JoGo: Joint Open Genome and Omics Platform

Search Genic Haplotype Catalog

Haplotypefield

Choose the ACTG layer used to define haplotypes.

Genename

e.g. ALDH2, HBB.

Chr

Chromosome number (1-22, X, Y).

GRCh38

1 = haplotype type matches GRCh38; 0 = does not match.

Chm13v2

1 = haplotype type matches CHM13v2; 0 = does not match.

Gpopname

Filter by superpopulation group.

Popname

Filter by population group.

Total

Minimum number of hits (≥).

Start

Start coordinate (GRCh38).

End

End coordinate (GRCh38).

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regionname	grch38/ chm13v2 1/0: The haplotype type is the same as GRCh38 0/1: The haplotype type is the same as CHM13v2 0/0: The haplotype type matches neither GRCh38 nor CHM13v2 1/1: The haplotype type is the same on both GRCh38 and CHM13v2	ahapid	alen	total	AFR	AMR	EAS	EUR	SAS	aseq	genename	chr	start	end
MC4R_chr18_60366062_60377775	1/1	a0001	332	417	96	77	196	8	38	copy fasta	MC4R	chr18	60366062	60377775
MC4R_chr18_60366062_60377775	0/0	a0002	332	6	0	1	3	0	2	copy fasta	MC4R	chr18	60366062	60377775
MC4R_chr18_60366062_60377775	0/0	a0003	332	2	0	2	0	0	0	copy fasta	MC4R	chr18	60366062	60377775
MC4R_chr18_60366062_60377775	0/0	a0004	332	1	0	0	1	0	0	copy fasta	MC4R	chr18	60366062	60377775
MC4R_chr18_60366062_60377775	0/0	a0005	332	1	1	0	0	0	0	copy fasta	MC4R	chr18	60366062	60377775
MC4R_chr18_60366062_60377775	0/0	a0006	332	1	1	0	0	0	0	copy fasta	MC4R	chr18	60366062	60377775
MC5R_chr18_13819149_13832323	1/1	a0001	325	260	59	46	111	8	34	copy fasta	MC5R	chr18	13819149	13832323
MC5R_chr18_13819149_13832323	0/0	a0002	325	165	39	32	81	6	7	copy fasta	MC5R	chr18	13819149	13832323
MC5R_chr18_13819149_13832323	0/0	a0003	325	3	0	0	3	0	0	copy fasta	MC5R	chr18	13819149	13832323
MC5R_chr18_13819149_13832323	0/0	a0004	325	1	0	0	0	0	1	copy fasta	MC5R	chr18	13819149	13832323
MC5R_chr18_13819149_13832323	0/0	a0005	325	1	0	0	1	0	0	copy fasta	MC5R	chr18	13819149	13832323
MC5R_chr18_13819149_13832323	0/0	a0006	325	1	1	0	0	0	0	copy fasta	MC5R	chr18	13819149	13832323
MC5R_chr18_13819149_13832323	0/0	a0007	325	1	1	0	0	0	0	copy fasta	MC5R	chr18	13819149	13832323
MCAM_chr11_119303529_119322130	1/1	a0001	646	456	87	76	226	18	47	copy fasta	MCAM	chr11	119303529	119322130
MCAM_chr11_119303529_119322130	0/0	a0002	646	6	5	1	0	0	0	copy fasta	MCAM	chr11	119303529	119322130
MCAM_chr11_119303529_119322130	0/0	a0003	646	4	0	3	0	0	1	copy fasta	MCAM	chr11	119303529	119322130
MCAM_chr11_119303529_119322130	0/0	a0004	645	2	2	0	0	0	0	copy fasta	MCAM	chr11	119303529	119322130
MCAM_chr11_119303529_119322130	0/0	a0005	646	2	0	0	2	0	0	copy fasta	MCAM	chr11	119303529	119322130
MCAM_chr11_119303529_119322130	0/0	a0006	646	2	0	0	2	0	0	copy fasta	MCAM	chr11	119303529	119322130
MCAM_chr11_119303529_119322130	0/0	a0007	646	2	0	0	0	0	2	copy fasta	MCAM	chr11	119303529	119322130
MCAM_chr11_119303529_119322130	0/0	a0008	646	2	2	0	0	0	0	copy fasta	MCAM	chr11	119303529	119322130
MCAM_chr11_119303529_119322130	0/0	a0009	646	2	0	2	0	0	0	copy fasta	MCAM	chr11	119303529	119322130
MCAM_chr11_119303529_119322130	0/0	a0010	646	1	0	0	1	0	0	copy fasta	MCAM	chr11	119303529	119322130
MCAM_chr11_119303529_119322130	0/0	a0011	645	1	1	0	0	0	0	copy fasta	MCAM	chr11	119303529	119322130
MCAM_chr11_119303529_119322130	0/0	a0012	646	1	1	0	0	0	0	copy fasta	MCAM	chr11	119303529	119322130
MCAM_chr11_119303529_119322130	0/0	a0013	646	1	0	0	1	0	0	copy fasta	MCAM	chr11	119303529	119322130
MCAT_chr22_43127209_43148398	1/0	a0001	390	212	59	45	79	4	24	copy fasta	MCAT	chr22	43127209	43148398
MCAT_chr22_43127209_43148398	0/1	a0002	390	183	19	38	96	12	17	copy fasta	MCAT	chr22	43127209	43148398
MCAT_chr22_43127209_43148398	0/0	a0003	390	9	9	0	0	0	0	copy fasta	MCAT	chr22	43127209	43148398
MCAT_chr22_43127209_43148398	0/0	a0004	390	4	3	1	0	0	0	copy fasta	MCAT	chr22	43127209	43148398
MCAT_chr22_43127209_43148398	0/0	a0005	390	2	0	0	0	2	0	copy fasta	MCAT	chr22	43127209	43148398
MCAT_chr22_43127209_43148398	0/0	a0006	390	2	2	0	0	0	0	copy fasta	MCAT	chr22	43127209	43148398
MCAT_chr22_43127209_43148398	0/0	a0007	390	2	0	0	0	0	2	copy fasta	MCAT	chr22	43127209	43148398
MCAT_chr22_43127209_43148398	0/0	a0008	390	1	0	0	0	0	1	copy fasta	MCAT	chr22	43127209	43148398
MCAT_chr22_43127209_43148398	0/0	a0009	390	1	1	0	0	0	0	copy fasta	MCAT	chr22	43127209	43148398
MCAT_chr22_43127209_43148398	0/0	a0010	390	1	0	0	1	0	0	copy fasta	MCAT	chr22	43127209	43148398
MCAT_chr22_43127209_43148398	0/0	a0011	390	1	1	0	0	0	0	copy fasta	MCAT	chr22	43127209	43148398
MCCC1_chr3_183010218_183104496	1/0	a0001	725	198	70	24	84	2	17	copy fasta	MCCC1	chr3	183010218	183104496
MCCC1_chr3_183010218_183104496	0/1	a0002	725	138	16	38	60	6	17	copy fasta	MCCC1	chr3	183010218	183104496
MCCC1_chr3_183010218_183104496	0/0	a0003	725	4	4	0	0	0	0	copy fasta	MCCC1	chr3	183010218	183104496
MCCC1_chr3_183010218_183104496	0/0	a0004	725	2	0	0	2	0	0	copy fasta	MCCC1	chr3	183010218	183104496
MCCC1_chr3_183010218_183104496	0/0	a0005	725	2	2	0	0	0	0	copy fasta	MCCC1	chr3	183010218	183104496
MCCC2_chr5_71582340_71663706	1/1	a0001	563	346	81	59	156	8	40	copy fasta	MCCC2	chr5	71582340	71663706
MCCC2_chr5_71582340_71663706	0/0	a0002	563	1	0	0	1	0	0	copy fasta	MCCC2	chr5	71582340	71663706
MCCC2_chr5_71582340_71663706	0/0	a0003	563	1	1	0	0	0	0	copy fasta	MCCC2	chr5	71582340	71663706
MCCC2_chr5_71582340_71663706	0/0	a0004	563	1	0	0	1	0	0	copy fasta	MCCC2	chr5	71582340	71663706
MCCC2_chr5_71582340_71663706	0/0	a0005	563	1	0	1	0	0	0	copy fasta	MCCC2	chr5	71582340	71663706
MCCD1_chr6_31523962_31535232	0/0	a0001	119	327	69	63	151	14	30	copy fasta	MCCD1	chr6	31523962	31535232
MCCD1_chr6_31523962_31535232	0/1	a0002	119	57	5	10	29	1	11	copy fasta	MCCD1	chr6	31523962	31535232
MCCD1_chr6_31523962_31535232	0/0	a0003	119	49	10	10	25	1	3	copy fasta	MCCD1	chr6	31523962	31535232