JoGo: Joint Open Genome and Omics Platform

Search Genic Haplotype Catalog

Haplotypefield

Choose the ACTG layer used to define haplotypes.

Genename

e.g. ALDH2, HBB.

Chr

Chromosome number (1-22, X, Y).

GRCh38

1 = haplotype type matches GRCh38; 0 = does not match.

Chm13v2

1 = haplotype type matches CHM13v2; 0 = does not match.

Gpopname

Filter by superpopulation group.

Popname

Filter by population group.

Total

Minimum number of hits (≥).

Start

Start coordinate (GRCh38).

End

End coordinate (GRCh38).

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regionname	grch38/ chm13v2 1/0: The haplotype type is the same as GRCh38 0/1: The haplotype type is the same as CHM13v2 0/0: The haplotype type matches neither GRCh38 nor CHM13v2 1/1: The haplotype type is the same on both GRCh38 and CHM13v2	ahapid	alen	total	AFR	AMR	EAS	EUR	SAS	aseq	genename	chr	start	end
MGAM_chr7_141990879_142111747	0/0	a0060	2753	1	0	0	0	0	1	copy fasta	MGAM	chr7	141990879	142111747
MGAM_chr7_141990879_142111747	0/0	a0061	2753	1	1	0	0	0	0	copy fasta	MGAM	chr7	141990879	142111747
MGAM_chr7_141990879_142111747	0/0	a0062	2753	1	1	0	0	0	0	copy fasta	MGAM	chr7	141990879	142111747
MGAM_chr7_141990879_142111747	0/0	a0063	2753	1	1	0	0	0	0	copy fasta	MGAM	chr7	141990879	142111747
MGAM_chr7_141990879_142111747	0/0	a0064	2753	1	1	0	0	0	0	copy fasta	MGAM	chr7	141990879	142111747
MGAM_chr7_141990879_142111747	0/0	a0065	2753	1	1	0	0	0	0	copy fasta	MGAM	chr7	141990879	142111747
MGAM_chr7_141990879_142111747	0/0	a0066	2753	1	1	0	0	0	0	copy fasta	MGAM	chr7	141990879	142111747
MGAM_chr7_141990879_142111747	0/0	a0067	2753	1	1	0	0	0	0	copy fasta	MGAM	chr7	141990879	142111747
MGAM_chr7_141990879_142111747	0/0	a0068	2753	1	0	1	0	0	0	copy fasta	MGAM	chr7	141990879	142111747
MGAM_chr7_141990879_142111747	0/0	a0069	2753	1	0	0	1	0	0	copy fasta	MGAM	chr7	141990879	142111747
MGAM_chr7_141990879_142111747	0/0	a0070	2745	1	0	0	1	0	0	copy fasta	MGAM	chr7	141990879	142111747
MGARP_chr4_139261165_139285225	1/1	a0001	240	322	76	57	135	16	36	copy fasta	MGARP	chr4	139261165	139285225
MGARP_chr4_139261165_139285225	0/0	a0002	240	25	4	7	14	0	0	copy fasta	MGARP	chr4	139261165	139285225
MGARP_chr4_139261165_139285225	0/0	a0003	240	9	9	0	0	0	0	copy fasta	MGARP	chr4	139261165	139285225
MGARP_chr4_139261165_139285225	0/0	a0004	240	3	3	0	0	0	0	copy fasta	MGARP	chr4	139261165	139285225
MGARP_chr4_139261165_139285225	0/0	a0005	240	2	2	0	0	0	0	copy fasta	MGARP	chr4	139261165	139285225
MGARP_chr4_139261165_139285225	0/0	a0006	240	2	2	0	0	0	0	copy fasta	MGARP	chr4	139261165	139285225
MGARP_chr4_139261165_139285225	0/0	a0007	240	1	0	0	1	0	0	copy fasta	MGARP	chr4	139261165	139285225
MGAT1_chr5_180779780_180807806	0/1	a0001	445	248	73	41	86	11	36	copy fasta	MGAT1	chr5	180779780	180807806
MGAT1_chr5_180779780_180807806	1/0	a0002	445	115	8	28	66	6	6	copy fasta	MGAT1	chr5	180779780	180807806
MGAT1_chr5_180779780_180807806	0/0	a0003	445	63	11	5	41	1	5	copy fasta	MGAT1	chr5	180779780	180807806
MGAT1_chr5_180779780_180807806	0/0	a0004	445	3	1	0	2	0	0	copy fasta	MGAT1	chr5	180779780	180807806
MGAT1_chr5_180779780_180807806	0/0	a0005	445	2	0	0	0	0	2	copy fasta	MGAT1	chr5	180779780	180807806
MGAT1_chr5_180779780_180807806	0/0	a0006	445	2	2	0	0	0	0	copy fasta	MGAT1	chr5	180779780	180807806
MGAT1_chr5_180779780_180807806	0/0	a0007	445	1	0	0	0	0	1	copy fasta	MGAT1	chr5	180779780	180807806
MGAT1_chr5_180779780_180807806	0/0	a0008	445	1	1	0	0	0	0	copy fasta	MGAT1	chr5	180779780	180807806
MGAT1_chr5_180779780_180807806	0/0	a0009	445	1	0	0	1	0	0	copy fasta	MGAT1	chr5	180779780	180807806
MGAT2_chr14_49615799_49628481	1/1	a0001	447	352	95	67	132	18	38	copy fasta	MGAT2	chr14	49615799	49628481
MGAT2_chr14_49615799_49628481	0/0	a0002	447	2	0	0	0	0	2	copy fasta	MGAT2	chr14	49615799	49628481
MGAT2_chr14_49615799_49628481	0/0	a0003	447	1	0	1	0	0	0	copy fasta	MGAT2	chr14	49615799	49628481
MGAT2_chr14_49615799_49628481	0/0	a0004	447	1	1	0	0	0	0	copy fasta	MGAT2	chr14	49615799	49628481
MGAT3_chr22_39452012_39497194	1/1	a0001	533	303	95	74	70	18	44	copy fasta	MGAT3	chr22	39452012	39497194
MGAT3_chr22_39452012_39497194	0/0	a0002	533	2	0	0	2	0	0	copy fasta	MGAT3	chr22	39452012	39497194
MGAT3_chr22_39452012_39497194	0/0	a0003	533	1	1	0	0	0	0	copy fasta	MGAT3	chr22	39452012	39497194
MGAT4A_chr2_98614106_98736132	1/1	a0001	535	256	61	59	92	8	34	copy fasta	MGAT4A	chr2	98614106	98736132
MGAT4A_chr2_98614106_98736132	0/0	a0002	535	4	0	0	4	0	0	copy fasta	MGAT4A	chr2	98614106	98736132
MGAT4A_chr2_98614106_98736132	0/0	a0003	535	1	0	1	0	0	0	copy fasta	MGAT4A	chr2	98614106	98736132
MGAT4A_chr2_98614106_98736132	0/0	a0004	535	1	1	0	0	0	0	copy fasta	MGAT4A	chr2	98614106	98736132
MGAT4B_chr5_179792610_179811866	1/1	a0001	548	395	92	74	171	14	42	copy fasta	MGAT4B	chr5	179792610	179811866
MGAT4B_chr5_179792610_179811866	0/0	a0002	548	6	0	0	6	0	0	copy fasta	MGAT4B	chr5	179792610	179811866
MGAT4B_chr5_179792610_179811866	0/0	a0003	548	2	0	0	2	0	0	copy fasta	MGAT4B	chr5	179792610	179811866
MGAT4B_chr5_179792610_179811866	0/0	a0004	548	2	1	1	0	0	0	copy fasta	MGAT4B	chr5	179792610	179811866
MGAT4B_chr5_179792610_179811866	0/0	a0005	548	2	0	0	0	0	2	copy fasta	MGAT4B	chr5	179792610	179811866
MGAT4B_chr5_179792610_179811866	0/0	a0006	548	1	0	0	1	0	0	copy fasta	MGAT4B	chr5	179792610	179811866
MGAT4B_chr5_179792610_179811866	0/0	a0007	548	1	0	0	1	0	0	copy fasta	MGAT4B	chr5	179792610	179811866
MGAT4B_chr5_179792610_179811866	0/0	a0008	548	1	1	0	0	0	0	copy fasta	MGAT4B	chr5	179792610	179811866
MGAT4B_chr5_179792610_179811866	0/0	a0009	548	1	0	0	1	0	0	copy fasta	MGAT4B	chr5	179792610	179811866
MGAT4B_chr5_179792610_179811866	0/0	a0010	548	1	0	1	0	0	0	copy fasta	MGAT4B	chr5	179792610	179811866
MGAT4C_chr12_85950667_86261391	0/0	a0001	478	182	68	34	50	12	18	copy fasta	MGAT4C	chr12	85950667	86261391
MGAT4C_chr12_85950667_86261391	0/0	a0002	478	4	0	2	0	2	0	copy fasta	MGAT4C	chr12	85950667	86261391