JoGo: Joint Open Genome and Omics Platform

Search Genic Haplotype Catalog

Haplotypefield

Choose the ACTG layer used to define haplotypes.

Genename

e.g. ALDH2, HBB.

Chr

Chromosome number (1-22, X, Y).

GRCh38

1 = haplotype type matches GRCh38; 0 = does not match.

Chm13v2

1 = haplotype type matches CHM13v2; 0 = does not match.

Gpopname

Filter by superpopulation group.

Popname

Filter by population group.

Total

Minimum number of hits (≥).

Start

Start coordinate (GRCh38).

End

End coordinate (GRCh38).

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regionname	grch38/ chm13v2 1/0: The haplotype type is the same as GRCh38 0/1: The haplotype type is the same as CHM13v2 0/0: The haplotype type matches neither GRCh38 nor CHM13v2 1/1: The haplotype type is the same on both GRCh38 and CHM13v2	ahapid	alen	total	AFR	AMR	EAS	EUR	SAS	aseq	genename	chr	start	end
LPAR5_chr12_6613835_6640959	1/1	a0001	372	393	87	77	169	14	44	copy fasta	LPAR5	chr12	6613835	6640959
LPAR5_chr12_6613835_6640959	0/0	a0002	372	5	2	1	1	0	1	copy fasta	LPAR5	chr12	6613835	6640959
LPAR5_chr12_6613835_6640959	0/0	a0003	372	4	0	0	4	0	0	copy fasta	LPAR5	chr12	6613835	6640959
LPAR5_chr12_6613835_6640959	0/0	a0004	372	1	0	0	1	0	0	copy fasta	LPAR5	chr12	6613835	6640959
LPAR5_chr12_6613835_6640959	0/0	a0005	372	1	0	0	1	0	0	copy fasta	LPAR5	chr12	6613835	6640959
LPAR5_chr12_6613835_6640959	0/0	a0006	372	1	0	0	0	0	1	copy fasta	LPAR5	chr12	6613835	6640959
LPAR5_chr12_6613835_6640959	0/0	a0007	372	1	1	0	0	0	0	copy fasta	LPAR5	chr12	6613835	6640959
LPAR6_chr13_48406138_48418113	1/1	a0001	344	400	91	74	185	18	30	copy fasta	LPAR6	chr13	48406138	48418113
LPAR6_chr13_48406138_48418113	0/0	a0002	344	2	0	0	2	0	0	copy fasta	LPAR6	chr13	48406138	48418113
LPAR6_chr13_48406138_48418113	0/0	a0003	344	1	1	0	0	0	0	copy fasta	LPAR6	chr13	48406138	48418113
LPAR6_chr13_48406138_48418113	0/0	a0004	344	1	0	0	1	0	0	copy fasta	LPAR6	chr13	48406138	48418113
LPA_chr6_160526482_160669275	1/0	a0001	2040	37	4	10	10	2	10	copy fasta	LPA	chr6	160526482	160669275
LPA_chr6_160526482_160669275	0/0	a0002	2040	25	8	0	11	2	4	copy fasta	LPA	chr6	160526482	160669275
LPA_chr6_160526482_160669275	0/1	a0003	2040	24	9	4	3	3	4	copy fasta	LPA	chr6	160526482	160669275
LPA_chr6_160526482_160669275	0/0	a0004	2040	12	3	2	4	0	3	copy fasta	LPA	chr6	160526482	160669275
LPA_chr6_160526482_160669275	0/0	a0005	2040	8	4	0	2	0	2	copy fasta	LPA	chr6	160526482	160669275
LPA_chr6_160526482_160669275	0/0	a0006	2040	6	6	0	0	0	0	copy fasta	LPA	chr6	160526482	160669275
LPA_chr6_160526482_160669275	0/0	a0007	2040	3	0	1	0	1	1	copy fasta	LPA	chr6	160526482	160669275
LPA_chr6_160526482_160669275	0/0	a0008	2040	3	0	0	2	0	1	copy fasta	LPA	chr6	160526482	160669275
LPA_chr6_160526482_160669275	0/0	a0009	2040	3	3	0	0	0	0	copy fasta	LPA	chr6	160526482	160669275
LPA_chr6_160526482_160669275	0/0	a0010	2040	2	2	0	0	0	0	copy fasta	LPA	chr6	160526482	160669275
LPA_chr6_160526482_160669275	0/0	a0011	2040	2	0	1	0	1	0	copy fasta	LPA	chr6	160526482	160669275
LPA_chr6_160526482_160669275	0/0	a0012	2040	1	1	0	0	0	0	copy fasta	LPA	chr6	160526482	160669275
LPA_chr6_160526482_160669275	0/0	a0013	2040	1	1	0	0	0	0	copy fasta	LPA	chr6	160526482	160669275
LPA_chr6_160526482_160669275	0/0	a0014	2040	1	1	0	0	0	0	copy fasta	LPA	chr6	160526482	160669275
LPA_chr6_160526482_160669275	0/0	a0015	2040	1	0	1	0	0	0	copy fasta	LPA	chr6	160526482	160669275
LPA_chr6_160526482_160669275	0/0	a0016	2040	1	0	1	0	0	0	copy fasta	LPA	chr6	160526482	160669275
LPA_chr6_160526482_160669275	0/0	a0017	2040	1	1	0	0	0	0	copy fasta	LPA	chr6	160526482	160669275
LPA_chr6_160526482_160669275	0/0	a0018	2040	1	1	0	0	0	0	copy fasta	LPA	chr6	160526482	160669275
LPA_chr6_160526482_160669275	0/0	a0019	2040	1	1	0	0	0	0	copy fasta	LPA	chr6	160526482	160669275
LPA_chr6_160526482_160669275	0/0	a0020	2040	1	0	1	0	0	0	copy fasta	LPA	chr6	160526482	160669275
LPA_chr6_160526482_160669275	0/0	a0021	2040	1	1	0	0	0	0	copy fasta	LPA	chr6	160526482	160669275
LPA_chr6_160526482_160669275	0/0	a0022	2040	1	1	0	0	0	0	copy fasta	LPA	chr6	160526482	160669275
LPA_chr6_160526482_160669275	0/0	a0023	2040	1	1	0	0	0	0	copy fasta	LPA	chr6	160526482	160669275
LPA_chr6_160526482_160669275	0/0	a0024	2040	1	0	1	0	0	0	copy fasta	LPA	chr6	160526482	160669275
LPA_chr6_160526482_160669275	0/0	a0025	2040	1	1	0	0	0	0	copy fasta	LPA	chr6	160526482	160669275
LPA_chr6_160526482_160669275	0/0	a0026	2040	1	1	0	0	0	0	copy fasta	LPA	chr6	160526482	160669275
LPA_chr6_160526482_160669275	0/0	a0027	2040	1	0	0	1	0	0	copy fasta	LPA	chr6	160526482	160669275
LPA_chr6_160526482_160669275	0/0	a0028	2040	1	0	0	0	1	0	copy fasta	LPA	chr6	160526482	160669275
LPA_chr6_160526482_160669275	0/0	a0029	2040	1	0	0	1	0	0	copy fasta	LPA	chr6	160526482	160669275
LPA_chr6_160526482_160669275	0/0	a0030	2040	1	1	0	0	0	0	copy fasta	LPA	chr6	160526482	160669275
LPA_chr6_160526482_160669275	0/0	a0031	2040	1	0	0	0	0	1	copy fasta	LPA	chr6	160526482	160669275
LPA_chr6_160526482_160669275	0/0	a0032	1470	1	1	0	0	0	0	copy fasta	LPA	chr6	160526482	160669275
LPA_chr6_160526482_160669275	0/0	a0033	241	1	1	0	0	0	0	copy fasta	LPA	chr6	160526482	160669275
LPA_chr6_160526482_160669275	0/0	a0034	2040	1	1	0	0	0	0	copy fasta	LPA	chr6	160526482	160669275
LPCAT1_chr5_1456427_1528960	1/1	a0001	534	328	83	54	146	11	32	copy fasta	LPCAT1	chr5	1456427	1528960
LPCAT1_chr5_1456427_1528960	0/0	a0002	534	47	8	17	15	1	6	copy fasta	LPCAT1	chr5	1456427	1528960
LPCAT1_chr5_1456427_1528960	0/0	a0003	534	6	0	1	0	4	1	copy fasta	LPCAT1	chr5	1456427	1528960
LPCAT1_chr5_1456427_1528960	0/0	a0004	534	2	2	0	0	0	0	copy fasta	LPCAT1	chr5	1456427	1528960
LPCAT1_chr5_1456427_1528960	0/0	a0005	534	1	0	0	1	0	0	copy fasta	LPCAT1	chr5	1456427	1528960