JoGo: Joint Open Genome and Omics Platform

Search Genic Haplotype Catalog

Haplotypefield

Choose the ACTG layer used to define haplotypes.

Genename

e.g. ALDH2, HBB.

Chr

Chromosome number (1-22, X, Y).

GRCh38

1 = haplotype type matches GRCh38; 0 = does not match.

Chm13v2

1 = haplotype type matches CHM13v2; 0 = does not match.

Gpopname

Filter by superpopulation group.

Popname

Filter by population group.

Total

Minimum number of hits (≥).

Start

Start coordinate (GRCh38).

End

End coordinate (GRCh38).

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regionname	grch38/ chm13v2 1/0: The haplotype type is the same as GRCh38 0/1: The haplotype type is the same as CHM13v2 0/0: The haplotype type matches neither GRCh38 nor CHM13v2 1/1: The haplotype type is the same on both GRCh38 and CHM13v2	ahapid	alen	total	AFR	AMR	EAS	EUR	SAS	aseq	genename	chr	start	end
LINGO2_chr9_27932617_29218601	0/0	a0001	606	61	29	12	18	0	2	copy fasta	LINGO2	chr9	27932617	29218601
LINGO2_chr9_27932617_29218601	0/0	a0002	606	1	1	0	0	0	0	copy fasta	LINGO2	chr9	27932617	29218601
LINGO3_chr19_2282164_2313154	1/1	a0001	592	285	62	62	115	14	30	copy fasta	LINGO3	chr19	2282164	2313154
LINGO3_chr19_2282164_2313154	0/0	a0002	592	133	34	20	61	2	16	copy fasta	LINGO3	chr19	2282164	2313154
LINGO4_chr1_151795264_151810419	1/1	a0001	593	334	83	63	138	18	30	copy fasta	LINGO4	chr1	151795264	151810419
LINGO4_chr1_151795264_151810419	0/0	a0002	593	89	8	19	51	0	11	copy fasta	LINGO4	chr1	151795264	151810419
LINGO4_chr1_151795264_151810419	0/0	a0003	593	3	3	0	0	0	0	copy fasta	LINGO4	chr1	151795264	151810419
LINGO4_chr1_151795264_151810419	0/0	a0004	593	1	0	0	1	0	0	copy fasta	LINGO4	chr1	151795264	151810419
LINGO4_chr1_151795264_151810419	0/0	a0005	593	1	0	0	1	0	0	copy fasta	LINGO4	chr1	151795264	151810419
LINGO4_chr1_151795264_151810419	0/0	a0006	593	1	0	0	0	0	1	copy fasta	LINGO4	chr1	151795264	151810419
LINGO4_chr1_151795264_151810419	0/0	a0007	593	1	0	0	1	0	0	copy fasta	LINGO4	chr1	151795264	151810419
LINGO4_chr1_151795264_151810419	0/0	a0008	593	1	0	0	1	0	0	copy fasta	LINGO4	chr1	151795264	151810419
LINGO4_chr1_151795264_151810419	0/0	a0009	593	1	0	0	1	0	0	copy fasta	LINGO4	chr1	151795264	151810419
LINGO4_chr1_151795264_151810419	0/0	a0010	593	1	0	0	1	0	0	copy fasta	LINGO4	chr1	151795264	151810419
LINGO4_chr1_151795264_151810419	0/0	a0011	593	1	0	0	1	0	0	copy fasta	LINGO4	chr1	151795264	151810419
LINS1_chr15_100561924_100607184	0/1	a0001	757	172	51	45	38	6	31	copy fasta	LINS1	chr15	100561924	100607184
LINS1_chr15_100561924_100607184	0/0	a0002	757	94	9	17	50	6	12	copy fasta	LINS1	chr15	100561924	100607184
LINS1_chr15_100561924_100607184	1/0	a0003	757	71	8	2	58	0	2	copy fasta	LINS1	chr15	100561924	100607184
LINS1_chr15_100561924_100607184	0/0	a0004	757	51	6	7	38	0	0	copy fasta	LINS1	chr15	100561924	100607184
LINS1_chr15_100561924_100607184	0/0	a0005	757	19	6	4	6	0	3	copy fasta	LINS1	chr15	100561924	100607184
LINS1_chr15_100561924_100607184	0/0	a0006	757	8	6	2	0	0	0	copy fasta	LINS1	chr15	100561924	100607184
LINS1_chr15_100561924_100607184	0/0	a0007	757	5	5	0	0	0	0	copy fasta	LINS1	chr15	100561924	100607184
LINS1_chr15_100561924_100607184	0/0	a0008	757	3	3	0	0	0	0	copy fasta	LINS1	chr15	100561924	100607184
LINS1_chr15_100561924_100607184	0/0	a0009	757	2	2	0	0	0	0	copy fasta	LINS1	chr15	100561924	100607184
LINS1_chr15_100561924_100607184	0/0	a0010	757	1	1	0	0	0	0	copy fasta	LINS1	chr15	100561924	100607184
LINS1_chr15_100561924_100607184	0/0	a0011	757	1	0	1	0	0	0	copy fasta	LINS1	chr15	100561924	100607184
LINS1_chr15_100561924_100607184	0/0	a0012	757	1	0	0	1	0	0	copy fasta	LINS1	chr15	100561924	100607184
LINS1_chr15_100561924_100607184	0/0	a0013	757	1	1	0	0	0	0	copy fasta	LINS1	chr15	100561924	100607184
LINS1_chr15_100561924_100607184	0/0	a0014	757	1	0	0	1	0	0	copy fasta	LINS1	chr15	100561924	100607184
LIPA_chr10_89208572_89256775	1/0	a0001	399	222	51	37	100	8	25	copy fasta	LIPA	chr10	89208572	89256775
LIPA_chr10_89208572_89256775	0/1	a0002	399	105	11	26	44	3	20	copy fasta	LIPA	chr10	89208572	89256775
LIPA_chr10_89208572_89256775	0/0	a0003	399	53	25	5	17	1	5	copy fasta	LIPA	chr10	89208572	89256775
LIPA_chr10_89208572_89256775	0/0	a0004	399	2	0	0	2	0	0	copy fasta	LIPA	chr10	89208572	89256775
LIPA_chr10_89208572_89256775	0/0	a0005	399	1	0	0	1	0	0	copy fasta	LIPA	chr10	89208572	89256775
LIPA_chr10_89208572_89256775	0/0	a0006	399	1	1	0	0	0	0	copy fasta	LIPA	chr10	89208572	89256775
LIPC_chr15_58426991_58574844	0/1	a0001	499	197	55	28	88	4	21	copy fasta	LIPC	chr15	58426991	58574844
LIPC_chr15_58426991_58574844	0/0	a0002	499	79	13	34	5	12	15	copy fasta	LIPC	chr15	58426991	58574844
LIPC_chr15_58426991_58574844	0/0	a0003	499	37	4	1	25	0	7	copy fasta	LIPC	chr15	58426991	58574844
LIPC_chr15_58426991_58574844	0/0	a0004	499	23	8	0	13	0	2	copy fasta	LIPC	chr15	58426991	58574844
LIPC_chr15_58426991_58574844	0/0	a0005	499	11	2	0	8	0	1	copy fasta	LIPC	chr15	58426991	58574844
LIPC_chr15_58426991_58574844	1/0	a0006	499	5	4	0	0	0	0	copy fasta	LIPC	chr15	58426991	58574844
LIPC_chr15_58426991_58574844	0/0	a0007	499	3	0	0	3	0	0	copy fasta	LIPC	chr15	58426991	58574844
LIPC_chr15_58426991_58574844	0/0	a0008	64	1	0	1	0	0	0	copy fasta	LIPC	chr15	58426991	58574844
LIPC_chr15_58426991_58574844	0/0	a0009	499	1	0	0	1	0	0	copy fasta	LIPC	chr15	58426991	58574844
LIPC_chr15_58426991_58574844	0/0	a0010	499	1	0	0	1	0	0	copy fasta	LIPC	chr15	58426991	58574844
LIPE_chr19_42396514_42432388	1/1	a0001	1076	177	47	50	46	5	27	copy fasta	LIPE	chr19	42396514	42432388
LIPE_chr19_42396514_42432388	0/0	a0002	1076	16	15	1	0	0	0	copy fasta	LIPE	chr19	42396514	42432388
LIPE_chr19_42396514_42432388	0/0	a0003	1076	11	0	6	5	0	0	copy fasta	LIPE	chr19	42396514	42432388
LIPE_chr19_42396514_42432388	0/0	a0004	1076	7	6	1	0	0	0	copy fasta	LIPE	chr19	42396514	42432388
LIPE_chr19_42396514_42432388	0/0	a0005	1076	6	6	0	0	0	0	copy fasta	LIPE	chr19	42396514	42432388