JoGo: Joint Open Genome and Omics Platform

Search Genic Haplotype Catalog

Haplotypefield

Choose the ACTG layer used to define haplotypes.

Genename

e.g. ALDH2, HBB.

Chr

Chromosome number (1-22, X, Y).

GRCh38

1 = haplotype type matches GRCh38; 0 = does not match.

Chm13v2

1 = haplotype type matches CHM13v2; 0 = does not match.

Gpopname

Filter by superpopulation group.

Popname

Filter by population group.

Total

Minimum number of hits (≥).

Start

Start coordinate (GRCh38).

End

End coordinate (GRCh38).

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regionname	grch38/ chm13v2 1/0: The haplotype type is the same as GRCh38 0/1: The haplotype type is the same as CHM13v2 0/0: The haplotype type matches neither GRCh38 nor CHM13v2 1/1: The haplotype type is the same on both GRCh38 and CHM13v2	ahapid	alen	total	AFR	AMR	EAS	EUR	SAS	aseq	genename	chr	start	end
MUC6_chr11_1007823_1041718	0/0	a0167	5534	1	1	0	0	0	0	copy fasta	MUC6	chr11	1007823	1041718
MUC6_chr11_1007823_1041718	0/0	a0168	6095	1	0	0	1	0	0	copy fasta	MUC6	chr11	1007823	1041718
MUC6_chr11_1007823_1041718	0/0	a0169	5926	1	0	0	1	0	0	copy fasta	MUC6	chr11	1007823	1041718
MUC6_chr11_1007823_1041718	0/0	a0170	4860	1	0	0	1	0	0	copy fasta	MUC6	chr11	1007823	1041718
MUC6_chr11_1007823_1041718	0/0	a0171	5926	1	0	0	0	0	1	copy fasta	MUC6	chr11	1007823	1041718
MUC6_chr11_1007823_1041718	0/0	a0172	5366	1	0	0	1	0	0	copy fasta	MUC6	chr11	1007823	1041718
MUC6_chr11_1007823_1041718	0/0	a0173	5366	1	0	0	0	0	1	copy fasta	MUC6	chr11	1007823	1041718
MUC7_chr4_70467197_70487997	1/1	a0001	377	206	47	40	88	6	23	copy fasta	MUC7	chr4	70467197	70487997
MUC7_chr4_70467197_70487997	0/0	a0002	377	135	22	15	74	6	18	copy fasta	MUC7	chr4	70467197	70487997
MUC7_chr4_70467197_70487997	0/0	a0003	354	69	2	9	50	4	4	copy fasta	MUC7	chr4	70467197	70487997
MUC7_chr4_70467197_70487997	0/0	a0004	377	14	11	3	0	0	0	copy fasta	MUC7	chr4	70467197	70487997
MUC7_chr4_70467197_70487997	0/0	a0005	377	4	4	0	0	0	0	copy fasta	MUC7	chr4	70467197	70487997
MUC7_chr4_70467197_70487997	0/0	a0006	354	3	3	0	0	0	0	copy fasta	MUC7	chr4	70467197	70487997
MUC7_chr4_70467197_70487997	0/0	a0007	354	2	2	0	0	0	0	copy fasta	MUC7	chr4	70467197	70487997
MUC7_chr4_70467197_70487997	0/0	a0008	377	1	1	0	0	0	0	copy fasta	MUC7	chr4	70467197	70487997
MUC7_chr4_70467197_70487997	0/0	a0009	377	1	0	1	0	0	0	copy fasta	MUC7	chr4	70467197	70487997
MUC7_chr4_70467197_70487997	0/0	a0010	377	1	0	0	0	0	1	copy fasta	MUC7	chr4	70467197	70487997
MUCL1_chr12_54849516_54863387	1/1	a0001	90	424	92	77	197	16	40	copy fasta	MUCL1	chr12	54849516	54863387
MUCL1_chr12_54849516_54863387	0/0	a0002	90	2	1	0	1	0	0	copy fasta	MUCL1	chr12	54849516	54863387
MUCL1_chr12_54849516_54863387	0/0	a0003	90	1	0	1	0	0	0	copy fasta	MUCL1	chr12	54849516	54863387
MUCL1_chr12_54849516_54863387	0/0	a0004	82	1	0	1	0	0	0	copy fasta	MUCL1	chr12	54849516	54863387
MUCL1_chr12_54849516_54863387	0/0	a0005	90	1	0	1	0	0	0	copy fasta	MUCL1	chr12	54849516	54863387
MUCL1_chr12_54849516_54863387	0/0	a0006	90	1	1	0	0	0	0	copy fasta	MUCL1	chr12	54849516	54863387
MUCL3_chr6_30935973_30959221	0/1	a0001	1393	212	35	30	111	7	28	copy fasta	MUCL3	chr6	30935973	30959221
MUCL3_chr6_30935973_30959221	0/0	a0002	1393	70	1	21	33	4	11	copy fasta	MUCL3	chr6	30935973	30959221
MUCL3_chr6_30935973_30959221	0/0	a0003	1393	47	22	14	8	2	1	copy fasta	MUCL3	chr6	30935973	30959221
MUCL3_chr6_30935973_30959221	0/0	a0004	1393	23	9	4	7	1	2	copy fasta	MUCL3	chr6	30935973	30959221
MUCL3_chr6_30935973_30959221	0/0	a0005	1393	21	4	5	11	0	1	copy fasta	MUCL3	chr6	30935973	30959221
MUCL3_chr6_30935973_30959221	0/0	a0006	1374	19	2	0	17	0	0	copy fasta	MUCL3	chr6	30935973	30959221
MUCL3_chr6_30935973_30959221	0/0	a0007	1393	12	4	4	1	2	1	copy fasta	MUCL3	chr6	30935973	30959221
MUCL3_chr6_30935973_30959221	0/0	a0008	1393	8	6	0	2	0	0	copy fasta	MUCL3	chr6	30935973	30959221
MUCL3_chr6_30935973_30959221	0/0	a0009	1393	8	5	1	0	0	2	copy fasta	MUCL3	chr6	30935973	30959221
MUCL3_chr6_30935973_30959221	0/0	a0010	1393	7	0	0	6	0	1	copy fasta	MUCL3	chr6	30935973	30959221
MUCL3_chr6_30935973_30959221	0/0	a0011	1393	3	3	0	0	0	0	copy fasta	MUCL3	chr6	30935973	30959221
MUCL3_chr6_30935973_30959221	0/0	a0012	1393	1	0	0	1	0	0	copy fasta	MUCL3	chr6	30935973	30959221
MUCL3_chr6_30935973_30959221	0/0	a0013	103	1	0	1	0	0	0	copy fasta	MUCL3	chr6	30935973	30959221
MUCL3_chr6_30935973_30959221	0/0	a0014	1393	1	0	0	1	0	0	copy fasta	MUCL3	chr6	30935973	30959221
MUCL3_chr6_30935973_30959221	0/0	a0015	1393	1	0	0	1	0	0	copy fasta	MUCL3	chr6	30935973	30959221
MUCL3_chr6_30935973_30959221	0/0	a0016	1393	1	0	0	1	0	0	copy fasta	MUCL3	chr6	30935973	30959221
MUCL3_chr6_30935973_30959221	0/0	a0017	1435	1	1	0	0	0	0	copy fasta	MUCL3	chr6	30935973	30959221
MUCL3_chr6_30935973_30959221	0/0	a0018	1393	1	0	0	0	0	1	copy fasta	MUCL3	chr6	30935973	30959221
MUCL3_chr6_30935973_30959221	0/0	a0019	1393	1	1	0	0	0	0	copy fasta	MUCL3	chr6	30935973	30959221
MUCL3_chr6_30935973_30959221	0/0	a0020	1393	1	1	0	0	0	0	copy fasta	MUCL3	chr6	30935973	30959221
MUCL3_chr6_30935973_30959221	0/0	a0021	1393	1	0	0	1	0	0	copy fasta	MUCL3	chr6	30935973	30959221
MUCL3_chr6_30935973_30959221	0/0	a0022	1393	1	0	0	1	0	0	copy fasta	MUCL3	chr6	30935973	30959221
MUL1_chr1_20494448_20513151	1/1	a0001	352	436	88	76	208	18	44	copy fasta	MUL1	chr1	20494448	20513151
MUL1_chr1_20494448_20513151	0/0	a0002	352	3	0	2	0	0	1	copy fasta	MUL1	chr1	20494448	20513151
MUL1_chr1_20494448_20513151	0/0	a0003	352	2	2	0	0	0	0	copy fasta	MUL1	chr1	20494448	20513151
MUL1_chr1_20494448_20513151	0/0	a0004	352	1	0	0	0	0	1	copy fasta	MUL1	chr1	20494448	20513151
MUL1_chr1_20494448_20513151	0/0	a0005	352	1	1	0	0	0	0	copy fasta	MUL1	chr1	20494448	20513151