JoGo: Joint Open Genome and Omics Platform

Search Genic Haplotype Catalog

Haplotypefield

Choose the ACTG layer used to define haplotypes.

Genename

e.g. ALDH2, HBB.

Chr

Chromosome number (1-22, X, Y).

GRCh38

1 = haplotype type matches GRCh38; 0 = does not match.

Chm13v2

1 = haplotype type matches CHM13v2; 0 = does not match.

Gpopname

Filter by superpopulation group.

Popname

Filter by population group.

Total

Minimum number of hits (≥).

Start

Start coordinate (GRCh38).

End

End coordinate (GRCh38).

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regionname	grch38/ chm13v2 1/0: The haplotype type is the same as GRCh38 0/1: The haplotype type is the same as CHM13v2 0/0: The haplotype type matches neither GRCh38 nor CHM13v2 1/1: The haplotype type is the same on both GRCh38 and CHM13v2	ahapid	alen	total	AFR	AMR	EAS	EUR	SAS	aseq	genename	chr	start	end
LGALS3_chr14_55124252_55150423	1/1	a0001	250	132	6	29	74	8	13	copy fasta	LGALS3	chr14	55124252	55150423
LGALS3_chr14_55124252_55150423	0/0	a0002	250	119	43	11	58	0	7	copy fasta	LGALS3	chr14	55124252	55150423
LGALS3_chr14_55124252_55150423	0/0	a0003	250	98	28	12	42	6	10	copy fasta	LGALS3	chr14	55124252	55150423
LGALS3_chr14_55124252_55150423	0/0	a0004	250	15	0	8	0	0	7	copy fasta	LGALS3	chr14	55124252	55150423
LGALS3_chr14_55124252_55150423	0/0	a0005	250	8	8	0	0	0	0	copy fasta	LGALS3	chr14	55124252	55150423
LGALS3_chr14_55124252_55150423	0/0	a0006	250	1	0	0	1	0	0	copy fasta	LGALS3	chr14	55124252	55150423
LGALS3_chr14_55124252_55150423	0/0	a0007	250	1	1	0	0	0	0	copy fasta	LGALS3	chr14	55124252	55150423
LGALS3_chr14_55124252_55150423	0/0	a0008	250	1	0	0	0	0	1	copy fasta	LGALS3	chr14	55124252	55150423
LGALS3_chr14_55124252_55150423	0/0	a0009	250	1	0	0	1	0	0	copy fasta	LGALS3	chr14	55124252	55150423
LGALS4_chr19_38796674_38817945	1/1	a0001	323	414	81	78	195	16	42	copy fasta	LGALS4	chr19	38796674	38817945
LGALS4_chr19_38796674_38817945	0/0	a0002	323	6	6	0	0	0	0	copy fasta	LGALS4	chr19	38796674	38817945
LGALS4_chr19_38796674_38817945	0/0	a0003	323	1	0	0	1	0	0	copy fasta	LGALS4	chr19	38796674	38817945
LGALS4_chr19_38796674_38817945	0/0	a0004	323	1	1	0	0	0	0	copy fasta	LGALS4	chr19	38796674	38817945
LGALS4_chr19_38796674_38817945	0/0	a0005	323	1	0	0	1	0	0	copy fasta	LGALS4	chr19	38796674	38817945
LGALS4_chr19_38796674_38817945	0/0	a0006	323	1	1	0	0	0	0	copy fasta	LGALS4	chr19	38796674	38817945
LGALS4_chr19_38796674_38817945	0/0	a0007	323	1	1	0	0	0	0	copy fasta	LGALS4	chr19	38796674	38817945
LGALS4_chr19_38796674_38817945	0/0	a0008	323	1	0	0	1	0	0	copy fasta	LGALS4	chr19	38796674	38817945
LGALS8_chr1_236518982_236557981	0/1	a0001	317	189	39	38	85	8	18	copy fasta	LGALS8	chr1	236518982	236557981
LGALS8_chr1_236518982_236557981	1/0	a0002	317	148	31	17	70	4	25	copy fasta	LGALS8	chr1	236518982	236557981
LGALS8_chr1_236518982_236557981	0/0	a0003	317	80	23	9	44	1	3	copy fasta	LGALS8	chr1	236518982	236557981
LGALS8_chr1_236518982_236557981	0/0	a0004	317	24	3	9	10	0	2	copy fasta	LGALS8	chr1	236518982	236557981
LGALS8_chr1_236518982_236557981	0/0	a0005	313	5	0	1	3	1	0	copy fasta	LGALS8	chr1	236518982	236557981
LGALS8_chr1_236518982_236557981	0/0	a0006	317	1	1	0	0	0	0	copy fasta	LGALS8	chr1	236518982	236557981
LGALS8_chr1_236518982_236557981	0/0	a0007	317	1	0	1	0	0	0	copy fasta	LGALS8	chr1	236518982	236557981
LGALS8_chr1_236518982_236557981	0/0	a0008	317	1	0	1	0	0	0	copy fasta	LGALS8	chr1	236518982	236557981
LGALS8_chr1_236518982_236557981	0/0	a0009	317	1	1	0	0	0	0	copy fasta	LGALS8	chr1	236518982	236557981
LGALS9B_chr17_20444395_20472539	0/0	a0001	356	215	42	37	101	3	32	copy fasta	LGALS9B	chr17	20444395	20472539
LGALS9B_chr17_20444395_20472539	1/0	a0002	356	50	19	3	25	2	0	copy fasta	LGALS9B	chr17	20444395	20472539
LGALS9B_chr17_20444395_20472539	0/0	a0003	356	46	9	17	15	3	2	copy fasta	LGALS9B	chr17	20444395	20472539
LGALS9B_chr17_20444395_20472539	0/0	a0004	356	40	3	19	3	6	9	copy fasta	LGALS9B	chr17	20444395	20472539
LGALS9B_chr17_20444395_20472539	0/0	a0005	356	40	5	3	26	3	3	copy fasta	LGALS9B	chr17	20444395	20472539
LGALS9B_chr17_20444395_20472539	0/0	a0006	356	11	2	3	6	0	0	copy fasta	LGALS9B	chr17	20444395	20472539
LGALS9B_chr17_20444395_20472539	0/0	a0007	356	9	3	3	3	0	0	copy fasta	LGALS9B	chr17	20444395	20472539
LGALS9B_chr17_20444395_20472539	0/0	a0008	356	5	3	0	2	0	0	copy fasta	LGALS9B	chr17	20444395	20472539
LGALS9B_chr17_20444395_20472539	0/0	a0009	356	3	2	0	0	0	1	copy fasta	LGALS9B	chr17	20444395	20472539
LGALS9B_chr17_20444395_20472539	0/0	a0010	356	2	0	0	2	0	0	copy fasta	LGALS9B	chr17	20444395	20472539
LGALS9B_chr17_20444395_20472539	0/0	a0011	356	2	0	0	2	0	0	copy fasta	LGALS9B	chr17	20444395	20472539
LGALS9B_chr17_20444395_20472539	0/0	a0012	356	1	0	0	0	0	1	copy fasta	LGALS9B	chr17	20444395	20472539
LGALS9B_chr17_20444395_20472539	0/0	a0013	356	1	1	0	0	0	0	copy fasta	LGALS9B	chr17	20444395	20472539
LGALS9B_chr17_20444395_20472539	0/0	a0014	356	1	0	0	1	0	0	copy fasta	LGALS9B	chr17	20444395	20472539
LGALS9B_chr17_20444395_20472539	0/0	a0015	356	1	1	0	0	0	0	copy fasta	LGALS9B	chr17	20444395	20472539
LGALS9B_chr17_20444395_20472539	0/0	a0016	356	1	0	0	0	1	0	copy fasta	LGALS9B	chr17	20444395	20472539
LGALS9B_chr17_20444395_20472539	0/0	a0017	356	1	1	0	0	0	0	copy fasta	LGALS9B	chr17	20444395	20472539
LGALS9B_chr17_20444395_20472539	0/0	a0018	356	1	1	0	0	0	0	copy fasta	LGALS9B	chr17	20444395	20472539
LGALS9B_chr17_20444395_20472539	0/0	a0019	356	1	1	0	0	0	0	copy fasta	LGALS9B	chr17	20444395	20472539
LGALS9B_chr17_20444395_20472539	0/0	a0020	356	1	0	1	0	0	0	copy fasta	LGALS9B	chr17	20444395	20472539
LGALS9B_chr17_20444395_20472539	0/0	a0021	356	1	1	0	0	0	0	copy fasta	LGALS9B	chr17	20444395	20472539
LGALS9C_chr17_18471789_18499945	1/0	a0001	356	196	27	28	122	3	15	copy fasta	LGALS9C	chr17	18471789	18499945
LGALS9C_chr17_18471789_18499945	0/0	a0002	356	71	11	15	36	2	7	copy fasta	LGALS9C	chr17	18471789	18499945
LGALS9C_chr17_18471789_18499945	0/0	a0003	356	4	4	0	0	0	0	copy fasta	LGALS9C	chr17	18471789	18499945