JoGo: Joint Open Genome and Omics Platform

Search Genic Haplotype Catalog

Haplotypefield

Choose the ACTG layer used to define haplotypes.

Genename

e.g. ALDH2, HBB.

Chr

Chromosome number (1-22, X, Y).

GRCh38

1 = haplotype type matches GRCh38; 0 = does not match.

Chm13v2

1 = haplotype type matches CHM13v2; 0 = does not match.

Gpopname

Filter by superpopulation group.

Popname

Filter by population group.

Total

Minimum number of hits (≥).

Start

Start coordinate (GRCh38).

End

End coordinate (GRCh38).

Sort By

Choose a field to sort by.

Order by

Ascending / Descending.

Show

Results per page.

regionname	grch38/ chm13v2 1/0: The haplotype type is the same as GRCh38 0/1: The haplotype type is the same as CHM13v2 0/0: The haplotype type matches neither GRCh38 nor CHM13v2 1/1: The haplotype type is the same on both GRCh38 and CHM13v2	ahapid	alen	total	AFR	AMR	EAS	EUR	SAS	aseq	genename	chr	start	end
MED25_chr19_49813289_49841979	0/0	a0005	747	1	0	0	1	0	0	copy fasta	MED25	chr19	49813289	49841979
MED25_chr19_49813289_49841979	0/0	a0006	747	1	0	0	1	0	0	copy fasta	MED25	chr19	49813289	49841979
MED25_chr19_49813289_49841979	0/0	a0007	747	1	1	0	0	0	0	copy fasta	MED25	chr19	49813289	49841979
MED26_chr19_16569919_16633204	1/1	a0001	600	265	77	62	78	6	40	copy fasta	MED26	chr19	16569919	16633204
MED26_chr19_16569919_16633204	0/0	a0002	600	1	1	0	0	0	0	copy fasta	MED26	chr19	16569919	16633204
MED26_chr19_16569919_16633204	0/0	a0003	600	1	1	0	0	0	0	copy fasta	MED26	chr19	16569919	16633204
MED26_chr19_16569919_16633204	0/0	a0004	600	1	1	0	0	0	0	copy fasta	MED26	chr19	16569919	16633204
MED27_chr9_131855112_132084867	1/1	a0001	311	273	94	52	101	4	20	copy fasta	MED27	chr9	131855112	132084867
MED27_chr9_131855112_132084867	0/0	a0002	311	1	0	0	1	0	0	copy fasta	MED27	chr9	131855112	132084867
MED28_chr4_17609641_17639105	1/1	a0001	178	328	98	70	106	14	38	copy fasta	MED28	chr4	17609641	17639105
MED29_chr19_39386378_39405641	1/1	a0001	200	388	94	76	162	16	38	copy fasta	MED29	chr19	39386378	39405641
MED30_chr8_117515713_117545262	1/1	a0001	178	342	80	72	146	14	28	copy fasta	MED30	chr8	117515713	117545262
MED30_chr8_117515713_117545262	0/0	a0002	178	3	3	0	0	0	0	copy fasta	MED30	chr8	117515713	117545262
MED30_chr8_117515713_117545262	0/0	a0003	178	2	2	0	0	0	0	copy fasta	MED30	chr8	117515713	117545262
MED30_chr8_117515713_117545262	0/0	a0004	178	1	1	0	0	0	0	copy fasta	MED30	chr8	117515713	117545262
MED31_chr17_6638311_6656605	1/1	a0001	131	428	96	72	196	16	46	copy fasta	MED31	chr17	6638311	6656605
MED4_chr13_48070724_48100104	1/1	a0001	270	406	86	69	188	17	44	copy fasta	MED4	chr13	48070724	48100104
MED4_chr13_48070724_48100104	0/0	a0002	270	1	0	1	0	0	0	copy fasta	MED4	chr13	48070724	48100104
MED4_chr13_48070724_48100104	0/0	a0003	270	1	0	0	0	1	0	copy fasta	MED4	chr13	48070724	48100104
MED6_chr14_70578221_70605655	1/1	a0001	246	403	86	64	193	12	46	copy fasta	MED6	chr14	70578221	70605655
MED6_chr14_70578221_70605655	0/0	a0002	246	1	0	0	1	0	0	copy fasta	MED6	chr14	70578221	70605655
MED6_chr14_70578221_70605655	0/0	a0003	246	1	0	0	1	0	0	copy fasta	MED6	chr14	70578221	70605655
MED6_chr14_70578221_70605655	0/0	a0004	246	1	0	0	1	0	0	copy fasta	MED6	chr14	70578221	70605655
MED7_chr5_157132424_157147865	1/1	a0001	233	373	87	66	164	12	42	copy fasta	MED7	chr5	157132424	157147865
MED7_chr5_157132424_157147865	0/0	a0002	233	7	7	0	0	0	0	copy fasta	MED7	chr5	157132424	157147865
MED7_chr5_157132424_157147865	0/0	a0003	233	4	1	3	0	0	0	copy fasta	MED7	chr5	157132424	157147865
MED7_chr5_157132424_157147865	0/0	a0004	233	1	0	1	0	0	0	copy fasta	MED7	chr5	157132424	157147865
MED7_chr5_157132424_157147865	0/0	a0005	233	1	1	0	0	0	0	copy fasta	MED7	chr5	157132424	157147865
MED8_chr1_43378917_43394800	1/1	a0001	268	380	96	70	160	15	37	copy fasta	MED8	chr1	43378917	43394800
MED8_chr1_43378917_43394800	0/0	a0002	158	1	0	0	0	1	0	copy fasta	MED8	chr1	43378917	43394800
MED8_chr1_43378917_43394800	0/0	a0003	268	1	0	0	0	0	1	copy fasta	MED8	chr1	43378917	43394800
MED9_chr17_17472000_17498221	0/0	a0000	0	1	0	0	1	0	0	copy fasta	MED9	chr17	17472000	17498221
MED9_chr17_17472000_17498221	1/1	a0001	146	393	87	74	177	16	37	copy fasta	MED9	chr17	17472000	17498221
MED9_chr17_17472000_17498221	0/0	a0002	146	9	9	0	0	0	0	copy fasta	MED9	chr17	17472000	17498221
MED9_chr17_17472000_17498221	0/0	a0003	146	1	0	0	0	0	1	copy fasta	MED9	chr17	17472000	17498221
MEDAG_chr13_30901271_30930572	0/1	a0001	303	425	86	75	200	14	49	copy fasta	MEDAG	chr13	30901271	30930572
MEDAG_chr13_30901271_30930572	0/0	a0002	303	11	3	3	0	4	1	copy fasta	MEDAG	chr13	30901271	30930572
MEDAG_chr13_30901271_30930572	1/0	a0003	303	10	8	1	0	0	0	copy fasta	MEDAG	chr13	30901271	30930572
MEDAG_chr13_30901271_30930572	0/0	a0004	303	4	3	1	0	0	0	copy fasta	MEDAG	chr13	30901271	30930572
MEDAG_chr13_30901271_30930572	0/0	a0005	303	1	0	0	1	0	0	copy fasta	MEDAG	chr13	30901271	30930572
MEDAG_chr13_30901271_30930572	0/0	a0006	303	1	0	0	1	0	0	copy fasta	MEDAG	chr13	30901271	30930572
MEF2A_chr15_99560984_99721488	1/1	a0001	505	182	61	32	64	9	14	copy fasta	MEF2A	chr15	99560984	99721488
MEF2A_chr15_99560984_99721488	0/0	a0002	503	78	1	13	45	4	15	copy fasta	MEF2A	chr15	99560984	99721488
MEF2A_chr15_99560984_99721488	0/0	a0003	504	71	14	18	34	2	3	copy fasta	MEF2A	chr15	99560984	99721488
MEF2A_chr15_99560984_99721488	0/0	a0004	507	11	8	3	0	0	0	copy fasta	MEF2A	chr15	99560984	99721488
MEF2A_chr15_99560984_99721488	0/0	a0005	502	8	0	1	7	0	0	copy fasta	MEF2A	chr15	99560984	99721488
MEF2A_chr15_99560984_99721488	0/0	a0006	502	4	2	0	2	0	0	copy fasta	MEF2A	chr15	99560984	99721488
MEF2A_chr15_99560984_99721488	0/0	a0007	508	4	0	0	3	0	1	copy fasta	MEF2A	chr15	99560984	99721488
MEF2A_chr15_99560984_99721488	0/0	a0008	498	3	0	0	3	0	0	copy fasta	MEF2A	chr15	99560984	99721488
MEF2A_chr15_99560984_99721488	0/0	a0009	501	3	1	0	2	0	0	copy fasta	MEF2A	chr15	99560984	99721488