JoGo: Joint Open Genome and Omics Platform

Search Genic Haplotype Catalog

Haplotypefield

Choose the ACTG layer used to define haplotypes.

Genename

e.g. ALDH2, HBB.

Chr

Chromosome number (1-22, X, Y).

GRCh38

1 = haplotype type matches GRCh38; 0 = does not match.

Chm13v2

1 = haplotype type matches CHM13v2; 0 = does not match.

Gpopname

Filter by superpopulation group.

Popname

Filter by population group.

Total

Minimum number of hits (≥).

Start

Start coordinate (GRCh38).

End

End coordinate (GRCh38).

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regionname	grch38/ chm13v2 1/0: The haplotype type is the same as GRCh38 0/1: The haplotype type is the same as CHM13v2 0/0: The haplotype type matches neither GRCh38 nor CHM13v2 1/1: The haplotype type is the same on both GRCh38 and CHM13v2	ahapid	alen	total	AFR	AMR	EAS	EUR	SAS	aseq	genename	chr	start	end
MMRN1_chr4_89889854_89959614	0/0	a0002	1228	45	0	1	41	0	3	copy fasta	MMRN1	chr4	89889854	89959614
MMRN1_chr4_89889854_89959614	0/0	a0003	1228	13	11	1	0	0	1	copy fasta	MMRN1	chr4	89889854	89959614
MMRN1_chr4_89889854_89959614	0/0	a0004	1228	5	2	3	0	0	0	copy fasta	MMRN1	chr4	89889854	89959614
MMRN1_chr4_89889854_89959614	0/0	a0005	1228	3	3	0	0	0	0	copy fasta	MMRN1	chr4	89889854	89959614
MMRN1_chr4_89889854_89959614	0/0	a0006	1228	3	3	0	0	0	0	copy fasta	MMRN1	chr4	89889854	89959614
MMRN1_chr4_89889854_89959614	0/1	a0007	1228	2	0	0	0	0	1	copy fasta	MMRN1	chr4	89889854	89959614
MMRN1_chr4_89889854_89959614	0/0	a0008	1228	1	1	0	0	0	0	copy fasta	MMRN1	chr4	89889854	89959614
MMRN1_chr4_89889854_89959614	0/0	a0009	1228	1	0	1	0	0	0	copy fasta	MMRN1	chr4	89889854	89959614
MMRN1_chr4_89889854_89959614	0/0	a0010	1228	1	0	1	0	0	0	copy fasta	MMRN1	chr4	89889854	89959614
MMRN1_chr4_89889854_89959614	0/0	a0011	1228	1	0	0	1	0	0	copy fasta	MMRN1	chr4	89889854	89959614
MMRN1_chr4_89889854_89959614	0/0	a0012	1228	1	0	0	1	0	0	copy fasta	MMRN1	chr4	89889854	89959614
MMRN1_chr4_89889854_89959614	0/0	a0013	1228	1	0	0	1	0	0	copy fasta	MMRN1	chr4	89889854	89959614
MMRN1_chr4_89889854_89959614	0/0	a0014	1228	1	0	0	1	0	0	copy fasta	MMRN1	chr4	89889854	89959614
MMRN1_chr4_89889854_89959614	0/0	a0015	1228	1	0	0	1	0	0	copy fasta	MMRN1	chr4	89889854	89959614
MMRN1_chr4_89889854_89959614	0/0	a0016	1228	1	0	0	1	0	0	copy fasta	MMRN1	chr4	89889854	89959614
MMRN1_chr4_89889854_89959614	0/0	a0017	1228	1	1	0	0	0	0	copy fasta	MMRN1	chr4	89889854	89959614
MMRN1_chr4_89889854_89959614	0/0	a0018	1228	1	0	0	1	0	0	copy fasta	MMRN1	chr4	89889854	89959614
MMRN2_chr10_86930540_86962615	0/0	a0001	949	162	47	39	47	12	17	copy fasta	MMRN2	chr10	86930540	86962615
MMRN2_chr10_86930540_86962615	0/0	a0002	949	140	15	24	76	6	19	copy fasta	MMRN2	chr10	86930540	86962615
MMRN2_chr10_86930540_86962615	0/1	a0003	949	29	8	6	10	0	4	copy fasta	MMRN2	chr10	86930540	86962615
MMRN2_chr10_86930540_86962615	0/0	a0004	949	14	0	3	11	0	0	copy fasta	MMRN2	chr10	86930540	86962615
MMRN2_chr10_86930540_86962615	1/0	a0005	949	9	7	1	0	0	0	copy fasta	MMRN2	chr10	86930540	86962615
MMRN2_chr10_86930540_86962615	0/0	a0006	949	8	8	0	0	0	0	copy fasta	MMRN2	chr10	86930540	86962615
MMRN2_chr10_86930540_86962615	0/0	a0007	949	7	6	1	0	0	0	copy fasta	MMRN2	chr10	86930540	86962615
MMRN2_chr10_86930540_86962615	0/0	a0008	949	3	0	0	3	0	0	copy fasta	MMRN2	chr10	86930540	86962615
MMRN2_chr10_86930540_86962615	0/0	a0009	949	2	2	0	0	0	0	copy fasta	MMRN2	chr10	86930540	86962615
MMRN2_chr10_86930540_86962615	0/0	a0010	949	1	0	0	0	0	1	copy fasta	MMRN2	chr10	86930540	86962615
MMRN2_chr10_86930540_86962615	0/0	a0011	949	1	0	0	0	0	1	copy fasta	MMRN2	chr10	86930540	86962615
MMRN2_chr10_86930540_86962615	0/0	a0012	949	1	1	0	0	0	0	copy fasta	MMRN2	chr10	86930540	86962615
MMRN2_chr10_86930540_86962615	0/0	a0013	949	1	1	0	0	0	0	copy fasta	MMRN2	chr10	86930540	86962615
MMRN2_chr10_86930540_86962615	0/0	a0014	949	1	0	0	0	0	1	copy fasta	MMRN2	chr10	86930540	86962615
MMRN2_chr10_86930540_86962615	0/0	a0015	949	1	0	0	0	0	1	copy fasta	MMRN2	chr10	86930540	86962615
MMRN2_chr10_86930540_86962615	0/0	a0016	949	1	1	0	0	0	0	copy fasta	MMRN2	chr10	86930540	86962615
MMRN2_chr10_86930540_86962615	0/0	a0017	949	1	0	0	1	0	0	copy fasta	MMRN2	chr10	86930540	86962615
MMS19_chr10_97453324_97503422	0/1	a0001	1030	199	58	36	79	3	22	copy fasta	MMS19	chr10	97453324	97503422
MMS19_chr10_97453324_97503422	0/0	a0002	1030	109	9	25	65	3	7	copy fasta	MMS19	chr10	97453324	97503422
MMS19_chr10_97453324_97503422	1/0	a0003	1030	25	8	0	8	3	5	copy fasta	MMS19	chr10	97453324	97503422
MMS19_chr10_97453324_97503422	0/0	a0004	1030	18	9	1	5	2	1	copy fasta	MMS19	chr10	97453324	97503422
MMS19_chr10_97453324_97503422	0/0	a0005	1030	11	0	7	4	0	0	copy fasta	MMS19	chr10	97453324	97503422
MMS19_chr10_97453324_97503422	0/0	a0006	1030	5	0	5	0	0	0	copy fasta	MMS19	chr10	97453324	97503422
MMS19_chr10_97453324_97503422	0/0	a0007	1030	1	0	0	1	0	0	copy fasta	MMS19	chr10	97453324	97503422
MMS19_chr10_97453324_97503422	0/0	a0008	1030	1	0	0	0	1	0	copy fasta	MMS19	chr10	97453324	97503422
MMS19_chr10_97453324_97503422	0/0	a0009	1030	1	1	0	0	0	0	copy fasta	MMS19	chr10	97453324	97503422
MMS19_chr10_97453324_97503422	0/0	a0010	1030	1	1	0	0	0	0	copy fasta	MMS19	chr10	97453324	97503422
MMS19_chr10_97453324_97503422	0/0	a0011	1030	1	0	0	0	0	1	copy fasta	MMS19	chr10	97453324	97503422
MMS22L_chr6_97137161_97288216	1/0	a0001	1243	133	20	18	86	0	8	copy fasta	MMS22L	chr6	97137161	97288216
MMS22L_chr6_97137161_97288216	0/1	a0002	1243	103	26	17	46	2	11	copy fasta	MMS22L	chr6	97137161	97288216
MMS22L_chr6_97137161_97288216	0/0	a0003	1243	23	20	0	0	0	3	copy fasta	MMS22L	chr6	97137161	97288216
MMS22L_chr6_97137161_97288216	0/0	a0004	1243	14	1	8	0	1	4	copy fasta	MMS22L	chr6	97137161	97288216
MMS22L_chr6_97137161_97288216	0/0	a0005	1243	4	4	0	0	0	0	copy fasta	MMS22L	chr6	97137161	97288216