JoGo: Joint Open Genome and Omics Platform

Search Genic Haplotype Catalog

Haplotypefield

Choose the ACTG layer used to define haplotypes.

Genename

e.g. ALDH2, HBB.

Chr

Chromosome number (1-22, X, Y).

GRCh38

1 = haplotype type matches GRCh38; 0 = does not match.

Chm13v2

1 = haplotype type matches CHM13v2; 0 = does not match.

Gpopname

Filter by superpopulation group.

Popname

Filter by population group.

Total

Minimum number of hits (≥).

Start

Start coordinate (GRCh38).

End

End coordinate (GRCh38).

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regionname	grch38/ chm13v2 1/0: The haplotype type is the same as GRCh38 0/1: The haplotype type is the same as CHM13v2 0/0: The haplotype type matches neither GRCh38 nor CHM13v2 1/1: The haplotype type is the same on both GRCh38 and CHM13v2	ahapid	alen	total	AFR	AMR	EAS	EUR	SAS	aseq	genename	chr	start	end
MAP3K15_chrX_19355059_19520508	0/0	a0013	1313	1	1	0	0	0	0	copy fasta	MAP3K15	chrX	19355059	19520508
MAP3K15_chrX_19355059_19520508	0/0	a0014	1313	1	0	0	1	0	0	copy fasta	MAP3K15	chrX	19355059	19520508
MAP3K15_chrX_19355059_19520508	0/0	a0015	314	1	0	0	1	0	0	copy fasta	MAP3K15	chrX	19355059	19520508
MAP3K15_chrX_19355059_19520508	0/0	a0016	1313	1	0	0	0	0	1	copy fasta	MAP3K15	chrX	19355059	19520508
MAP3K15_chrX_19355059_19520508	0/0	a0017	68	1	0	0	0	0	1	copy fasta	MAP3K15	chrX	19355059	19520508
MAP3K15_chrX_19355059_19520508	0/0	a0018	1326	1	0	0	1	0	0	copy fasta	MAP3K15	chrX	19355059	19520508
MAP3K19_chr2_134959491_135052447	1/1	a0001	1328	192	54	39	62	4	31	copy fasta	MAP3K19	chr2	134959491	135052447
MAP3K19_chr2_134959491_135052447	0/0	a0002	1328	49	3	13	28	2	3	copy fasta	MAP3K19	chr2	134959491	135052447
MAP3K19_chr2_134959491_135052447	0/0	a0003	1328	46	4	3	39	0	0	copy fasta	MAP3K19	chr2	134959491	135052447
MAP3K19_chr2_134959491_135052447	0/0	a0004	1328	6	1	0	5	0	0	copy fasta	MAP3K19	chr2	134959491	135052447
MAP3K19_chr2_134959491_135052447	0/0	a0005	1328	5	0	0	5	0	0	copy fasta	MAP3K19	chr2	134959491	135052447
MAP3K19_chr2_134959491_135052447	0/0	a0006	1328	5	5	0	0	0	0	copy fasta	MAP3K19	chr2	134959491	135052447
MAP3K19_chr2_134959491_135052447	0/0	a0007	1328	4	3	1	0	0	0	copy fasta	MAP3K19	chr2	134959491	135052447
MAP3K19_chr2_134959491_135052447	0/0	a0008	1328	3	0	0	0	0	3	copy fasta	MAP3K19	chr2	134959491	135052447
MAP3K19_chr2_134959491_135052447	0/0	a0009	1328	3	0	0	3	0	0	copy fasta	MAP3K19	chr2	134959491	135052447
MAP3K19_chr2_134959491_135052447	0/0	a0010	1328	2	0	0	1	0	1	copy fasta	MAP3K19	chr2	134959491	135052447
MAP3K19_chr2_134959491_135052447	0/0	a0011	1328	2	1	1	0	0	0	copy fasta	MAP3K19	chr2	134959491	135052447
MAP3K19_chr2_134959491_135052447	0/0	a0012	1328	2	0	0	2	0	0	copy fasta	MAP3K19	chr2	134959491	135052447
MAP3K19_chr2_134959491_135052447	0/0	a0013	1328	2	2	0	0	0	0	copy fasta	MAP3K19	chr2	134959491	135052447
MAP3K19_chr2_134959491_135052447	0/0	a0014	379	1	0	0	1	0	0	copy fasta	MAP3K19	chr2	134959491	135052447
MAP3K19_chr2_134959491_135052447	0/0	a0015	1328	1	0	0	1	0	0	copy fasta	MAP3K19	chr2	134959491	135052447
MAP3K19_chr2_134959491_135052447	0/0	a0016	1328	1	0	0	0	0	1	copy fasta	MAP3K19	chr2	134959491	135052447
MAP3K19_chr2_134959491_135052447	0/0	a0017	1328	1	0	0	0	0	1	copy fasta	MAP3K19	chr2	134959491	135052447
MAP3K19_chr2_134959491_135052447	0/0	a0018	1328	1	0	0	1	0	0	copy fasta	MAP3K19	chr2	134959491	135052447
MAP3K19_chr2_134959491_135052447	0/0	a0019	1328	1	1	0	0	0	0	copy fasta	MAP3K19	chr2	134959491	135052447
MAP3K19_chr2_134959491_135052447	0/0	a0020	1328	1	1	0	0	0	0	copy fasta	MAP3K19	chr2	134959491	135052447
MAP3K19_chr2_134959491_135052447	0/0	a0021	1328	1	0	1	0	0	0	copy fasta	MAP3K19	chr2	134959491	135052447
MAP3K19_chr2_134959491_135052447	0/0	a0022	1328	1	0	0	1	0	0	copy fasta	MAP3K19	chr2	134959491	135052447
MAP3K19_chr2_134959491_135052447	0/0	a0023	1328	1	1	0	0	0	0	copy fasta	MAP3K19	chr2	134959491	135052447
MAP3K19_chr2_134959491_135052447	0/0	a0024	1328	1	1	0	0	0	0	copy fasta	MAP3K19	chr2	134959491	135052447
MAP3K19_chr2_134959491_135052447	0/0	a0025	1328	1	1	0	0	0	0	copy fasta	MAP3K19	chr2	134959491	135052447
MAP3K19_chr2_134959491_135052447	0/0	a0026	1328	1	0	0	1	0	0	copy fasta	MAP3K19	chr2	134959491	135052447
MAP3K1_chr5_56810549_56901152	0/0	a0001	1511	149	42	30	51	8	18	copy fasta	MAP3K1	chr5	56810549	56901152
MAP3K1_chr5_56810549_56901152	1/0	a0002	1512	133	20	25	73	2	12	copy fasta	MAP3K1	chr5	56810549	56901152
MAP3K1_chr5_56810549_56901152	0/0	a0003	1511	86	18	9	44	2	13	copy fasta	MAP3K1	chr5	56810549	56901152
MAP3K1_chr5_56810549_56901152	0/0	a0004	1511	4	4	0	0	0	0	copy fasta	MAP3K1	chr5	56810549	56901152
MAP3K1_chr5_56810549_56901152	0/0	a0005	1511	4	0	3	1	0	0	copy fasta	MAP3K1	chr5	56810549	56901152
MAP3K1_chr5_56810549_56901152	0/1	a0006	1511	2	0	1	0	0	0	copy fasta	MAP3K1	chr5	56810549	56901152
MAP3K1_chr5_56810549_56901152	0/0	a0007	1512	1	0	0	1	0	0	copy fasta	MAP3K1	chr5	56810549	56901152
MAP3K1_chr5_56810549_56901152	0/0	a0008	1512	1	0	0	1	0	0	copy fasta	MAP3K1	chr5	56810549	56901152
MAP3K1_chr5_56810549_56901152	0/0	a0009	1511	1	0	0	0	0	1	copy fasta	MAP3K1	chr5	56810549	56901152
MAP3K1_chr5_56810549_56901152	0/0	a0010	1512	1	0	0	1	0	0	copy fasta	MAP3K1	chr5	56810549	56901152
MAP3K1_chr5_56810549_56901152	0/0	a0011	1511	1	0	0	0	0	1	copy fasta	MAP3K1	chr5	56810549	56901152
MAP3K1_chr5_56810549_56901152	0/0	a0012	1512	1	0	0	0	0	1	copy fasta	MAP3K1	chr5	56810549	56901152
MAP3K20_chr2_173070846_173273015	1/1	a0001	800	223	57	38	98	4	24	copy fasta	MAP3K20	chr2	173070846	173273015
MAP3K20_chr2_173070846_173273015	0/0	a0002	800	59	1	19	24	3	12	copy fasta	MAP3K20	chr2	173070846	173273015
MAP3K20_chr2_173070846_173273015	0/0	a0003	800	33	7	11	8	1	6	copy fasta	MAP3K20	chr2	173070846	173273015
MAP3K20_chr2_173070846_173273015	0/0	a0004	800	6	6	0	0	0	0	copy fasta	MAP3K20	chr2	173070846	173273015
MAP3K20_chr2_173070846_173273015	0/0	a0005	800	6	6	0	0	0	0	copy fasta	MAP3K20	chr2	173070846	173273015
MAP3K20_chr2_173070846_173273015	0/0	a0006	800	4	4	0	0	0	0	copy fasta	MAP3K20	chr2	173070846	173273015