JoGo: Joint Open Genome and Omics Platform

Search Genic Haplotype Catalog

Haplotypefield

Choose the ACTG layer used to define haplotypes.

Genename

e.g. ALDH2, HBB.

Chr

Chromosome number (1-22, X, Y).

GRCh38

1 = haplotype type matches GRCh38; 0 = does not match.

Chm13v2

1 = haplotype type matches CHM13v2; 0 = does not match.

Gpopname

Filter by superpopulation group.

Popname

Filter by population group.

Total

Minimum number of hits (≥).

Start

Start coordinate (GRCh38).

End

End coordinate (GRCh38).

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regionname	grch38/ chm13v2 1/0: The haplotype type is the same as GRCh38 0/1: The haplotype type is the same as CHM13v2 0/0: The haplotype type matches neither GRCh38 nor CHM13v2 1/1: The haplotype type is the same on both GRCh38 and CHM13v2	ahapid	alen	total	AFR	AMR	EAS	EUR	SAS	aseq	genename	chr	start	end
MATN4_chr20_45288450_45313299	0/0	a0010	168	1	0	1	0	0	0	copy fasta	MATN4	chr20	45288450	45313299
MATN4_chr20_45288450_45313299	0/0	a0011	581	1	1	0	0	0	0	copy fasta	MATN4	chr20	45288450	45313299
MATN4_chr20_45288450_45313299	0/0	a0012	581	1	1	0	0	0	0	copy fasta	MATN4	chr20	45288450	45313299
MATN4_chr20_45288450_45313299	0/0	a0013	581	1	0	0	1	0	0	copy fasta	MATN4	chr20	45288450	45313299
MATN4_chr20_45288450_45313299	0/0	a0014	581	1	1	0	0	0	0	copy fasta	MATN4	chr20	45288450	45313299
MATN4_chr20_45288450_45313299	0/0	a0015	581	1	0	0	1	0	0	copy fasta	MATN4	chr20	45288450	45313299
MATN4_chr20_45288450_45313299	0/0	a0016	581	1	0	1	0	0	0	copy fasta	MATN4	chr20	45288450	45313299
MATN4_chr20_45288450_45313299	0/0	a0017	581	1	0	1	0	0	0	copy fasta	MATN4	chr20	45288450	45313299
MATN4_chr20_45288450_45313299	0/0	a0018	581	1	0	0	1	0	0	copy fasta	MATN4	chr20	45288450	45313299
MATR3_chr5_139288740_139336677	1/1	a0001	847	282	62	48	116	16	38	copy fasta	MATR3	chr5	139288740	139336677
MAU2_chr19_19315829_19363754	1/1	a0001	613	342	92	64	127	13	44	copy fasta	MAU2	chr19	19315829	19363754
MAU2_chr19_19315829_19363754	0/0	a0002	608	1	0	0	0	1	0	copy fasta	MAU2	chr19	19315829	19363754
MAU2_chr19_19315829_19363754	0/0	a0003	613	1	0	0	1	0	0	copy fasta	MAU2	chr19	19315829	19363754
MAVS_chr20_3841834_3881118	1/1	a0001	540	182	40	36	77	7	20	copy fasta	MAVS	chr20	3841834	3881118
MAVS_chr20_3841834_3881118	0/0	a0002	540	122	3	14	93	3	9	copy fasta	MAVS	chr20	3841834	3881118
MAVS_chr20_3841834_3881118	0/0	a0003	540	36	11	6	6	2	11	copy fasta	MAVS	chr20	3841834	3881118
MAVS_chr20_3841834_3881118	0/0	a0004	540	21	0	3	14	1	3	copy fasta	MAVS	chr20	3841834	3881118
MAVS_chr20_3841834_3881118	0/0	a0005	540	13	1	9	0	2	1	copy fasta	MAVS	chr20	3841834	3881118
MAVS_chr20_3841834_3881118	0/0	a0006	540	10	9	1	0	0	0	copy fasta	MAVS	chr20	3841834	3881118
MAVS_chr20_3841834_3881118	0/0	a0007	540	8	7	1	0	0	0	copy fasta	MAVS	chr20	3841834	3881118
MAVS_chr20_3841834_3881118	0/0	a0008	541	5	5	0	0	0	0	copy fasta	MAVS	chr20	3841834	3881118
MAVS_chr20_3841834_3881118	0/0	a0009	541	4	2	2	0	0	0	copy fasta	MAVS	chr20	3841834	3881118
MAVS_chr20_3841834_3881118	0/0	a0010	540	4	3	1	0	0	0	copy fasta	MAVS	chr20	3841834	3881118
MAVS_chr20_3841834_3881118	0/0	a0011	540	3	0	0	3	0	0	copy fasta	MAVS	chr20	3841834	3881118
MAVS_chr20_3841834_3881118	0/0	a0012	540	3	3	0	0	0	0	copy fasta	MAVS	chr20	3841834	3881118
MAVS_chr20_3841834_3881118	0/0	a0013	540	2	0	0	2	0	0	copy fasta	MAVS	chr20	3841834	3881118
MAVS_chr20_3841834_3881118	0/0	a0014	540	1	0	0	0	1	0	copy fasta	MAVS	chr20	3841834	3881118
MAVS_chr20_3841834_3881118	0/0	a0015	540	1	0	0	1	0	0	copy fasta	MAVS	chr20	3841834	3881118
MAVS_chr20_3841834_3881118	0/0	a0016	540	1	1	0	0	0	0	copy fasta	MAVS	chr20	3841834	3881118
MAVS_chr20_3841834_3881118	0/0	a0017	540	1	0	0	1	0	0	copy fasta	MAVS	chr20	3841834	3881118
MAVS_chr20_3841834_3881118	0/0	a0018	306	1	0	0	1	0	0	copy fasta	MAVS	chr20	3841834	3881118
MAVS_chr20_3841834_3881118	0/0	a0019	540	1	0	1	0	0	0	copy fasta	MAVS	chr20	3841834	3881118
MAVS_chr20_3841834_3881118	0/0	a0020	540	1	1	0	0	0	0	copy fasta	MAVS	chr20	3841834	3881118
MAX_chr14_65070127_65107517	1/1	a0001	160	382	86	62	178	12	42	copy fasta	MAX	chr14	65070127	65107517
MAZ_chr16_29801529_29816164	1/1	a0001	477	269	73	53	105	14	22	copy fasta	MAZ	chr16	29801529	29816164
MAZ_chr16_29801529_29816164	0/0	a0002	474	5	0	0	1	0	4	copy fasta	MAZ	chr16	29801529	29816164
MAZ_chr16_29801529_29816164	0/0	a0003	479	3	3	0	0	0	0	copy fasta	MAZ	chr16	29801529	29816164
MAZ_chr16_29801529_29816164	0/0	a0004	472	2	0	0	0	0	2	copy fasta	MAZ	chr16	29801529	29816164
MAZ_chr16_29801529_29816164	0/0	a0005	477	1	0	0	1	0	0	copy fasta	MAZ	chr16	29801529	29816164
MAZ_chr16_29801529_29816164	0/0	a0006	477	1	0	0	1	0	0	copy fasta	MAZ	chr16	29801529	29816164
MAZ_chr16_29801529_29816164	0/0	a0007	477	1	0	1	0	0	0	copy fasta	MAZ	chr16	29801529	29816164
MB21D2_chr3_192791815_192922856	1/1	a0001	491	291	88	52	107	12	30	copy fasta	MB21D2	chr3	192791815	192922856
MB21D2_chr3_192791815_192922856	0/0	a0002	491	1	0	0	0	0	1	copy fasta	MB21D2	chr3	192791815	192922856
MB21D2_chr3_192791815_192922856	0/0	a0003	491	1	1	0	0	0	0	copy fasta	MB21D2	chr3	192791815	192922856
MB21D2_chr3_192791815_192922856	0/0	a0004	491	1	0	0	1	0	0	copy fasta	MB21D2	chr3	192791815	192922856
MB21D2_chr3_192791815_192922856	0/0	a0005	491	1	0	0	1	0	0	copy fasta	MB21D2	chr3	192791815	192922856
MB21D2_chr3_192791815_192922856	0/0	a0006	491	1	1	0	0	0	0	copy fasta	MB21D2	chr3	192791815	192922856
MB21D2_chr3_192791815_192922856	0/0	a0007	491	1	0	0	1	0	0	copy fasta	MB21D2	chr3	192791815	192922856
MB21D2_chr3_192791815_192922856	0/0	a0008	491	1	0	0	0	0	1	copy fasta	MB21D2	chr3	192791815	192922856
MBD1_chr18_50263846_50286523	1/1	a0001	605	323	79	65	132	11	34	copy fasta	MBD1	chr18	50263846	50286523