	376	293	79	51	118	13	30	copy fasta	LCLAT1	chr2	30442246	30649225
LCLAT1_chr2_30442246_30649225	0/0	a0002	376	67	7	15	34	1	10	copy fasta	LCLAT1	chr2	30442246	30649225
LCLAT1_chr2_30442246_30649225	0/0	a0003	376	2	0	0	2	0	0	copy fasta	LCLAT1	chr2	30442246	30649225
LCLAT1_chr2_30442246_30649225	0/0	a0004	376	2	2	0	0	0	0	copy fasta	LCLAT1	chr2	30442246	30649225
LCLAT1_chr2_30442246_30649225	0/0	a0005	376	1	0	0	1	0	0	copy fasta	LCLAT1	chr2	30442246	30649225
LCLAT1_chr2_30442246_30649225	0/0	a0006	376	1	0	0	1	0	0	copy fasta	LCLAT1	chr2	30442246	30649225
LCMT1_chr16_25106742_25183228	1/1	a0001	334	347	90	58	147	16	34	copy fasta	LCMT1	chr16	25106742	25183228
LCMT1_chr16_25106742_25183228	0/0	a0002	334	1	0	0	1	0	0	copy fasta	LCMT1	chr16	25106742	25183228
LCMT2_chr15_43318649_43335573	1/1	a0001	686	369	80	66	166	14	41	copy fasta	LCMT2	chr15	43318649	43335573
LCMT2_chr15_43318649_43335573	0/0	a0002	686	34	0	1	29	2	2	copy fasta	LCMT2	chr15	43318649	43335573
LCMT2_chr15_43318649_43335573	0/0	a0003	686	3	3	0	0	0	0	copy fasta	LCMT2	chr15	43318649	43335573
LCMT2_chr15_43318649_43335573	0/0	a0004	686	1	0	1	0	0	0	copy fasta	LCMT2	chr15	43318649	43335573
LCMT2_chr15_43318649_43335573	0/0	a0005	686	1	1	0	0	0	0	copy fasta	LCMT2	chr15	43318649	43335573
LCMT2_chr15_43318649_43335573	0/0	a0006	686	1	0	0	1	0	0	copy fasta	LCMT2	chr15	43318649	43335573
LCMT2_chr15_43318649_43335573	0/0	a0007	686	1	0	0	0	0	1	copy fasta	LCMT2	chr15	43318649	43335573
LCN10_chr9_136733170_136747940	1/1	a0001	200	303	80	65	98	13	45	copy fasta	LCN10	chr9	136733170	136747940
LCN10_chr9_136733170_136747940	0/0	a0002	160	84	14	17	47	3	3	copy fasta	LCN10	chr9	136733170	136747940
LCN10_chr9_136733170_136747940	0/0	a0003	200	2	2	0	0	0	0	copy fasta	LCN10	chr9	136733170	136747940
LCN10_chr9_136733170_136747940	0/0	a0004	200	1	0	0	1	0	0	copy fasta	LCN10	chr9	136733170	136747940
LCN10_chr9_136733170_136747940	0/0	a0005	160	1	1	0	0	0	0	copy fasta	LCN10	chr9	136733170	136747940
LCN10_chr9_136733170_136747940	0/0	a0006	160	1	1	0	0	0	0	copy fasta	LCN10	chr9	136733170	136747940
LCN12_chr9_136947273_136960497	1/1	a0001	192	357	73	75	144	15	48	copy fasta	LCN12	chr9	136947273	136960497
LCN12_chr9_136947273_136960497	0/0	a0002	192	23	14	3	5	1	0	copy fasta	LCN12	chr9	136947273	136960497
LCN12_chr9_136947273_136960497	0/0	a0003	192	1	1	0	0	0	0	copy fasta	LCN12	chr9	136947273	136960497
LCN12_chr9_136947273_136960497	0/0	a0004	190	1	0	0	1	0	0	copy fasta	LCN12	chr9	136947273	136960497
LCN15_chr9_136754634_136769518	0/1	a0001	184	244	57	52	96	13	25	copy fasta	LCN15	chr9	136754634	136769518
LCN15_chr9_136754634_136769518	1/0	a0002	184	108	33	16	32	5	21	copy fasta	LCN15	chr9	136754634	136769518
LCN15_chr9_136754634_136769518	0/0	a0003	184	3	3	0	0	0	0	copy fasta	LCN15	chr9	136754634	136769518
LCN15_chr9_136754634_136769518	0/0	a0004	184	1	1	0	0	0	0	copy fasta	LCN15	chr9	136754634	136769518
LCN1_chr9_135516440_135531540	1/1	a0001	176	414	85	81	185	15	46	copy fasta	LCN1	chr9	135516440	135531540
LCN1_chr9_135516440_135531540	0/0	a0002	176	7	0	0	6	1	0	copy fasta	LCN1	chr9	135516440	135531540
LCN1_chr9_135516440_135531540	0/0	a0003	176	4	3	1	0	0	0	copy fasta	LCN1	chr9	135516440	135531540
LCN1_chr9_135516440_135531540	0/0	a0004	176	3	3	0	0	0	0	copy fasta	LCN1	chr9	135516440	135531540
LCN1_chr9_135516440_135531540	0/0	a0005	176	2	2	0	0	0	0	copy fasta	LCN1	chr9	135516440	135531540
LCN1_chr9_135516440_135531540	0/0	a0006	176	2	2	0	0	0	0	copy fasta	LCN1	chr9	135516440	135531540
LCN1_chr9_135516440_135531540	0/0	a0007	176	2	1	1	0	0	0	copy fasta	LCN1	chr9	135516440	135531540
LCN1_chr9_135516440_135531540	0/0	a0008	176	1	0	0	1	0	0	copy fasta	LCN1	chr9	135516440	135531540
LCN1_chr9_135516440_135531540	0/0	a0009	176	1	0	1	0	0	0	copy fasta	LCN1	chr9	135516440	135531540
LCN2_chr9_128144453_128158453	1/1	a0001	198	405	90	68	185	18	42	copy fasta	LCN2	chr9	128144453	128158453