JoGo: Joint Open Genome and Omics Platform

Search Genic Haplotype Catalog

Haplotypefield

Choose the ACTG layer used to define haplotypes.

Genename

e.g. ALDH2, HBB.

Chr

Chromosome number (1-22, X, Y).

GRCh38

1 = haplotype type matches GRCh38; 0 = does not match.

Chm13v2

1 = haplotype type matches CHM13v2; 0 = does not match.

Gpopname

Filter by superpopulation group.

Popname

Filter by population group.

Total

Minimum number of hits (≥).

Start

Start coordinate (GRCh38).

End

End coordinate (GRCh38).

Sort By

Choose a field to sort by.

Order by

Ascending / Descending.

Show

Results per page.

regionname	grch38/ chm13v2 1/0: The haplotype type is the same as GRCh38 0/1: The haplotype type is the same as CHM13v2 0/0: The haplotype type matches neither GRCh38 nor CHM13v2 1/1: The haplotype type is the same on both GRCh38 and CHM13v2	ahapid	alen	total	AFR	AMR	EAS	EUR	SAS	aseq	genename	chr	start	end
LGALS9C_chr17_18471789_18499945	0/0	a0004	356	4	3	1	0	0	0	copy fasta	LGALS9C	chr17	18471789	18499945
LGALS9C_chr17_18471789_18499945	0/0	a0005	356	3	3	0	0	0	0	copy fasta	LGALS9C	chr17	18471789	18499945
LGALS9C_chr17_18471789_18499945	0/0	a0006	356	2	0	0	1	0	1	copy fasta	LGALS9C	chr17	18471789	18499945
LGALS9C_chr17_18471789_18499945	0/0	a0007	356	2	0	0	0	0	2	copy fasta	LGALS9C	chr17	18471789	18499945
LGALS9C_chr17_18471789_18499945	0/0	a0008	356	2	0	0	0	1	1	copy fasta	LGALS9C	chr17	18471789	18499945
LGALS9C_chr17_18471789_18499945	0/0	a0009	356	2	0	0	0	0	2	copy fasta	LGALS9C	chr17	18471789	18499945
LGALS9C_chr17_18471789_18499945	0/0	a0010	356	2	2	0	0	0	0	copy fasta	LGALS9C	chr17	18471789	18499945
LGALS9C_chr17_18471789_18499945	0/0	a0011	356	1	0	0	1	0	0	copy fasta	LGALS9C	chr17	18471789	18499945
LGALS9C_chr17_18471789_18499945	0/0	a0012	356	1	1	0	0	0	0	copy fasta	LGALS9C	chr17	18471789	18499945
LGALS9C_chr17_18471789_18499945	0/0	a0013	356	1	1	0	0	0	0	copy fasta	LGALS9C	chr17	18471789	18499945
LGALS9_chr17_27626188_27654560	1/1	a0001	355	305	69	40	149	12	33	copy fasta	LGALS9	chr17	27626188	27654560
LGALS9_chr17_27626188_27654560	0/0	a0002	355	89	7	22	48	4	8	copy fasta	LGALS9	chr17	27626188	27654560
LGALS9_chr17_27626188_27654560	0/0	a0003	355	15	7	6	0	0	2	copy fasta	LGALS9	chr17	27626188	27654560
LGALS9_chr17_27626188_27654560	0/0	a0004	355	12	0	9	0	2	1	copy fasta	LGALS9	chr17	27626188	27654560
LGALS9_chr17_27626188_27654560	0/0	a0005	355	7	0	2	5	0	0	copy fasta	LGALS9	chr17	27626188	27654560
LGALS9_chr17_27626188_27654560	0/0	a0006	355	6	6	0	0	0	0	copy fasta	LGALS9	chr17	27626188	27654560
LGALS9_chr17_27626188_27654560	0/0	a0007	355	4	0	0	4	0	0	copy fasta	LGALS9	chr17	27626188	27654560
LGALS9_chr17_27626188_27654560	0/0	a0008	355	4	2	1	1	0	0	copy fasta	LGALS9	chr17	27626188	27654560
LGALS9_chr17_27626188_27654560	0/0	a0009	355	1	0	0	0	0	1	copy fasta	LGALS9	chr17	27626188	27654560
LGALS9_chr17_27626188_27654560	0/0	a0010	355	1	1	0	0	0	0	copy fasta	LGALS9	chr17	27626188	27654560
LGALS9_chr17_27626188_27654560	0/0	a0011	355	1	0	0	1	0	0	copy fasta	LGALS9	chr17	27626188	27654560
LGALS9_chr17_27626188_27654560	0/0	a0012	355	1	0	0	0	0	1	copy fasta	LGALS9	chr17	27626188	27654560
LGALSL_chr2_64449162_64466381	1/1	a0001	172	420	93	78	181	18	48	copy fasta	LGALSL	chr2	64449162	64466381
LGALSL_chr2_64449162_64466381	0/0	a0002	172	1	1	0	0	0	0	copy fasta	LGALSL	chr2	64449162	64466381
LGALSL_chr2_64449162_64466381	0/0	a0003	172	1	0	0	1	0	0	copy fasta	LGALSL	chr2	64449162	64466381
LGI1_chr10_93752936_93803159	1/1	a0001	557	373	89	75	155	16	36	copy fasta	LGI1	chr10	93752936	93803159
LGI1_chr10_93752936_93803159	0/0	a0002	557	1	0	0	1	0	0	copy fasta	LGI1	chr10	93752936	93803159
LGI1_chr10_93752936_93803159	0/0	a0003	557	1	1	0	0	0	0	copy fasta	LGI1	chr10	93752936	93803159
LGI1_chr10_93752936_93803159	0/0	a0004	557	1	0	1	0	0	0	copy fasta	LGI1	chr10	93752936	93803159
LGI2_chr4_24993847_25035946	1/1	a0001	545	359	82	56	174	9	36	copy fasta	LGI2	chr4	24993847	25035946
LGI2_chr4_24993847_25035946	0/0	a0002	545	90	16	17	42	5	10	copy fasta	LGI2	chr4	24993847	25035946
LGI2_chr4_24993847_25035946	0/0	a0003	545	2	0	1	0	0	1	copy fasta	LGI2	chr4	24993847	25035946
LGI2_chr4_24993847_25035946	0/0	a0004	545	1	0	0	0	0	1	copy fasta	LGI2	chr4	24993847	25035946
LGI2_chr4_24993847_25035946	0/0	a0005	545	1	0	1	0	0	0	copy fasta	LGI2	chr4	24993847	25035946
LGI2_chr4_24993847_25035946	0/0	a0006	545	1	0	1	0	0	0	copy fasta	LGI2	chr4	24993847	25035946
LGI3_chr8_22141830_22161806	1/1	a0001	548	386	82	78	159	17	48	copy fasta	LGI3	chr8	22141830	22161806
LGI3_chr8_22141830_22161806	0/0	a0002	548	7	7	0	0	0	0	copy fasta	LGI3	chr8	22141830	22161806
LGI3_chr8_22141830_22161806	0/0	a0003	548	5	5	0	0	0	0	copy fasta	LGI3	chr8	22141830	22161806
LGI3_chr8_22141830_22161806	0/0	a0004	548	3	1	2	0	0	0	copy fasta	LGI3	chr8	22141830	22161806
LGI3_chr8_22141830_22161806	0/0	a0005	548	2	0	0	1	0	1	copy fasta	LGI3	chr8	22141830	22161806
LGI3_chr8_22141830_22161806	0/0	a0006	548	1	1	0	0	0	0	copy fasta	LGI3	chr8	22141830	22161806
LGI3_chr8_22141830_22161806	0/0	a0007	548	1	0	0	1	0	0	copy fasta	LGI3	chr8	22141830	22161806
LGI3_chr8_22141830_22161806	0/0	a0008	548	1	0	0	0	1	0	copy fasta	LGI3	chr8	22141830	22161806
LGI3_chr8_22141830_22161806	0/0	a0009	548	1	0	0	0	0	1	copy fasta	LGI3	chr8	22141830	22161806
LGI3_chr8_22141830_22161806	0/0	a0010	548	1	0	0	1	0	0	copy fasta	LGI3	chr8	22141830	22161806
LGI4_chr19_35119513_35140059	1/1	a0001	537	376	74	72	170	14	44	copy fasta	LGI4	chr19	35119513	35140059
LGI4_chr19_35119513_35140059	0/0	a0002	537	14	13	1	0	0	0	copy fasta	LGI4	chr19	35119513	35140059
LGI4_chr19_35119513_35140059	0/0	a0003	537	4	3	1	0	0	0	copy fasta	LGI4	chr19	35119513	35140059
LGI4_chr19_35119513_35140059	0/0	a0004	537	3	0	0	3	0	0	copy fasta	LGI4	chr19	35119513	35140059
LGI4_chr19_35119513_35140059	0/0	a0005	537	1	0	0	1	0	0	copy fasta	LGI4	chr19	35119513	35140059