Joint Open Genome and Omics Platform (JoGo)

Search Genic Haplotype Catalog

Haplotypefield

Choose the ACTG layer used to define haplotypes.

Genename

e.g. ALDH2, HBB.

Chr

Chromosome number (1-22, X, Y).

GRCh38

1 = haplotype type matches GRCh38; 0 = does not match.

Chm13v2

1 = haplotype type matches CHM13v2; 0 = does not match.

Gpopname

Filter by superpopulation group.

Popname

Filter by population group.

Total

Minimum number of hits (≥).

Start

Start coordinate (GRCh38).

End

End coordinate (GRCh38).

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regionname	grch38/ chm13v2 1/0: The haplotype type is the same as GRCh38 0/1: The haplotype type is the same as CHM13v2 0/0: The haplotype type matches neither GRCh38 nor CHM13v2 1/1: The haplotype type is the same on both GRCh38 and CHM13v2	ahapid	alen	total	AFR	AMR	EAS	EUR	SAS	aseq	genename	chr	start	end
AOX1_chr2_200581014_200676495	0/1	a0002	1338	38	1	11	18	2	5	copy fasta	AOX1	chr2	200581014	200676495
AOX1_chr2_200581014_200676495	0/0	a0003	1338	26	21	0	0	2	3	copy fasta	AOX1	chr2	200581014	200676495
AOX1_chr2_200581014_200676495	0/0	a0004	1338	8	0	4	4	0	0	copy fasta	AOX1	chr2	200581014	200676495
AOX1_chr2_200581014_200676495	0/0	a0005	1338	4	0	0	4	0	0	copy fasta	AOX1	chr2	200581014	200676495
AOX1_chr2_200581014_200676495	0/0	a0006	1338	2	2	0	0	0	0	copy fasta	AOX1	chr2	200581014	200676495
AOX1_chr2_200581014_200676495	0/0	a0007	1338	1	0	0	1	0	0	copy fasta	AOX1	chr2	200581014	200676495
AOX1_chr2_200581014_200676495	0/0	a0008	1338	1	0	0	1	0	0	copy fasta	AOX1	chr2	200581014	200676495
AOX1_chr2_200581014_200676495	0/0	a0009	1338	1	0	0	1	0	0	copy fasta	AOX1	chr2	200581014	200676495
AOX1_chr2_200581014_200676495	0/0	a0010	965	1	0	1	0	0	0	copy fasta	AOX1	chr2	200581014	200676495
AOX1_chr2_200581014_200676495	0/0	a0011	1338	1	1	0	0	0	0	copy fasta	AOX1	chr2	200581014	200676495
AOX1_chr2_200581014_200676495	0/0	a0012	1338	1	0	0	1	0	0	copy fasta	AOX1	chr2	200581014	200676495
AOX1_chr2_200581014_200676495	0/0	a0013	1338	1	1	0	0	0	0	copy fasta	AOX1	chr2	200581014	200676495
AOX1_chr2_200581014_200676495	0/0	a0014	1338	1	1	0	0	0	0	copy fasta	AOX1	chr2	200581014	200676495
AOX1_chr2_200581014_200676495	0/0	a0015	1338	1	1	0	0	0	0	copy fasta	AOX1	chr2	200581014	200676495
AOX1_chr2_200581014_200676495	0/0	a0016	1338	1	1	0	0	0	0	copy fasta	AOX1	chr2	200581014	200676495
AOX1_chr2_200581014_200676495	0/0	a0017	1338	1	1	0	0	0	0	copy fasta	AOX1	chr2	200581014	200676495
AOX1_chr2_200581014_200676495	0/0	a0018	1338	1	0	0	0	0	1	copy fasta	AOX1	chr2	200581014	200676495
AOX1_chr2_200581014_200676495	0/0	a0019	1338	1	0	0	1	0	0	copy fasta	AOX1	chr2	200581014	200676495
AP1AR_chr4_112226787_112278110	1/1	a0001	302	395	87	72	189	12	33	copy fasta	AP1AR	chr4	112226787	112278110
AP1AR_chr4_112226787_112278110	0/0	a0002	302	1	0	0	1	0	0	copy fasta	AP1AR	chr4	112226787	112278110
AP1AR_chr4_112226787_112278110	0/0	a0003	302	1	1	0	0	0	0	copy fasta	AP1AR	chr4	112226787	112278110
AP1AR_chr4_112226787_112278110	0/0	a0004	302	1	0	0	0	0	1	copy fasta	AP1AR	chr4	112226787	112278110
AP1B1_chr22_29322680_29393570	1/1	a0001	949	368	92	60	164	14	36	copy fasta	AP1B1	chr22	29322680	29393570
AP1B1_chr22_29322680_29393570	0/0	a0002	949	2	0	0	0	0	2	copy fasta	AP1B1	chr22	29322680	29393570
AP1B1_chr22_29322680_29393570	0/0	a0003	949	2	0	0	0	0	2	copy fasta	AP1B1	chr22	29322680	29393570
AP1B1_chr22_29322680_29393570	0/0	a0004	949	1	0	0	1	0	0	copy fasta	AP1B1	chr22	29322680	29393570
AP1B1_chr22_29322680_29393570	0/0	a0005	949	1	0	0	1	0	0	copy fasta	AP1B1	chr22	29322680	29393570
AP1B1_chr22_29322680_29393570	0/0	a0006	949	1	1	0	0	0	0	copy fasta	AP1B1	chr22	29322680	29393570
AP1B1_chr22_29322680_29393570	0/0	a0007	949	1	0	0	1	0	0	copy fasta	AP1B1	chr22	29322680	29393570
AP1B1_chr22_29322680_29393570	0/0	a0008	949	1	1	0	0	0	0	copy fasta	AP1B1	chr22	29322680	29393570
AP1B1_chr22_29322680_29393570	0/0	a0009	949	1	0	0	1	0	0	copy fasta	AP1B1	chr22	29322680	29393570
AP1G1_chr16_71724000_71813834	1/1	a0001	822	234	79	43	80	13	17	copy fasta	AP1G1	chr16	71724000	71813834
AP1G1_chr16_71724000_71813834	0/0	a0002	822	82	5	19	36	3	19	copy fasta	AP1G1	chr16	71724000	71813834
AP1G1_chr16_71724000_71813834	0/0	a0003	822	2	0	0	0	0	2	copy fasta	AP1G1	chr16	71724000	71813834
AP1G1_chr16_71724000_71813834	0/0	a0004	822	1	0	0	1	0	0	copy fasta	AP1G1	chr16	71724000	71813834
AP1G1_chr16_71724000_71813834	0/0	a0005	822	1	0	0	1	0	0	copy fasta	AP1G1	chr16	71724000	71813834
AP1G2_chr14_23554567_23572791	1/1	a0001	785	367	96	67	148	15	39	copy fasta	AP1G2	chr14	23554567	23572791
AP1G2_chr14_23554567_23572791	0/0	a0002	785	11	0	0	11	0	0	copy fasta	AP1G2	chr14	23554567	23572791
AP1G2_chr14_23554567_23572791	0/0	a0003	785	10	1	5	0	1	3	copy fasta	AP1G2	chr14	23554567	23572791
AP1G2_chr14_23554567_23572791	0/0	a0004	785	2	2	0	0	0	0	copy fasta	AP1G2	chr14	23554567	23572791
AP1G2_chr14_23554567_23572791	0/0	a0005	785	1	0	0	1	0	0	copy fasta	AP1G2	chr14	23554567	23572791
AP1G2_chr14_23554567_23572791	0/0	a0006	785	1	1	0	0	0	0	copy fasta	AP1G2	chr14	23554567	23572791
AP1G2_chr14_23554567_23572791	0/0	a0007	785	1	0	0	1	0	0	copy fasta	AP1G2	chr14	23554567	23572791
AP1G2_chr14_23554567_23572791	0/0	a0008	785	1	0	0	1	0	0	copy fasta	AP1G2	chr14	23554567	23572791
AP1G2_chr14_23554567_23572791	0/0	a0009	785	1	0	0	1	0	0	copy fasta	AP1G2	chr14	23554567	23572791
AP1G2_chr14_23554567_23572791	0/0	a0010	333	1	0	0	1	0	0	copy fasta	AP1G2	chr14	23554567	23572791
AP1M1_chr19_16192911_16250906	1/1	a0001	423	308	86	62	112	8	38	copy fasta	AP1M1	chr19	16192911	16250906
AP1M2_chr19_10567671_10592312	1/1	a0001	423	393	88	69	174	16	44	copy fasta	AP1M2	chr19	10567671	10592312
AP1M2_chr19_10567671_10592312	0/0	a0002	26	1	0	1	0	0	0	copy fasta	AP1M2	chr19	10567671	10592312
AP1S1_chr7_101149476_101166276	1/1	a0001	158	432	90	74	200	16	50	copy fasta	AP1S1	chr7	101149476	101166276