Joint Open Genome and Omics Platform (JoGo)

Search Genic Haplotype Catalog

Haplotypefield

Choose the ACTG layer used to define haplotypes.

Genename

e.g. ALDH2, HBB.

Chr

Chromosome number (1-22, X, Y).

GRCh38

1 = haplotype type matches GRCh38; 0 = does not match.

Chm13v2

1 = haplotype type matches CHM13v2; 0 = does not match.

Gpopname

Filter by superpopulation group.

Popname

Filter by population group.

Total

Minimum number of hits (≥).

Start

Start coordinate (GRCh38).

End

End coordinate (GRCh38).

Sort By

Choose a field to sort by.

Order by

Ascending / Descending.

Show

Results per page.

regionname	grch38/ chm13v2 1/0: The haplotype type is the same as GRCh38 0/1: The haplotype type is the same as CHM13v2 0/0: The haplotype type matches neither GRCh38 nor CHM13v2 1/1: The haplotype type is the same on both GRCh38 and CHM13v2	ahapid	alen	total	AFR	AMR	EAS	EUR	SAS	aseq	genename	chr	start	end
ANKRD36_chr2_97108153_97269521	0/0	a0016	382	3	0	0	0	0	3	copy fasta	ANKRD36	chr2	97108153	97269521
ANKRD36_chr2_97108153_97269521	0/0	a0017	414	3	0	2	0	0	1	copy fasta	ANKRD36	chr2	97108153	97269521
ANKRD36_chr2_97108153_97269521	0/0	a0018	1881	3	0	0	3	0	0	copy fasta	ANKRD36	chr2	97108153	97269521
ANKRD36_chr2_97108153_97269521	0/0	a0019	370	2	0	0	2	0	0	copy fasta	ANKRD36	chr2	97108153	97269521
ANKRD36_chr2_97108153_97269521	0/0	a0020	1881	2	2	0	0	0	0	copy fasta	ANKRD36	chr2	97108153	97269521
ANKRD36_chr2_97108153_97269521	0/0	a0021	1881	2	2	0	0	0	0	copy fasta	ANKRD36	chr2	97108153	97269521
ANKRD36_chr2_97108153_97269521	0/0	a0022	1914	2	0	0	2	0	0	copy fasta	ANKRD36	chr2	97108153	97269521
ANKRD36_chr2_97108153_97269521	0/0	a0023	1903	2	0	0	2	0	0	copy fasta	ANKRD36	chr2	97108153	97269521
ANKRD36_chr2_97108153_97269521	0/0	a0024	1915	1	1	0	0	0	0	copy fasta	ANKRD36	chr2	97108153	97269521
ANKRD36_chr2_97108153_97269521	0/0	a0025	1881	1	0	1	0	0	0	copy fasta	ANKRD36	chr2	97108153	97269521
ANKRD36_chr2_97108153_97269521	0/0	a0026	1915	1	0	0	0	0	1	copy fasta	ANKRD36	chr2	97108153	97269521
ANKRD36_chr2_97108153_97269521	0/0	a0027	414	1	0	0	0	0	1	copy fasta	ANKRD36	chr2	97108153	97269521
ANKRD36_chr2_97108153_97269521	0/0	a0028	173	1	0	1	0	0	0	copy fasta	ANKRD36	chr2	97108153	97269521
ANKRD36_chr2_97108153_97269521	0/0	a0029	1915	1	0	1	0	0	0	copy fasta	ANKRD36	chr2	97108153	97269521
ANKRD36_chr2_97108153_97269521	0/0	a0030	1881	1	1	0	0	0	0	copy fasta	ANKRD36	chr2	97108153	97269521
ANKRD36_chr2_97108153_97269521	0/0	a0031	1639	1	0	0	1	0	0	copy fasta	ANKRD36	chr2	97108153	97269521
ANKRD36_chr2_97108153_97269521	0/0	a0032	1881	1	0	0	0	0	1	copy fasta	ANKRD36	chr2	97108153	97269521
ANKRD36_chr2_97108153_97269521	0/0	a0033	1711	1	0	0	1	0	0	copy fasta	ANKRD36	chr2	97108153	97269521
ANKRD36_chr2_97108153_97269521	0/0	a0034	1639	1	0	0	1	0	0	copy fasta	ANKRD36	chr2	97108153	97269521
ANKRD36_chr2_97108153_97269521	0/0	a0035	1847	1	0	0	0	0	1	copy fasta	ANKRD36	chr2	97108153	97269521
ANKRD36_chr2_97108153_97269521	0/0	a0036	1915	1	0	1	0	0	0	copy fasta	ANKRD36	chr2	97108153	97269521
ANKRD36_chr2_97108153_97269521	0/0	a0037	1915	1	1	0	0	0	0	copy fasta	ANKRD36	chr2	97108153	97269521
ANKRD36_chr2_97108153_97269521	0/0	a0038	1639	1	0	0	1	0	0	copy fasta	ANKRD36	chr2	97108153	97269521
ANKRD36_chr2_97108153_97269521	1/0	a0039	1915	1	0	0	0	0	0	copy fasta	ANKRD36	chr2	97108153	97269521
ANKRD36_chr2_97108153_97269521	0/0	a0040	1430	1	0	1	0	0	0	copy fasta	ANKRD36	chr2	97108153	97269521
ANKRD36_chr2_97108153_97269521	0/0	a0041	1915	1	0	0	1	0	0	copy fasta	ANKRD36	chr2	97108153	97269521
ANKRD36_chr2_97108153_97269521	0/0	a0042	1915	1	1	0	0	0	0	copy fasta	ANKRD36	chr2	97108153	97269521
ANKRD36_chr2_97108153_97269521	0/0	a0043	1881	1	1	0	0	0	0	copy fasta	ANKRD36	chr2	97108153	97269521
ANKRD36_chr2_97108153_97269521	0/0	a0044	1881	1	1	0	0	0	0	copy fasta	ANKRD36	chr2	97108153	97269521
ANKRD36_chr2_97108153_97269521	0/0	a0045	1915	1	0	0	0	0	1	copy fasta	ANKRD36	chr2	97108153	97269521
ANKRD36_chr2_97108153_97269521	0/0	a0046	1605	1	0	0	1	0	0	copy fasta	ANKRD36	chr2	97108153	97269521
ANKRD36_chr2_97108153_97269521	0/0	a0047	1915	1	1	0	0	0	0	copy fasta	ANKRD36	chr2	97108153	97269521
ANKRD36_chr2_97108153_97269521	0/0	a0048	1914	1	0	0	1	0	0	copy fasta	ANKRD36	chr2	97108153	97269521
ANKRD36_chr2_97108153_97269521	0/0	a0049	1915	1	0	1	0	0	0	copy fasta	ANKRD36	chr2	97108153	97269521
ANKRD36_chr2_97108153_97269521	0/0	a0050	1915	1	0	0	1	0	0	copy fasta	ANKRD36	chr2	97108153	97269521
ANKRD36_chr2_97108153_97269521	0/0	a0051	1915	1	0	0	0	0	1	copy fasta	ANKRD36	chr2	97108153	97269521
ANKRD36_chr2_97108153_97269521	0/0	a0052	1903	1	0	0	1	0	0	copy fasta	ANKRD36	chr2	97108153	97269521
ANKRD37_chr4_185391841_185405241	1/1	a0001	159	273	75	59	90	11	36	copy fasta	ANKRD37	chr4	185391841	185405241
ANKRD37_chr4_185391841_185405241	0/0	a0002	159	41	16	1	17	1	6	copy fasta	ANKRD37	chr4	185391841	185405241
ANKRD37_chr4_185391841_185405241	0/0	a0003	159	2	0	0	0	0	2	copy fasta	ANKRD37	chr4	185391841	185405241
ANKRD37_chr4_185391841_185405241	0/0	a0004	159	1	1	0	0	0	0	copy fasta	ANKRD37	chr4	185391841	185405241
ANKRD37_chr4_185391841_185405241	0/0	a0005	159	1	0	0	1	0	0	copy fasta	ANKRD37	chr4	185391841	185405241
ANKRD39_chr2_96842990_96863016	1/1	a0001	183	309	95	61	114	8	29	copy fasta	ANKRD39	chr2	96842990	96863016
ANKRD39_chr2_96842990_96863016	0/0	a0002	183	2	0	0	2	0	0	copy fasta	ANKRD39	chr2	96842990	96863016
ANKRD39_chr2_96842990_96863016	0/0	a0003	183	1	1	0	0	0	0	copy fasta	ANKRD39	chr2	96842990	96863016
ANKRD39_chr2_96842990_96863016	0/0	a0004	183	1	0	1	0	0	0	copy fasta	ANKRD39	chr2	96842990	96863016
ANKRD39_chr2_96842990_96863016	0/0	a0005	183	1	0	0	0	0	1	copy fasta	ANKRD39	chr2	96842990	96863016
ANKRD40CL_chr17_50756030_50772518	1/1	a0001	114	444	90	76	215	15	46	copy fasta	ANKRD40CL	chr17	50756030	50772518
ANKRD40CL_chr17_50756030_50772518	0/0	a0002	7	9	8	1	0	0	0	copy fasta	ANKRD40CL	chr17	50756030	50772518
ANKRD40CL_chr17_50756030_50772518	0/0	a0003	52	2	0	1	0	1	0	copy fasta	ANKRD40CL	chr17	50756030	50772518