JoGo: Joint Open Genome and Omics Platform

Search Genic Haplotype Catalog

Haplotypefield

Choose the ACTG layer used to define haplotypes.

Genename

e.g. ALDH2, HBB.

Chr

Chromosome number (1-22, X, Y).

GRCh38

1 = haplotype type matches GRCh38; 0 = does not match.

Chm13v2

1 = haplotype type matches CHM13v2; 0 = does not match.

Gpopname

Filter by superpopulation group.

Popname

Filter by population group.

Total

Minimum number of hits (≥).

Start

Start coordinate (GRCh38).

End

End coordinate (GRCh38).

Sort By

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regionname	grch38/ chm13v2 1/0: The haplotype type is the same as GRCh38 0/1: The haplotype type is the same as CHM13v2 0/0: The haplotype type matches neither GRCh38 nor CHM13v2 1/1: The haplotype type is the same on both GRCh38 and CHM13v2	ahapid	alen	total	AFR	AMR	EAS	EUR	SAS	aseq	genename	chr	start	end
LENG8_chr19_54444199_54467016	0/0	a0002	800	15	1	7	2	0	5	copy fasta	LENG8	chr19	54444199	54467016
LENG8_chr19_54444199_54467016	0/0	a0003	800	8	0	2	6	0	0	copy fasta	LENG8	chr19	54444199	54467016
LENG8_chr19_54444199_54467016	0/0	a0004	800	4	0	0	4	0	0	copy fasta	LENG8	chr19	54444199	54467016
LENG8_chr19_54444199_54467016	0/0	a0005	800	2	0	0	2	0	0	copy fasta	LENG8	chr19	54444199	54467016
LENG8_chr19_54444199_54467016	0/0	a0006	800	1	0	0	1	0	0	copy fasta	LENG8	chr19	54444199	54467016
LENG8_chr19_54444199_54467016	0/0	a0007	800	1	0	0	1	0	0	copy fasta	LENG8	chr19	54444199	54467016
LENG8_chr19_54444199_54467016	0/0	a0008	800	1	1	0	0	0	0	copy fasta	LENG8	chr19	54444199	54467016
LENG8_chr19_54444199_54467016	0/0	a0009	800	1	1	0	0	0	0	copy fasta	LENG8	chr19	54444199	54467016
LENG8_chr19_54444199_54467016	0/0	a0010	800	1	0	1	0	0	0	copy fasta	LENG8	chr19	54444199	54467016
LENG8_chr19_54444199_54467016	0/0	a0011	800	1	0	0	1	0	0	copy fasta	LENG8	chr19	54444199	54467016
LENG8_chr19_54444199_54467016	0/0	a0012	800	1	1	0	0	0	0	copy fasta	LENG8	chr19	54444199	54467016
LENG9_chr19_54456732_54468778	0/1	a0001	479	148	8	28	92	7	12	copy fasta	LENG9	chr19	54456732	54468778
LENG9_chr19_54456732_54468778	0/0	a0002	478	147	41	23	59	5	19	copy fasta	LENG9	chr19	54456732	54468778
LENG9_chr19_54456732_54468778	0/0	a0003	479	64	22	11	22	0	9	copy fasta	LENG9	chr19	54456732	54468778
LENG9_chr19_54456732_54468778	0/0	a0004	479	20	16	3	1	0	0	copy fasta	LENG9	chr19	54456732	54468778
LENG9_chr19_54456732_54468778	0/0	a0005	479	6	4	2	0	0	0	copy fasta	LENG9	chr19	54456732	54468778
LENG9_chr19_54456732_54468778	0/0	a0006	479	5	0	0	4	0	1	copy fasta	LENG9	chr19	54456732	54468778
LENG9_chr19_54456732_54468778	0/0	a0007	478	5	0	4	0	0	1	copy fasta	LENG9	chr19	54456732	54468778
LENG9_chr19_54456732_54468778	0/0	a0008	478	5	1	2	0	0	2	copy fasta	LENG9	chr19	54456732	54468778
LENG9_chr19_54456732_54468778	0/0	a0009	478	3	0	2	0	1	0	copy fasta	LENG9	chr19	54456732	54468778
LENG9_chr19_54456732_54468778	0/0	a0010	479	2	0	1	0	0	1	copy fasta	LENG9	chr19	54456732	54468778
LENG9_chr19_54456732_54468778	0/0	a0011	478	2	2	0	0	0	0	copy fasta	LENG9	chr19	54456732	54468778
LENG9_chr19_54456732_54468778	0/0	a0012	479	2	2	0	0	0	0	copy fasta	LENG9	chr19	54456732	54468778
LENG9_chr19_54456732_54468778	0/0	a0013	478	1	1	0	0	0	0	copy fasta	LENG9	chr19	54456732	54468778
LENG9_chr19_54456732_54468778	0/0	a0014	208	1	0	0	0	0	1	copy fasta	LENG9	chr19	54456732	54468778
LENG9_chr19_54456732_54468778	0/0	a0015	478	1	0	0	1	0	0	copy fasta	LENG9	chr19	54456732	54468778
LENG9_chr19_54456732_54468778	0/0	a0016	479	1	0	0	1	0	0	copy fasta	LENG9	chr19	54456732	54468778
LENG9_chr19_54456732_54468778	0/0	a0017	479	1	0	0	1	0	0	copy fasta	LENG9	chr19	54456732	54468778
LENG9_chr19_54456732_54468778	0/0	a0018	479	1	0	1	0	0	0	copy fasta	LENG9	chr19	54456732	54468778
LENG9_chr19_54456732_54468778	0/0	a0019	308	1	0	0	1	0	0	copy fasta	LENG9	chr19	54456732	54468778
LENG9_chr19_54456732_54468778	0/0	a0020	478	1	0	0	0	1	0	copy fasta	LENG9	chr19	54456732	54468778
LENG9_chr19_54456732_54468778	0/0	a0021	478	1	0	1	0	0	0	copy fasta	LENG9	chr19	54456732	54468778
LENG9_chr19_54456732_54468778	0/0	a0022	478	1	0	1	0	0	0	copy fasta	LENG9	chr19	54456732	54468778
LENG9_chr19_54456732_54468778	0/0	a0023	478	1	0	1	0	0	0	copy fasta	LENG9	chr19	54456732	54468778
LENG9_chr19_54456732_54468778	0/0	a0024	478	1	1	0	0	0	0	copy fasta	LENG9	chr19	54456732	54468778
LEO1_chr15_51933025_51976778	1/1	a0001	666	384	92	77	169	12	32	copy fasta	LEO1	chr15	51933025	51976778
LEO1_chr15_51933025_51976778	0/0	a0002	666	2	0	0	2	0	0	copy fasta	LEO1	chr15	51933025	51976778
LEO1_chr15_51933025_51976778	0/0	a0003	666	1	0	0	1	0	0	copy fasta	LEO1	chr15	51933025	51976778
LEO1_chr15_51933025_51976778	0/0	a0004	666	1	0	1	0	0	0	copy fasta	LEO1	chr15	51933025	51976778
LEPROTL1_chr8_30090408_30113524	1/1	a0001	131	416	94	66	200	16	38	copy fasta	LEPROTL1	chr8	30090408	30113524
LEPROT_chr1_65415668_65441007	1/1	a0001	131	401	95	80	156	18	50	copy fasta	LEPROT	chr1	65415668	65441007
LEPROT_chr1_65415668_65441007	0/0	a0002	131	1	1	0	0	0	0	copy fasta	LEPROT	chr1	65415668	65441007
LEPR_chr1_65415668_65646559	1/0	a0001	1165	64	19	17	11	3	13	copy fasta	LEPR	chr1	65415668	65646559
LEPR_chr1_65415668_65646559	0/0	a0002	1165	53	10	12	22	7	2	copy fasta	LEPR	chr1	65415668	65646559
LEPR_chr1_65415668_65646559	0/0	a0003	1165	52	14	16	6	5	11	copy fasta	LEPR	chr1	65415668	65646559
LEPR_chr1_65415668_65646559	0/1	a0004	1165	21	0	9	5	3	3	copy fasta	LEPR	chr1	65415668	65646559
LEPR_chr1_65415668_65646559	0/0	a0005	1165	16	14	1	1	0	0	copy fasta	LEPR	chr1	65415668	65646559
LEPR_chr1_65415668_65646559	0/0	a0006	1165	2	1	1	0	0	0	copy fasta	LEPR	chr1	65415668	65646559
LEPR_chr1_65415668_65646559	0/0	a0007	1165	2	1	1	0	0	0	copy fasta	LEPR	chr1	65415668	65646559
LEPR_chr1_65415668_65646559	0/0	a0008	1165	1	1	0	0	0	0	copy fasta	LEPR	chr1	65415668	65646559