JoGo: Joint Open Genome and Omics Platform

Search Genic Haplotype Catalog

Haplotypefield

Choose the ACTG layer used to define haplotypes.

Genename

e.g. ALDH2, HBB.

Chr

Chromosome number (1-22, X, Y).

GRCh38

1 = haplotype type matches GRCh38; 0 = does not match.

Chm13v2

1 = haplotype type matches CHM13v2; 0 = does not match.

Gpopname

Filter by superpopulation group.

Popname

Filter by population group.

Total

Minimum number of hits (≥).

Start

Start coordinate (GRCh38).

End

End coordinate (GRCh38).

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regionname	grch38/ chm13v2 1/0: The haplotype type is the same as GRCh38 0/1: The haplotype type is the same as CHM13v2 0/0: The haplotype type matches neither GRCh38 nor CHM13v2 1/1: The haplotype type is the same on both GRCh38 and CHM13v2	ahapid	alen	total	AFR	AMR	EAS	EUR	SAS	aseq	genename	chr	start	end
LNPEP_chr5_96931080_97042513	1/0	a0001	1025	242	67	46	103	6	19	copy fasta	LNPEP	chr5	96931080	97042513
LNPEP_chr5_96931080_97042513	0/0	a0002	1025	71	11	6	44	1	9	copy fasta	LNPEP	chr5	96931080	97042513
LNPEP_chr5_96931080_97042513	0/0	a0003	1025	17	0	7	0	6	4	copy fasta	LNPEP	chr5	96931080	97042513
LNPEP_chr5_96931080_97042513	0/1	a0004	1025	12	3	3	0	1	4	copy fasta	LNPEP	chr5	96931080	97042513
LNPEP_chr5_96931080_97042513	0/0	a0005	1025	3	0	0	3	0	0	copy fasta	LNPEP	chr5	96931080	97042513
LNPEP_chr5_96931080_97042513	0/0	a0006	1025	2	0	0	2	0	0	copy fasta	LNPEP	chr5	96931080	97042513
LNPEP_chr5_96931080_97042513	0/0	a0007	1025	2	1	1	0	0	0	copy fasta	LNPEP	chr5	96931080	97042513
LNPEP_chr5_96931080_97042513	0/0	a0008	1025	1	0	0	1	0	0	copy fasta	LNPEP	chr5	96931080	97042513
LNPEP_chr5_96931080_97042513	0/0	a0009	1025	1	0	1	0	0	0	copy fasta	LNPEP	chr5	96931080	97042513
LNPEP_chr5_96931080_97042513	0/0	a0010	1025	1	0	0	1	0	0	copy fasta	LNPEP	chr5	96931080	97042513
LNPK_chr2_175918882_176007267	1/1	a0001	428	359	77	68	162	13	37	copy fasta	LNPK	chr2	175918882	176007267
LNPK_chr2_175918882_176007267	0/0	a0002	428	6	0	3	0	1	2	copy fasta	LNPK	chr2	175918882	176007267
LNPK_chr2_175918882_176007267	0/0	a0003	428	1	0	0	0	0	1	copy fasta	LNPK	chr2	175918882	176007267
LNPK_chr2_175918882_176007267	0/0	a0004	428	1	0	1	0	0	0	copy fasta	LNPK	chr2	175918882	176007267
LNPK_chr2_175918882_176007267	0/0	a0005	428	1	1	0	0	0	0	copy fasta	LNPK	chr2	175918882	176007267
LNX1_chr4_53454301_53596486	1/1	a0001	728	342	86	59	149	11	35	copy fasta	LNX1	chr4	53454301	53596486
LNX1_chr4_53454301_53596486	0/0	a0002	728	2	0	0	2	0	0	copy fasta	LNX1	chr4	53454301	53596486
LNX1_chr4_53454301_53596486	0/0	a0003	728	2	2	0	0	0	0	copy fasta	LNX1	chr4	53454301	53596486
LNX1_chr4_53454301_53596486	0/0	a0004	728	1	0	0	0	1	0	copy fasta	LNX1	chr4	53454301	53596486
LNX1_chr4_53454301_53596486	0/0	a0005	728	1	0	0	1	0	0	copy fasta	LNX1	chr4	53454301	53596486
LNX1_chr4_53454301_53596486	0/0	a0006	728	1	0	0	1	0	0	copy fasta	LNX1	chr4	53454301	53596486
LNX1_chr4_53454301_53596486	0/0	a0007	728	1	0	0	0	0	1	copy fasta	LNX1	chr4	53454301	53596486
LNX1_chr4_53454301_53596486	0/0	a0008	728	1	0	0	1	0	0	copy fasta	LNX1	chr4	53454301	53596486
LNX1_chr4_53454301_53596486	0/0	a0009	728	1	1	0	0	0	0	copy fasta	LNX1	chr4	53454301	53596486
LNX1_chr4_53454301_53596486	0/0	a0010	728	1	0	1	0	0	0	copy fasta	LNX1	chr4	53454301	53596486
LNX1_chr4_53454301_53596486	0/0	a0011	728	1	0	0	0	0	1	copy fasta	LNX1	chr4	53454301	53596486
LNX1_chr4_53454301_53596486	0/0	a0012	728	1	0	0	0	0	1	copy fasta	LNX1	chr4	53454301	53596486
LNX1_chr4_53454301_53596486	0/0	a0013	728	1	1	0	0	0	0	copy fasta	LNX1	chr4	53454301	53596486
LNX2_chr13_27540913_27625529	0/1	a0001	690	184	55	27	70	8	23	copy fasta	LNX2	chr13	27540913	27625529
LNX2_chr13_27540913_27625529	1/0	a0002	690	169	23	36	82	7	20	copy fasta	LNX2	chr13	27540913	27625529
LNX2_chr13_27540913_27625529	0/0	a0003	690	2	1	1	0	0	0	copy fasta	LNX2	chr13	27540913	27625529
LNX2_chr13_27540913_27625529	0/0	a0004	690	1	0	0	0	1	0	copy fasta	LNX2	chr13	27540913	27625529
LNX2_chr13_27540913_27625529	0/0	a0005	690	1	0	0	0	0	1	copy fasta	LNX2	chr13	27540913	27625529
LNX2_chr13_27540913_27625529	0/0	a0006	690	1	1	0	0	0	0	copy fasta	LNX2	chr13	27540913	27625529
LOC100505841_chr5_122155176_122187658	1/1	a0001	108	221	72	44	60	10	33	copy fasta	LOC100505841	chr5	122155176	122187658
LOC100505841_chr5_122155176_122187658	0/0	a0002	108	98	10	23	50	4	11	copy fasta	LOC100505841	chr5	122155176	122187658
LOC100505841_chr5_122155176_122187658	0/0	a0003	108	16	12	2	0	0	2	copy fasta	LOC100505841	chr5	122155176	122187658
LOC100505841_chr5_122155176_122187658	0/0	a0004	108	3	2	1	0	0	0	copy fasta	LOC100505841	chr5	122155176	122187658
LOC101059915_chrX_71662546_71676527	1/1	a0001	518	255	52	46	123	12	20	copy fasta	LOC101059915	chrX	71662546	71676527
LOC101059915_chrX_71662546_71676527	0/0	a0002	518	65	20	3	31	1	10	copy fasta	LOC101059915	chrX	71662546	71676527
LOC101059915_chrX_71662546_71676527	0/0	a0003	518	8	0	8	0	0	0	copy fasta	LOC101059915	chrX	71662546	71676527
LOC101059915_chrX_71662546_71676527	0/0	a0004	106	4	1	2	1	0	0	copy fasta	LOC101059915	chrX	71662546	71676527
LOC101059915_chrX_71662546_71676527	0/0	a0005	5	1	0	0	1	0	0	copy fasta	LOC101059915	chrX	71662546	71676527
LOC101059915_chrX_71662546_71676527	0/0	a0006	518	1	0	1	0	0	0	copy fasta	LOC101059915	chrX	71662546	71676527
LOC101059915_chrX_71662546_71676527	0/0	a0007	518	1	1	0	0	0	0	copy fasta	LOC101059915	chrX	71662546	71676527
LOC101059915_chrX_71662546_71676527	0/0	a0008	34	1	0	1	0	0	0	copy fasta	LOC101059915	chrX	71662546	71676527
LOC101059915_chrX_71662546_71676527	0/0	a0009	51	1	0	0	1	0	0	copy fasta	LOC101059915	chrX	71662546	71676527
LOC101059915_chrX_71662546_71676527	0/0	a0010	518	1	0	0	1	0	0	copy fasta	LOC101059915	chrX	71662546	71676527
LOC101059915_chrX_71662546_71676527	0/0	a0011	518	1	0	0	1	0	0	copy fasta	LOC101059915	chrX	71662546	71676527
LOC101059915_chrX_71662546_71676527	0/0	a0012	518	1	0	0	1	0	0	copy fasta	LOC101059915	chrX	71662546	71676527