JoGo: Joint Open Genome and Omics Platform

Search Genic Haplotype Catalog

Haplotypefield

Choose the ACTG layer used to define haplotypes.

Genename

e.g. ALDH2, HBB.

Chr

Chromosome number (1-22, X, Y).

GRCh38

1 = haplotype type matches GRCh38; 0 = does not match.

Chm13v2

1 = haplotype type matches CHM13v2; 0 = does not match.

Gpopname

Filter by superpopulation group.

Popname

Filter by population group.

Total

Minimum number of hits (≥).

Start

Start coordinate (GRCh38).

End

End coordinate (GRCh38).

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regionname	grch38/ chm13v2 1/0: The haplotype type is the same as GRCh38 0/1: The haplotype type is the same as CHM13v2 0/0: The haplotype type matches neither GRCh38 nor CHM13v2 1/1: The haplotype type is the same on both GRCh38 and CHM13v2	ahapid	alen	total	AFR	AMR	EAS	EUR	SAS	aseq	genename	chr	start	end
MEI1_chr22_41694503_41804454	0/0	a0008	1274	1	0	1	0	0	0	copy fasta	MEI1	chr22	41694503	41804454
MEI1_chr22_41694503_41804454	0/0	a0009	1274	1	1	0	0	0	0	copy fasta	MEI1	chr22	41694503	41804454
MEI1_chr22_41694503_41804454	0/0	a0010	1274	1	1	0	0	0	0	copy fasta	MEI1	chr22	41694503	41804454
MEI1_chr22_41694503_41804454	0/0	a0011	1274	1	1	0	0	0	0	copy fasta	MEI1	chr22	41694503	41804454
MEI1_chr22_41694503_41804454	0/0	a0012	1274	1	1	0	0	0	0	copy fasta	MEI1	chr22	41694503	41804454
MEI4_chr6_77648039_77932045	1/1	a0001	385	307	68	66	137	12	22	copy fasta	MEI4	chr6	77648039	77932045
MEI4_chr6_77648039_77932045	0/0	a0002	385	34	9	3	20	0	2	copy fasta	MEI4	chr6	77648039	77932045
MEI4_chr6_77648039_77932045	0/0	a0003	385	7	0	0	7	0	0	copy fasta	MEI4	chr6	77648039	77932045
MEI4_chr6_77648039_77932045	0/0	a0004	385	7	6	1	0	0	0	copy fasta	MEI4	chr6	77648039	77932045
MEI4_chr6_77648039_77932045	0/0	a0005	385	3	3	0	0	0	0	copy fasta	MEI4	chr6	77648039	77932045
MEI4_chr6_77648039_77932045	0/0	a0006	385	1	0	0	1	0	0	copy fasta	MEI4	chr6	77648039	77932045
MEI4_chr6_77648039_77932045	0/0	a0007	385	1	0	0	1	0	0	copy fasta	MEI4	chr6	77648039	77932045
MEIG1_chr10_14954388_14977857	0/1	a0001	88	239	53	56	85	13	31	copy fasta	MEIG1	chr10	14954388	14977857
MEIG1_chr10_14954388_14977857	1/0	a0002	88	203	41	24	115	5	17	copy fasta	MEIG1	chr10	14954388	14977857
MEIKIN_chr5_131801990_131950663	1/1	a0001	373	345	90	64	155	8	26	copy fasta	MEIKIN	chr5	131801990	131950663
MEIKIN_chr5_131801990_131950663	0/0	a0002	373	1	0	0	1	0	0	copy fasta	MEIKIN	chr5	131801990	131950663
MEIOB_chr16_1828986_1877164	0/0	a0001	471	200	54	34	85	5	22	copy fasta	MEIOB	chr16	1828986	1877164
MEIOB_chr16_1828986_1877164	0/1	a0002	471	87	11	8	54	2	11	copy fasta	MEIOB	chr16	1828986	1877164
MEIOB_chr16_1828986_1877164	0/0	a0003	471	70	17	17	30	1	5	copy fasta	MEIOB	chr16	1828986	1877164
MEIOB_chr16_1828986_1877164	0/0	a0004	471	8	0	0	8	0	0	copy fasta	MEIOB	chr16	1828986	1877164
MEIOB_chr16_1828986_1877164	0/0	a0005	471	6	0	0	2	0	4	copy fasta	MEIOB	chr16	1828986	1877164
MEIOB_chr16_1828986_1877164	0/0	a0006	471	2	0	2	0	0	0	copy fasta	MEIOB	chr16	1828986	1877164
MEIOB_chr16_1828986_1877164	0/0	a0007	471	2	2	0	0	0	0	copy fasta	MEIOB	chr16	1828986	1877164
MEIOB_chr16_1828986_1877164	0/0	a0008	471	1	1	0	0	0	0	copy fasta	MEIOB	chr16	1828986	1877164
MEIOB_chr16_1828986_1877164	0/0	a0009	471	1	0	0	1	0	0	copy fasta	MEIOB	chr16	1828986	1877164
MEIOB_chr16_1828986_1877164	0/0	a0010	471	1	1	0	0	0	0	copy fasta	MEIOB	chr16	1828986	1877164
MEIOB_chr16_1828986_1877164	0/0	a0011	471	1	0	1	0	0	0	copy fasta	MEIOB	chr16	1828986	1877164
MEIOB_chr16_1828986_1877164	1/0	a0012	471	1	0	0	0	0	0	copy fasta	MEIOB	chr16	1828986	1877164
MEIOC_chr17_44651468_44680801	1/1	a0001	952	272	48	55	128	11	28	copy fasta	MEIOC	chr17	44651468	44680801
MEIOC_chr17_44651468_44680801	0/0	a0002	952	56	30	10	12	1	3	copy fasta	MEIOC	chr17	44651468	44680801
MEIOC_chr17_44651468_44680801	0/0	a0003	952	10	9	1	0	0	0	copy fasta	MEIOC	chr17	44651468	44680801
MEIOC_chr17_44651468_44680801	0/0	a0004	952	4	1	1	0	1	1	copy fasta	MEIOC	chr17	44651468	44680801
MEIOC_chr17_44651468_44680801	0/0	a0005	952	2	0	0	0	1	1	copy fasta	MEIOC	chr17	44651468	44680801
MEIOC_chr17_44651468_44680801	0/0	a0006	952	1	1	0	0	0	0	copy fasta	MEIOC	chr17	44651468	44680801
MEIOC_chr17_44651468_44680801	0/0	a0007	952	1	0	0	1	0	0	copy fasta	MEIOC	chr17	44651468	44680801
MEIOC_chr17_44651468_44680801	0/0	a0008	657	1	0	0	0	0	1	copy fasta	MEIOC	chr17	44651468	44680801
MEIOC_chr17_44651468_44680801	0/0	a0009	952	1	0	1	0	0	0	copy fasta	MEIOC	chr17	44651468	44680801
MEIOC_chr17_44651468_44680801	0/0	a0010	952	1	1	0	0	0	0	copy fasta	MEIOC	chr17	44651468	44680801
MEIOC_chr17_44651468_44680801	0/0	a0011	952	1	0	0	1	0	0	copy fasta	MEIOC	chr17	44651468	44680801
MEIOC_chr17_44651468_44680801	0/0	a0012	952	1	0	0	1	0	0	copy fasta	MEIOC	chr17	44651468	44680801
MEIOC_chr17_44651468_44680801	0/0	a0013	952	1	0	0	1	0	0	copy fasta	MEIOC	chr17	44651468	44680801
MEIOSIN_chr19_45728439_45769541	0/0	a0000	0	12	1	4	7	0	0	copy fasta	MEIOSIN	chr19	45728439	45769541
MEIOSIN_chr19_45728439_45769541	0/0	a0001	640	184	33	43	80	9	19	copy fasta	MEIOSIN	chr19	45728439	45769541
MEIOSIN_chr19_45728439_45769541	0/1	a0002	638	78	18	18	30	5	6	copy fasta	MEIOSIN	chr19	45728439	45769541
MEIOSIN_chr19_45728439_45769541	1/0	a0003	638	48	16	6	19	3	3	copy fasta	MEIOSIN	chr19	45728439	45769541
MEIOSIN_chr19_45728439_45769541	0/0	a0004	638	12	12	0	0	0	0	copy fasta	MEIOSIN	chr19	45728439	45769541
MEIOSIN_chr19_45728439_45769541	0/0	a0005	640	7	5	1	0	1	0	copy fasta	MEIOSIN	chr19	45728439	45769541
MEIOSIN_chr19_45728439_45769541	0/0	a0006	640	3	0	2	0	0	1	copy fasta	MEIOSIN	chr19	45728439	45769541
MEIOSIN_chr19_45728439_45769541	0/0	a0007	636	3	0	0	2	0	1	copy fasta	MEIOSIN	chr19	45728439	45769541
MEIOSIN_chr19_45728439_45769541	0/0	a0008	640	2	0	0	0	0	2	copy fasta	MEIOSIN	chr19	45728439	45769541